Wall clock time and date at job start Tue Mar 31 2020 16:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47307 * 59.04681 * 3 2 1 5 5 C 1.34777 * 120.00021 * 277.54879 * 4 3 2 6 6 O 1.21690 * 120.00066 * 177.64412 * 5 4 3 7 7 C 1.46689 * 120.00063 * 357.64114 * 5 4 3 8 8 S 1.76214 * 126.12757 * 7.86602 * 7 5 4 9 9 C 1.70956 * 90.31061 * 179.97438 * 8 7 5 10 10 N 1.29427 * 110.39110 * 0.34789 * 9 8 7 11 11 C 1.30947 * 117.36539 * 359.72827 * 10 9 8 12 12 C 1.50702 * 122.90503 * 180.02562 * 11 10 9 13 13 C 1.46493 * 119.99824 * 97.54482 * 4 3 2 14 14 C 1.53039 * 109.46233 * 60.07195 * 13 4 3 15 15 C 1.53192 * 109.31545 * 178.61689 * 14 13 4 16 16 N 1.46921 * 108.77821 * 54.63251 * 15 14 13 17 17 C 1.36934 * 120.63313 * 126.41926 * 16 15 14 18 18 H 1.07998 * 119.99616 * 324.58185 * 17 16 15 19 19 C 1.38803 * 120.00402 * 144.58386 * 17 16 15 20 20 N 1.31624 * 120.00157 * 4.11815 * 19 17 16 21 21 Si 1.86806 * 120.00333 * 184.12138 * 19 17 16 22 22 H 1.48503 * 109.46731 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47395 * 119.99674 * 21 19 17 24 24 H 1.48498 * 109.47056 * 239.99942 * 21 19 17 25 25 C 1.46930 * 118.73559 * 306.39078 * 16 15 14 26 26 C 1.53041 * 109.46375 * 300.00255 * 13 4 3 27 27 H 4.40644 * 5.51407 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46998 * 299.04944 * 3 2 1 29 29 H 1.08998 * 109.47085 * 179.04861 * 3 2 1 30 30 H 1.07998 * 124.80504 * 180.10105 * 9 8 7 31 31 H 1.09009 * 109.46538 * 269.99141 * 12 11 10 32 32 H 1.08998 * 109.47444 * 29.98629 * 12 11 10 33 33 H 1.08999 * 109.46940 * 149.99659 * 12 11 10 34 34 H 1.09004 * 109.45082 * 180.02562 * 13 4 3 35 35 H 1.09003 * 109.49382 * 298.56506 * 14 13 4 36 36 H 1.08998 * 109.49819 * 58.65911 * 14 13 4 37 37 H 1.09000 * 109.58262 * 294.84409 * 15 14 13 38 38 H 1.09003 * 109.70494 * 174.49483 * 15 14 13 39 39 H 0.96994 * 120.00260 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.59188 * 293.82076 * 25 16 15 41 41 H 1.09010 * 109.70058 * 173.46448 * 25 16 15 42 42 H 1.09001 * 109.49641 * 301.33972 * 26 13 4 43 43 H 1.08992 * 109.49818 * 61.39774 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7095 -1.1845 5 6 3.2154 -2.0549 -1.1781 6 8 3.5806 -2.6473 -2.1764 7 6 2.8632 -2.8050 0.0323 8 16 2.1360 -2.1388 1.4926 9 6 2.1382 -3.6896 2.2123 10 7 2.6461 -4.5619 1.4022 11 6 3.0453 -4.1346 0.2306 12 6 3.6538 -5.0415 -0.8078 13 6 3.5356 0.0426 -2.3760 14 6 4.6804 0.9931 -2.0178 15 6 5.1200 1.7527 -3.2733 16 7 3.9472 2.4150 -3.8603 17 6 3.9636 3.7586 -4.1237 18 1 4.4903 4.4318 -3.4635 19 6 3.3034 4.2555 -5.2390 20 7 2.5943 3.4474 -5.9983 21 14 3.4213 6.0711 -5.6625 22 1 4.2720 6.7593 -4.6585 23 1 4.0223 6.2268 -7.0114 24 1 2.0627 6.6706 -5.6537 25 6 2.7565 1.6079 -4.1600 26 6 2.3434 0.8500 -2.8944 27 1 -1.0498 0.0000 -0.0003 28 1 3.0096 -0.4982 0.8984 29 1 3.0089 1.0283 -0.0171 30 1 1.7716 -3.9094 3.2040 31 1 4.7349 -5.0749 -0.6723 32 1 3.2429 -6.0452 -0.6994 33 1 3.4240 -4.6602 -1.8028 34 1 3.8680 -0.6510 -3.1483 35 1 4.3412 1.7028 -1.2632 36 1 5.5206 0.4194 -1.6267 37 1 5.5435 1.0532 -3.9940 38 1 5.8671 2.5006 -3.0076 39 1 2.1332 3.7945 -6.7778 40 1 2.9872 0.8966 -4.9530 41 1 1.9420 2.2587 -4.4784 42 1 1.5202 0.1745 -3.1274 43 1 2.0258 1.5606 -2.1315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671461160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:35 Heat of formation + Delta-G solvation = 84.102933 kcal Electronic energy + Delta-G solvation = -26760.928554 eV Core-core repulsion = 23128.186146 eV Total energy + Delta-G solvation = -3632.742408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69177 -40.64408 -38.92801 -37.17161 -34.84994 -33.54352 -32.91013 -31.97425 -31.38423 -29.38461 -28.46206 -26.89424 -25.92640 -24.17876 -23.85605 -22.21216 -20.90740 -20.11169 -19.67734 -18.95907 -18.71054 -17.60608 -17.50434 -16.86842 -16.70917 -16.10468 -15.66059 -15.51845 -15.33349 -15.25364 -14.84883 -14.75378 -14.69926 -14.26247 -14.22972 -14.06381 -13.51805 -13.34819 -13.20612 -12.83219 -12.78811 -12.57742 -12.35662 -12.21505 -11.98700 -11.90766 -11.61399 -11.49334 -11.45715 -11.35702 -11.05967 -10.56407 -10.54812 -10.42763 -10.02866 -9.62800 -8.58557 -7.85941 -5.42937 -0.78644 0.19852 0.59723 1.30340 1.38971 1.47767 1.49962 1.59735 1.87075 2.01260 2.23875 2.50521 3.17277 3.30663 3.33836 3.45673 3.67481 3.86315 3.96315 4.01780 4.05333 4.18484 4.30017 4.30439 4.46342 4.65900 4.66546 4.70969 4.76009 4.85185 4.86486 4.99968 5.01263 5.05464 5.13941 5.28071 5.30822 5.41165 5.52645 5.65822 5.77730 6.12952 6.46249 6.60368 6.63661 6.89033 7.17612 7.83716 8.39219 9.18552 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.003135 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.303579 B = 8928.466341 C = 9449.835828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.248 4.248 3 C 0.205 3.795 4 N -0.593 5.593 5 C 0.593 3.407 6 O -0.557 6.557 7 C -0.335 4.335 8 S 0.254 5.746 9 C 0.010 3.990 10 N -0.505 5.505 11 C 0.139 3.861 12 C -0.091 4.091 13 C 0.158 3.842 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.262 4.262 18 H 0.072 0.928 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.291 1.291 25 C 0.179 3.821 26 C -0.122 4.122 27 H 0.247 0.753 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.239 0.761 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.010 0.990 38 H 0.068 0.932 39 H 0.250 0.750 40 H -0.013 1.013 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -10.903 20.767 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.250 4.250 3 C 0.082 3.918 4 N -0.323 5.323 5 C 0.382 3.618 6 O -0.438 6.438 7 C -0.458 4.458 8 S 0.513 5.487 9 C -0.283 4.283 10 N -0.220 5.220 11 C 0.000 4.000 12 C -0.150 4.150 13 C 0.055 3.945 14 C -0.164 4.164 15 C 0.019 3.981 16 N -0.334 5.334 17 C -0.392 4.392 18 H 0.089 0.911 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.218 1.218 25 C 0.053 3.947 26 C -0.162 4.162 27 H 0.263 0.737 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.255 0.745 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.028 0.972 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.005 0.995 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.725 -10.725 20.720 23.490 hybrid contribution 0.017 0.213 -1.488 1.503 sum -2.708 -10.513 19.232 22.084 Atomic orbital electron populations 1.25681 0.96618 0.97830 0.96645 1.23325 0.95086 1.03055 1.03551 1.18794 0.84977 1.00579 0.87430 1.48026 1.63588 1.04967 1.15720 1.17125 0.76788 0.81722 0.86149 1.90751 1.49312 1.68603 1.35104 1.25373 1.19234 0.99182 1.02047 1.84344 1.52763 1.08586 1.02969 1.29892 0.98109 0.95150 1.05143 1.66297 1.14995 1.37734 1.02989 1.20870 0.95154 0.91063 0.92955 1.20646 1.00741 0.97825 0.95817 1.20953 0.95121 0.92569 0.85846 1.22242 0.97245 0.97759 0.99205 1.21013 0.89633 0.94926 0.92562 1.44264 1.10486 1.04980 1.73676 1.19535 1.31233 0.84022 1.04414 0.91087 1.26088 0.99956 1.02087 0.95985 1.70092 1.34961 1.35563 1.17522 0.85185 0.77252 0.80228 0.77673 1.18671 1.22099 1.21802 1.20643 0.90874 0.92069 0.91126 1.22269 0.96409 0.97970 0.99549 0.73684 0.86841 0.85310 0.74482 0.89689 0.89646 0.89913 0.90771 0.90602 0.90295 0.97154 0.91397 0.94077 0.99518 0.91060 0.93561 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 19.25 74.32 1.43 -1.42 16 2 C -0.25 -5.48 10.24 31.12 0.32 -5.16 16 3 C 0.21 4.51 4.73 84.57 0.40 4.91 16 4 N -0.59 -17.26 2.36 -812.84 -1.92 -19.18 16 5 C 0.59 18.72 7.54 86.45 0.65 19.38 16 6 O -0.56 -21.25 13.59 -4.32 -0.06 -21.31 16 7 C -0.33 -8.59 6.23 23.88 0.15 -8.44 16 8 S 0.25 4.13 16.52 -56.49 -0.93 3.20 16 9 C 0.01 0.15 12.22 130.60 1.60 1.75 16 10 N -0.51 -11.31 10.50 -190.40 -2.00 -13.31 16 11 C 0.14 3.55 6.79 42.09 0.29 3.84 16 12 C -0.09 -2.25 9.80 71.24 0.70 -1.55 16 13 C 0.16 5.48 2.47 45.02 0.11 5.59 16 14 C -0.12 -4.01 5.33 30.67 0.16 -3.84 16 15 C 0.14 5.85 6.52 86.36 0.56 6.41 16 16 N -0.61 -30.22 3.00 -699.11 -2.10 -32.32 16 17 C -0.26 -14.01 9.55 84.03 0.80 -13.21 16 18 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.05 -2.52 5.32 84.86 0.45 -2.07 16 20 N -0.94 -54.93 10.62 21.65 0.23 -54.70 16 21 Si 0.97 43.98 29.56 68.60 2.03 46.00 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.18 8.85 5.26 86.36 0.45 9.30 16 26 C -0.12 -4.75 4.93 30.67 0.15 -4.60 16 27 H 0.25 2.89 7.80 -4.43 -0.03 2.85 16 28 H 0.12 1.98 4.48 -20.98 -0.09 1.88 16 29 H 0.13 2.65 6.47 -2.39 -0.02 2.64 16 30 H 0.24 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.40 5.85 -2.39 -0.01 2.39 16 34 H 0.07 3.01 6.90 -2.38 -0.02 3.00 16 35 H 0.08 2.24 6.73 -2.39 -0.02 2.23 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.07 3.99 5.92 -2.38 -0.01 3.97 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.39 7.38 -2.39 -0.02 2.37 16 Total: -1.00 -71.19 356.17 4.43 -66.77 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.95 Total: 13.96 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 8.23 Total: 10.89 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -5.78 Total: -119.50 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -0.93 Total: 3.20 kcal Total: -71.19 4.43 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671461160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.870 kcal (2) G-P(sol) polarization free energy of solvation -71.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds