Wall clock time and date at job start Tue Mar 31 2020 17:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47086 * 306.81622 * 3 2 1 5 5 C 1.34774 * 120.00189 * 90.00214 * 4 3 2 6 6 O 1.21283 * 120.00041 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99941 * 359.97438 * 5 4 3 8 8 C 1.50704 * 109.46713 * 179.97438 * 7 5 4 9 9 C 1.33634 * 122.74325 * 124.73685 * 8 7 5 10 10 S 1.76199 * 107.92125 * 179.97438 * 9 8 7 11 11 C 1.70971 * 90.28396 * 0.27242 * 10 9 8 12 12 N 1.29025 * 110.16737 * 359.84345 * 11 10 9 13 13 C 1.46507 * 119.99612 * 270.00106 * 4 3 2 14 14 C 1.53038 * 109.45977 * 60.03181 * 13 4 3 15 15 C 1.53198 * 109.31044 * 178.60102 * 14 13 4 16 16 N 1.46922 * 108.76696 * 54.65393 * 15 14 13 17 17 C 1.36931 * 120.63378 * 126.36047 * 16 15 14 18 18 H 1.07991 * 120.00133 * 331.86101 * 17 16 15 19 19 C 1.38816 * 119.99891 * 151.85452 * 17 16 15 20 20 N 1.31618 * 120.00127 * 343.07864 * 19 17 16 21 21 Si 1.86804 * 119.99858 * 163.07647 * 19 17 16 22 22 H 1.48496 * 109.46959 * 60.00168 * 21 19 17 23 23 H 1.48501 * 109.46996 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47075 * 300.00166 * 21 19 17 25 25 C 1.46935 * 118.73679 * 306.38234 * 16 15 14 26 26 C 1.53033 * 109.46006 * 299.97217 * 13 4 3 27 27 H 4.40641 * 5.51370 * 179.97438 * 4 1 2 28 28 H 1.08993 * 109.46783 * 186.81575 * 3 2 1 29 29 H 1.09001 * 109.47108 * 66.81490 * 3 2 1 30 30 H 1.09002 * 109.46892 * 60.00142 * 7 5 4 31 31 H 1.09001 * 109.46942 * 300.00184 * 7 5 4 32 32 H 1.08000 * 126.04195 * 0.03851 * 9 8 7 33 33 H 1.08002 * 124.91940 * 179.83267 * 11 10 9 34 34 H 1.09003 * 109.45662 * 179.97438 * 13 4 3 35 35 H 1.09004 * 109.49456 * 298.56176 * 14 13 4 36 36 H 1.09000 * 109.50203 * 58.66018 * 14 13 4 37 37 H 1.09004 * 109.59367 * 294.86170 * 15 14 13 38 38 H 1.09003 * 109.69843 * 174.50257 * 15 14 13 39 39 H 0.97000 * 120.00051 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58509 * 293.82147 * 25 16 15 41 41 H 1.09002 * 109.70393 * 173.46785 * 25 16 15 42 42 H 1.09003 * 109.49728 * 301.33976 * 26 13 4 43 43 H 1.08996 * 109.49890 * 61.40369 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8268 1.1057 5 6 3.3600 -2.1418 0.9150 6 8 3.7651 -2.8268 1.8303 7 6 3.1086 -2.7612 -0.4357 8 6 3.4365 -4.2312 -0.3830 9 6 2.5607 -5.1799 -0.7275 10 16 3.3458 -6.7436 -0.5204 11 6 4.7710 -5.9665 0.0164 12 7 4.6082 -4.6866 0.0125 13 6 3.3786 -0.2247 2.4189 14 6 2.0767 0.3756 2.9543 15 6 2.3275 0.9732 4.3424 16 7 3.4399 1.9288 4.2517 17 6 3.2945 3.2136 4.7024 18 1 2.3203 3.6795 4.7007 19 6 4.3995 3.9171 5.1619 20 7 5.5031 3.2744 5.4802 21 14 4.3201 5.7760 5.3282 22 1 3.2406 6.1421 6.2799 23 1 5.6205 6.2836 5.8348 24 1 4.0364 6.3800 4.0016 25 6 4.7111 1.4797 3.6675 26 6 4.4334 0.8761 2.2871 27 1 -1.0498 0.0000 0.0003 28 1 3.0089 1.0212 0.1220 29 1 3.0096 -0.4038 -0.9447 30 1 3.7383 -2.2753 -1.1811 31 1 2.0605 -2.6317 -0.7054 32 1 1.5505 -5.0169 -1.0729 33 1 5.6764 -6.4736 0.3157 34 1 3.7357 -0.9898 3.1084 35 1 1.7318 1.1579 2.2781 36 1 1.3187 -0.4044 3.0257 37 1 2.5851 0.1778 5.0417 38 1 1.4310 1.4878 4.6883 39 1 6.2751 3.7660 5.8016 40 1 5.1631 0.7256 4.3119 41 1 5.3888 2.3274 3.5661 42 1 5.3531 0.4523 1.8837 43 1 4.0664 1.6533 1.6169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671496485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:57 Heat of formation + Delta-G solvation = 99.485534 kcal Electronic energy + Delta-G solvation = -26312.845365 eV Core-core repulsion = 22680.769997 eV Total energy + Delta-G solvation = -3632.075368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.53940 -39.43762 -37.33552 -35.60753 -33.20203 -32.45685 -31.94314 -30.18787 -29.66475 -28.30015 -27.11492 -25.33190 -24.67470 -22.19796 -22.11901 -20.14027 -19.52646 -19.26250 -18.37094 -17.68252 -17.10123 -16.73020 -16.12644 -15.78872 -15.25769 -14.80715 -14.49662 -13.96693 -13.80891 -13.74530 -13.51575 -13.43985 -13.39588 -13.11023 -12.83522 -12.76563 -12.35347 -12.20326 -11.63344 -11.48258 -11.14775 -10.96511 -10.71173 -10.53928 -10.40457 -10.17690 -10.13753 -10.05102 -9.79729 -9.75900 -9.69356 -9.60156 -9.45634 -8.99437 -8.58105 -8.36424 -6.66546 -5.77481 -3.20117 0.54296 1.21211 1.52820 2.43951 2.67088 2.77218 2.79272 3.38793 3.44894 3.45616 3.46683 3.99705 4.32684 4.50561 4.60974 4.70196 4.96376 5.03882 5.06992 5.22932 5.33272 5.38989 5.44403 5.50156 5.53842 5.64650 5.87762 5.88879 5.92026 6.10664 6.24268 6.35972 6.53339 6.58802 6.65719 6.79969 6.91765 6.99511 7.35595 7.50428 7.57027 7.61221 7.68036 7.80529 8.33564 8.46347 9.22398 9.85611 10.42969 11.31237 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002717 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.190455 B =10302.262084 C =11048.377023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.200 4.200 3 C 0.213 3.787 4 N -0.604 5.604 5 C 0.520 3.480 6 O -0.518 6.518 7 C -0.069 4.069 8 C 0.087 3.913 9 C -0.253 4.253 10 S 0.104 5.896 11 C 0.028 3.972 12 N -0.442 5.442 13 C 0.147 3.853 14 C -0.134 4.134 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.215 0.785 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.056 0.944 39 H 0.255 0.745 40 H 0.020 0.980 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -16.041 -17.455 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.202 4.202 3 C 0.090 3.910 4 N -0.336 5.336 5 C 0.306 3.694 6 O -0.393 6.393 7 C -0.111 4.111 8 C -0.046 4.046 9 C -0.393 4.393 10 S 0.356 5.644 11 C -0.271 4.271 12 N -0.154 5.154 13 C 0.045 3.955 14 C -0.174 4.174 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.232 0.768 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.194 0.806 33 H 0.216 0.784 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.119 -17.067 -16.820 24.731 hybrid contribution -0.491 1.870 0.060 1.934 sum -6.610 -15.197 -16.760 23.570 Atomic orbital electron populations 1.24894 0.95868 1.00239 0.99884 1.23596 0.94918 1.00857 1.00812 1.18425 0.83696 0.98353 0.90543 1.48251 1.65206 1.07854 1.12302 1.20231 0.77610 0.81717 0.89813 1.90730 1.44233 1.60600 1.43736 1.20323 1.03898 0.89537 0.97356 1.19672 0.88767 0.96328 0.99807 1.26776 1.05433 0.94326 1.12722 1.83946 1.09071 1.10645 1.60751 1.28423 1.02795 0.92236 1.03677 1.66037 1.22275 1.12794 1.14301 1.21218 0.96222 0.95764 0.82266 1.22352 0.95786 0.99281 1.00027 1.20869 0.92300 0.92460 0.92289 1.44072 1.09367 1.08465 1.69528 1.19129 0.94783 0.88234 1.36151 0.91755 1.25056 0.97461 0.98411 0.98663 1.70021 1.03945 1.34137 1.46534 0.86373 0.76786 0.85715 0.77900 1.20905 1.21637 1.21064 1.20746 0.88699 0.98219 0.87514 1.22580 0.96960 0.96830 1.02247 0.76798 0.87270 0.88458 0.87194 0.87444 0.80585 0.78431 0.88570 0.92015 0.93243 0.96341 0.92584 0.93534 0.96153 0.89129 0.92817 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 19.25 29.55 0.57 -1.45 16 2 C -0.20 -2.36 11.92 -37.12 -0.44 -2.80 16 3 C 0.21 2.44 5.15 -6.83 -0.04 2.40 16 4 N -0.60 -8.92 2.37 -169.37 -0.40 -9.32 16 5 C 0.52 8.00 7.64 -10.99 -0.08 7.91 16 6 O -0.52 -10.24 14.77 5.55 0.08 -10.16 16 7 C -0.07 -0.76 4.75 -29.03 -0.14 -0.89 16 8 C 0.09 1.06 5.64 -84.23 -0.47 0.59 16 9 C -0.25 -2.45 11.07 29.12 0.32 -2.12 16 10 S 0.10 0.87 23.22 -107.50 -2.50 -1.63 16 11 C 0.03 0.29 12.23 51.58 0.63 0.92 16 12 N -0.44 -6.08 9.68 -11.90 -0.12 -6.20 16 13 C 0.15 2.65 2.48 -67.89 -0.17 2.48 16 14 C -0.13 -2.45 4.73 -26.61 -0.13 -2.57 16 15 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 16 N -0.59 -14.91 2.99 -172.31 -0.52 -15.42 16 17 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 18 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 21 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.17 4.20 5.30 -3.70 -0.02 4.18 16 26 C -0.15 -2.80 5.31 -26.61 -0.14 -2.94 16 27 H 0.22 1.58 7.80 -54.10 -0.42 1.16 16 28 H 0.11 1.29 6.46 -51.93 -0.34 0.96 16 29 H 0.10 0.79 6.44 -51.93 -0.33 0.46 16 30 H 0.11 0.98 7.40 -51.93 -0.38 0.60 16 31 H 0.11 0.93 7.84 -51.93 -0.41 0.52 16 32 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 35 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -34.54 367.08 -8.45 -43.00 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.77 Total: 1.48 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.36 Total: 1.77 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.41 Total: -56.62 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.54 -8.45 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671496485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.482 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds