Wall clock time and date at job start Tue Mar 31 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47137 * 2 1 4 4 C 1.52996 * 109.47746 * 120.00100 * 2 1 3 5 5 C 1.53000 * 109.47455 * 185.00016 * 4 2 1 6 6 N 1.46500 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00260 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99645 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00337 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47480 * 179.97438 * 9 7 6 11 11 N 1.28736 * 121.08436 * 89.97164 * 10 9 7 12 12 S 1.69387 * 108.98436 * 180.02562 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46498 * 109.47116 * 240.00444 * 2 1 3 20 20 C 1.36942 * 120.00101 * 84.99737 * 19 2 1 21 21 H 1.07998 * 120.00017 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00141 * 180.02562 * 20 19 2 23 23 N 1.31620 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00184 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47075 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47335 * 119.99801 * 24 22 20 27 27 H 1.48500 * 109.46964 * 239.99782 * 24 22 20 28 28 H 1.09003 * 109.46676 * 299.99859 * 1 2 3 29 29 H 1.08995 * 109.47671 * 59.99251 * 1 2 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46768 * 64.99532 * 4 2 1 32 32 H 1.09007 * 109.47055 * 305.00441 * 4 2 1 33 33 H 1.08991 * 109.47158 * 60.00417 * 5 4 2 34 34 H 1.09000 * 109.46913 * 299.99718 * 5 4 2 35 35 H 0.97008 * 119.99804 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47369 * 60.00290 * 9 7 6 37 37 H 1.09005 * 109.47168 * 299.99743 * 9 7 6 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.96996 * 120.00214 * 265.00139 * 19 2 1 43 43 H 0.96994 * 120.00407 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5649 -0.6132 1.3135 6 7 4.0534 -1.3044 2.5093 7 6 5.3743 -1.3407 2.7744 8 8 6.1586 -0.8016 2.0227 9 6 5.8768 -2.0521 4.0042 10 6 7.3788 -1.9468 4.0671 11 7 7.9515 -0.9652 4.6718 12 16 9.6311 -1.1502 4.5545 13 6 9.5907 -2.6514 3.6271 14 6 10.5744 -3.4838 3.1116 15 6 10.2180 -4.6072 2.4186 16 6 8.8759 -4.9153 2.2312 17 6 7.8940 -4.1154 2.7279 18 6 8.2258 -2.9437 3.4426 19 7 2.0183 -0.6905 -1.1962 20 6 2.1490 -0.0073 -2.3758 21 1 1.8925 1.0407 -2.4241 22 6 2.6112 -0.6617 -3.5094 23 7 2.9243 -1.9387 -3.4504 24 14 2.7903 0.2704 -5.1182 25 1 2.3763 1.6828 -4.9207 26 1 4.2071 0.2267 -5.5607 27 1 1.9291 -0.3573 -6.1524 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 3.4261 -1.7365 3.1100 36 1 5.5882 -3.1023 3.9598 37 1 5.4425 -1.5931 4.8924 38 1 11.6175 -3.2450 3.2573 39 1 10.9812 -5.2570 2.0167 40 1 8.6077 -5.8060 1.6823 41 1 6.8574 -4.3747 2.5705 42 1 2.2490 -1.6316 -1.1528 43 1 3.2469 -2.3961 -4.2425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674258068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:36 Heat of formation + Delta-G solvation = 15.957176 kcal Electronic energy + Delta-G solvation = -25058.005081 eV Core-core repulsion = 21422.307651 eV Total energy + Delta-G solvation = -3635.697429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43899 -39.32173 -37.04698 -36.45825 -34.37021 -32.32243 -31.66997 -30.77773 -30.55385 -29.01174 -27.91203 -24.16223 -23.70468 -23.18624 -22.57556 -21.08393 -20.21393 -19.52934 -18.75304 -17.36142 -16.97868 -16.65506 -16.08582 -15.55010 -15.44893 -15.21954 -14.83092 -14.55120 -14.26345 -13.96948 -13.73675 -13.49573 -13.40417 -13.17497 -12.50445 -12.49102 -12.25739 -12.10264 -12.04314 -11.88745 -11.54780 -11.07867 -11.00498 -10.92630 -10.76429 -10.70483 -10.62747 -10.28867 -10.11799 -9.98098 -9.70975 -9.62984 -9.20445 -8.93087 -8.83281 -8.07818 -6.94383 -5.74647 -3.03080 0.27273 0.92180 1.21865 1.58863 1.85206 2.69419 3.23319 3.44184 3.45617 3.51588 3.53410 4.00571 4.21991 4.58566 4.61768 4.64848 4.86211 4.87580 4.96665 5.01727 5.19364 5.28499 5.32823 5.39347 5.56785 5.58195 5.67806 5.75321 5.87595 5.92103 6.06723 6.11275 6.17612 6.33945 6.35360 6.39156 6.46430 6.49807 6.65647 6.70087 6.86489 7.06056 7.57726 7.73526 8.30488 8.43883 9.55479 10.11817 10.46410 11.48117 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.002622 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.812314 B =10678.209852 C =11853.230108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.726 5.726 7 C 0.514 3.486 8 O -0.525 6.525 9 C -0.080 4.080 10 C 0.182 3.818 11 N -0.431 5.431 12 S 0.185 5.815 13 C -0.134 4.134 14 C -0.083 4.083 15 C -0.082 4.082 16 C -0.122 4.122 17 C -0.046 4.046 18 C -0.121 4.121 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.397 0.603 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -7.400 20.137 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.000 4.000 6 N -0.378 5.378 7 C 0.297 3.703 8 O -0.400 6.400 9 C -0.125 4.125 10 C -0.008 4.008 11 N -0.242 5.242 12 S 0.340 5.660 13 C -0.254 4.254 14 C -0.106 4.106 15 C -0.104 4.104 16 C -0.143 4.143 17 C -0.068 4.068 18 C -0.132 4.132 19 N -0.366 5.366 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.231 0.769 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.160 -4.879 20.659 23.982 hybrid contribution -0.832 -1.396 -1.625 2.298 sum 10.328 -6.276 19.034 22.547 Atomic orbital electron populations 1.22422 0.99117 1.00819 0.99979 1.20156 0.91884 0.95602 0.86030 0.93312 1.22057 0.93818 1.01805 0.99364 1.21474 0.94423 0.97198 0.86937 1.46047 1.06763 1.57186 1.27792 1.20083 0.82812 0.80966 0.86427 1.90794 1.55173 1.44961 1.49101 1.20512 0.88668 1.03837 0.99524 1.21789 0.96399 0.89540 0.93115 1.75675 1.02929 1.22593 1.22998 1.84761 1.06091 1.20059 1.55058 1.23478 0.96812 1.01002 1.04126 1.19982 0.98001 0.94114 0.98496 1.21069 0.96656 0.96135 0.96575 1.20802 0.92681 1.00465 1.00320 1.20710 1.00403 0.91437 0.94297 1.20085 0.91220 0.98216 1.03684 1.42454 1.78092 1.10638 1.05368 1.19266 1.36349 0.93848 0.87307 0.91182 1.24714 1.02173 0.95963 0.98039 1.69659 1.51075 1.08663 1.28716 0.86156 0.77319 0.78839 0.84130 1.20575 1.21891 1.21962 0.94574 0.92723 0.93519 0.91554 0.91893 0.91824 0.89655 0.76926 0.86432 0.86410 0.84925 0.84684 0.84798 0.84942 0.78310 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 1.98 5.56 -4.04 -0.02 1.96 16 6 N -0.73 -9.07 5.56 -60.30 -0.33 -9.41 16 7 C 0.51 7.33 7.82 -10.99 -0.09 7.25 16 8 O -0.52 -10.39 16.03 5.55 0.09 -10.30 16 9 C -0.08 -0.81 5.97 -29.04 -0.17 -0.98 16 10 C 0.18 2.38 5.37 -81.23 -0.44 1.94 16 11 N -0.43 -6.23 11.84 34.00 0.40 -5.82 16 12 S 0.18 2.34 23.86 -107.50 -2.56 -0.22 16 13 C -0.13 -1.63 6.71 -38.41 -0.26 -1.88 16 14 C -0.08 -0.79 10.02 -39.93 -0.40 -1.19 16 15 C -0.08 -0.67 10.01 -39.86 -0.40 -1.07 16 16 C -0.12 -1.08 9.92 -40.10 -0.40 -1.47 16 17 C -0.05 -0.48 9.72 -39.25 -0.38 -0.86 16 18 C -0.12 -1.51 6.04 -105.14 -0.64 -2.15 16 19 N -0.72 -17.54 4.57 -53.43 -0.24 -17.78 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 24 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 35 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 36 H 0.12 0.76 7.54 -51.93 -0.39 0.37 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.13 1.12 7.64 -52.49 -0.40 0.72 16 42 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -35.81 380.21 -10.68 -46.50 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.05 Total: 8.09 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.41 Total: -7.03 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.55 Total: -60.40 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.56 Total: -0.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.81 -10.68 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674258068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -35.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds