Wall clock time and date at job start Tue Mar 31 2020 17:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47086 * 306.81622 * 3 2 1 5 5 C 1.34774 * 120.00189 * 90.00214 * 4 3 2 6 6 O 1.21283 * 120.00041 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99941 * 359.97438 * 5 4 3 8 8 C 1.50704 * 109.46713 * 179.97438 * 7 5 4 9 9 C 1.33634 * 122.74325 * 124.73685 * 8 7 5 10 10 S 1.76199 * 107.92125 * 179.97438 * 9 8 7 11 11 C 1.70971 * 90.28396 * 0.27242 * 10 9 8 12 12 N 1.29025 * 110.16737 * 359.84345 * 11 10 9 13 13 C 1.46507 * 119.99612 * 270.00106 * 4 3 2 14 14 C 1.53038 * 109.45977 * 60.03181 * 13 4 3 15 15 C 1.53198 * 109.31044 * 178.60102 * 14 13 4 16 16 N 1.46922 * 108.76696 * 54.65393 * 15 14 13 17 17 C 1.36931 * 120.63378 * 126.36047 * 16 15 14 18 18 H 1.07991 * 120.00133 * 331.86101 * 17 16 15 19 19 C 1.38816 * 119.99891 * 151.85452 * 17 16 15 20 20 N 1.31618 * 120.00127 * 343.07864 * 19 17 16 21 21 Si 1.86804 * 119.99858 * 163.07647 * 19 17 16 22 22 H 1.48496 * 109.46959 * 60.00168 * 21 19 17 23 23 H 1.48501 * 109.46996 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47075 * 300.00166 * 21 19 17 25 25 C 1.46935 * 118.73679 * 306.38234 * 16 15 14 26 26 C 1.53033 * 109.46006 * 299.97217 * 13 4 3 27 27 H 4.40641 * 5.51370 * 179.97438 * 4 1 2 28 28 H 1.08993 * 109.46783 * 186.81575 * 3 2 1 29 29 H 1.09001 * 109.47108 * 66.81490 * 3 2 1 30 30 H 1.09002 * 109.46892 * 60.00142 * 7 5 4 31 31 H 1.09001 * 109.46942 * 300.00184 * 7 5 4 32 32 H 1.08000 * 126.04195 * 0.03851 * 9 8 7 33 33 H 1.08002 * 124.91940 * 179.83267 * 11 10 9 34 34 H 1.09003 * 109.45662 * 179.97438 * 13 4 3 35 35 H 1.09004 * 109.49456 * 298.56176 * 14 13 4 36 36 H 1.09000 * 109.50203 * 58.66018 * 14 13 4 37 37 H 1.09004 * 109.59367 * 294.86170 * 15 14 13 38 38 H 1.09003 * 109.69843 * 174.50257 * 15 14 13 39 39 H 0.97000 * 120.00051 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58509 * 293.82147 * 25 16 15 41 41 H 1.09002 * 109.70393 * 173.46785 * 25 16 15 42 42 H 1.09003 * 109.49728 * 301.33976 * 26 13 4 43 43 H 1.08996 * 109.49890 * 61.40369 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8268 1.1057 5 6 3.3600 -2.1418 0.9150 6 8 3.7651 -2.8268 1.8303 7 6 3.1086 -2.7612 -0.4357 8 6 3.4365 -4.2312 -0.3830 9 6 2.5607 -5.1799 -0.7275 10 16 3.3458 -6.7436 -0.5204 11 6 4.7710 -5.9665 0.0164 12 7 4.6082 -4.6866 0.0125 13 6 3.3786 -0.2247 2.4189 14 6 2.0767 0.3756 2.9543 15 6 2.3275 0.9732 4.3424 16 7 3.4399 1.9288 4.2517 17 6 3.2945 3.2136 4.7024 18 1 2.3203 3.6795 4.7007 19 6 4.3995 3.9171 5.1619 20 7 5.5031 3.2744 5.4802 21 14 4.3201 5.7760 5.3282 22 1 3.2406 6.1421 6.2799 23 1 5.6205 6.2836 5.8348 24 1 4.0364 6.3800 4.0016 25 6 4.7111 1.4797 3.6675 26 6 4.4334 0.8761 2.2871 27 1 -1.0498 0.0000 0.0003 28 1 3.0089 1.0212 0.1220 29 1 3.0096 -0.4038 -0.9447 30 1 3.7383 -2.2753 -1.1811 31 1 2.0605 -2.6317 -0.7054 32 1 1.5505 -5.0169 -1.0729 33 1 5.6764 -6.4736 0.3157 34 1 3.7357 -0.9898 3.1084 35 1 1.7318 1.1579 2.2781 36 1 1.3187 -0.4044 3.0257 37 1 2.5851 0.1778 5.0417 38 1 1.4310 1.4878 4.6883 39 1 6.2751 3.7660 5.8016 40 1 5.1631 0.7256 4.3119 41 1 5.3888 2.3274 3.5661 42 1 5.3531 0.4523 1.8837 43 1 4.0664 1.6533 1.6169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671496485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:56 Heat of formation + Delta-G solvation = 77.937854 kcal Electronic energy + Delta-G solvation = -26313.779742 eV Core-core repulsion = 22680.769997 eV Total energy + Delta-G solvation = -3633.009746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58585 -40.45544 -38.89887 -36.97096 -34.73676 -33.46530 -33.18522 -31.81821 -31.39801 -29.24006 -28.15965 -26.86381 -25.78428 -23.92952 -23.77746 -21.32411 -20.79827 -20.36119 -19.35014 -18.70297 -18.46369 -18.15950 -17.32127 -16.80126 -16.65049 -16.23055 -15.70137 -15.40874 -15.34401 -14.91292 -14.75846 -14.69071 -14.38493 -14.29184 -14.15224 -14.09961 -13.81624 -13.24634 -13.21885 -13.01782 -12.67480 -12.56960 -12.33777 -12.18237 -12.06534 -11.94815 -11.54283 -11.38797 -11.30659 -11.08676 -10.77978 -10.56923 -10.51960 -10.33550 -9.79354 -9.72648 -8.72829 -7.88273 -5.34980 -0.17942 0.54356 0.80507 1.46205 1.48145 1.50446 1.57382 1.65168 1.86653 1.97630 2.46015 2.51285 3.27205 3.27426 3.54273 3.61044 3.67389 3.91453 3.98570 4.05876 4.21582 4.25362 4.31651 4.42398 4.43727 4.45902 4.56737 4.61812 4.72445 4.78790 4.82519 5.00620 5.02111 5.10987 5.15319 5.16893 5.26914 5.43540 5.55757 5.62375 5.68094 6.37174 6.38799 6.76253 6.87608 7.12457 7.18390 7.82038 8.35929 9.18807 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002717 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.190455 B =10302.262084 C =11048.377023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.233 4.233 3 C 0.209 3.791 4 N -0.601 5.601 5 C 0.515 3.485 6 O -0.571 6.571 7 C -0.058 4.058 8 C 0.054 3.946 9 C -0.252 4.252 10 S 0.157 5.843 11 C 0.007 3.993 12 N -0.491 5.491 13 C 0.157 3.843 14 C -0.113 4.113 15 C 0.144 3.856 16 N -0.607 5.607 17 C -0.264 4.264 18 H 0.070 0.930 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.182 3.818 26 C -0.128 4.128 27 H 0.242 0.758 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.205 0.795 33 H 0.217 0.783 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.004 0.996 38 H 0.061 0.939 39 H 0.251 0.749 40 H -0.013 1.013 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 -16.309 -20.138 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.234 4.234 3 C 0.088 3.912 4 N -0.332 5.332 5 C 0.304 3.696 6 O -0.449 6.449 7 C -0.100 4.100 8 C -0.079 4.079 9 C -0.391 4.391 10 S 0.410 5.590 11 C -0.291 4.291 12 N -0.205 5.205 13 C 0.054 3.946 14 C -0.153 4.153 15 C 0.018 3.982 16 N -0.330 5.330 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.200 1.200 25 C 0.056 3.944 26 C -0.168 4.168 27 H 0.258 0.742 28 H 0.123 0.877 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.222 0.778 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.507 -17.345 -19.551 27.485 hybrid contribution 0.173 1.827 0.921 2.053 sum -8.334 -15.518 -18.630 25.638 Atomic orbital electron populations 1.25645 0.96691 0.98754 0.98330 1.23697 0.95266 1.02230 1.02229 1.18678 0.84090 0.97765 0.90643 1.48158 1.65099 1.08259 1.11680 1.21064 0.76192 0.81318 0.91025 1.90707 1.46545 1.61808 1.45827 1.20361 1.06010 0.89034 0.94545 1.19905 0.89156 0.97237 1.01560 1.27188 1.06249 0.94551 1.11155 1.83723 1.07105 1.09167 1.59036 1.28806 1.04594 0.92026 1.03644 1.66037 1.23903 1.14542 1.15971 1.20747 0.95553 0.94334 0.83968 1.22083 0.96034 0.99446 0.97688 1.20991 0.91332 0.91577 0.94312 1.44313 1.10219 1.08658 1.69856 1.19492 0.95053 0.89285 1.35594 0.91248 1.25864 0.97165 1.02775 0.98793 1.70197 1.04561 1.35674 1.47873 0.85298 0.76461 0.80251 0.78167 1.20128 1.22180 1.20007 1.20505 0.88011 0.96287 0.89598 1.22300 0.97949 0.97390 0.99142 0.74167 0.87682 0.84764 0.85013 0.84560 0.77835 0.76689 0.91952 0.91225 0.92016 0.97829 0.92031 0.94044 0.99488 0.91989 0.92105 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 19.25 74.32 1.43 -1.65 16 2 C -0.23 -4.73 11.92 31.12 0.37 -4.36 16 3 C 0.21 4.24 5.15 84.57 0.44 4.67 16 4 N -0.60 -17.02 2.37 -808.17 -1.91 -18.93 16 5 C 0.51 15.43 7.64 87.66 0.67 16.10 16 6 O -0.57 -23.07 14.77 -3.04 -0.04 -23.12 16 7 C -0.06 -1.14 4.75 29.10 0.14 -1.00 16 8 C 0.05 1.23 5.64 41.52 0.23 1.46 16 9 C -0.25 -4.22 11.07 66.77 0.74 -3.48 16 10 S 0.16 2.31 23.22 -56.49 -1.31 0.99 16 11 C 0.01 0.14 12.23 130.65 1.60 1.74 16 12 N -0.49 -13.37 9.68 -191.56 -1.85 -15.22 16 13 C 0.16 5.73 2.48 45.01 0.11 5.84 16 14 C -0.11 -4.03 4.73 30.67 0.15 -3.89 16 15 C 0.14 6.32 6.52 86.37 0.56 6.88 16 16 N -0.61 -31.34 2.99 -699.07 -2.09 -33.43 16 17 C -0.26 -14.66 9.58 84.04 0.81 -13.85 16 18 H 0.07 3.71 7.88 -2.92 -0.02 3.69 16 19 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 20 N -0.94 -56.54 11.19 21.65 0.24 -56.30 16 21 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 C 0.18 9.18 5.30 86.36 0.46 9.64 16 26 C -0.13 -4.98 5.31 30.67 0.16 -4.81 16 27 H 0.24 2.52 7.80 -4.43 -0.03 2.48 16 28 H 0.11 2.23 6.46 -2.39 -0.02 2.21 16 29 H 0.13 1.68 6.44 -2.39 -0.02 1.67 16 30 H 0.13 1.95 7.40 -2.39 -0.02 1.93 16 31 H 0.14 1.83 7.84 -2.39 -0.02 1.81 16 32 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.06 2.73 6.90 -2.39 -0.02 2.71 16 35 H 0.07 2.41 7.02 -2.38 -0.02 2.39 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.06 3.46 6.06 -2.39 -0.01 3.44 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.07 2.59 6.72 -2.39 -0.02 2.57 16 Total: -1.00 -78.67 367.08 4.35 -74.32 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.02 Total: 13.89 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 8.28 Total: 10.86 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -5.62 Total: -123.89 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.04 Total: -23.12 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 0.99 kcal Total: -78.67 4.35 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671496485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.254 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds