Wall clock time and date at job start Tue Mar 31 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47137 * 2 1 4 4 C 1.52996 * 109.47746 * 120.00100 * 2 1 3 5 5 C 1.53000 * 109.47455 * 185.00016 * 4 2 1 6 6 N 1.46500 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00260 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99645 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00337 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47480 * 179.97438 * 9 7 6 11 11 N 1.28736 * 121.08436 * 89.97164 * 10 9 7 12 12 S 1.69387 * 108.98436 * 180.02562 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46498 * 109.47116 * 240.00444 * 2 1 3 20 20 C 1.36942 * 120.00101 * 84.99737 * 19 2 1 21 21 H 1.07998 * 120.00017 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00141 * 180.02562 * 20 19 2 23 23 N 1.31620 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00184 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47075 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47335 * 119.99801 * 24 22 20 27 27 H 1.48500 * 109.46964 * 239.99782 * 24 22 20 28 28 H 1.09003 * 109.46676 * 299.99859 * 1 2 3 29 29 H 1.08995 * 109.47671 * 59.99251 * 1 2 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46768 * 64.99532 * 4 2 1 32 32 H 1.09007 * 109.47055 * 305.00441 * 4 2 1 33 33 H 1.08991 * 109.47158 * 60.00417 * 5 4 2 34 34 H 1.09000 * 109.46913 * 299.99718 * 5 4 2 35 35 H 0.97008 * 119.99804 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47369 * 60.00290 * 9 7 6 37 37 H 1.09005 * 109.47168 * 299.99743 * 9 7 6 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.96996 * 120.00214 * 265.00139 * 19 2 1 43 43 H 0.96994 * 120.00407 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5649 -0.6132 1.3135 6 7 4.0534 -1.3044 2.5093 7 6 5.3743 -1.3407 2.7744 8 8 6.1586 -0.8016 2.0227 9 6 5.8768 -2.0521 4.0042 10 6 7.3788 -1.9468 4.0671 11 7 7.9515 -0.9652 4.6718 12 16 9.6311 -1.1502 4.5545 13 6 9.5907 -2.6514 3.6271 14 6 10.5744 -3.4838 3.1116 15 6 10.2180 -4.6072 2.4186 16 6 8.8759 -4.9153 2.2312 17 6 7.8940 -4.1154 2.7279 18 6 8.2258 -2.9437 3.4426 19 7 2.0183 -0.6905 -1.1962 20 6 2.1490 -0.0073 -2.3758 21 1 1.8925 1.0407 -2.4241 22 6 2.6112 -0.6617 -3.5094 23 7 2.9243 -1.9387 -3.4504 24 14 2.7903 0.2704 -5.1182 25 1 2.3763 1.6828 -4.9207 26 1 4.2071 0.2267 -5.5607 27 1 1.9291 -0.3573 -6.1524 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0728 0.4258 35 1 3.4261 -1.7365 3.1100 36 1 5.5882 -3.1023 3.9598 37 1 5.4425 -1.5931 4.8924 38 1 11.6175 -3.2450 3.2573 39 1 10.9812 -5.2570 2.0167 40 1 8.6077 -5.8060 1.6823 41 1 6.8574 -4.3747 2.5705 42 1 2.2490 -1.6316 -1.1528 43 1 3.2469 -2.3961 -4.2425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674258068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:35 Heat of formation + Delta-G solvation = -8.699780 kcal Electronic energy + Delta-G solvation = -25059.074286 eV Core-core repulsion = 21422.307651 eV Total energy + Delta-G solvation = -3636.766635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36961 -40.35779 -38.22772 -37.67417 -35.82575 -34.15778 -32.52325 -31.70608 -31.47161 -30.66173 -29.24915 -25.88585 -24.86589 -24.09337 -23.68096 -22.19172 -21.49486 -20.74186 -19.57389 -19.27640 -18.17668 -17.44832 -17.16997 -16.91419 -16.50552 -16.24509 -16.01885 -15.72559 -15.52251 -15.34472 -14.98736 -14.69785 -14.56120 -14.39139 -14.11243 -13.55523 -13.35943 -13.22150 -13.09518 -12.90073 -12.85521 -12.63290 -12.61977 -12.25379 -12.21363 -12.09135 -11.81444 -11.65039 -11.62679 -11.59124 -11.10268 -10.94752 -10.78929 -10.10535 -9.99081 -8.97051 -8.95723 -7.92528 -5.18540 -0.55542 0.16942 0.34726 0.68549 0.98875 1.45287 1.46816 1.55481 1.58491 2.22768 2.56996 2.63978 3.17105 3.41925 3.42706 3.74747 3.93627 3.96248 4.03053 4.04347 4.20255 4.25935 4.28001 4.34308 4.39533 4.45632 4.62926 4.68349 4.79983 4.89701 4.90778 5.00344 5.04958 5.12721 5.23442 5.24567 5.40244 5.41806 5.45666 5.51191 5.55154 5.63302 5.81098 6.31287 6.55755 7.26483 7.37399 8.15421 8.36889 9.31132 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.002622 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.812314 B =10678.209852 C =11853.230108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.588 6.588 9 C -0.071 4.071 10 C 0.175 3.825 11 N -0.466 5.466 12 S 0.160 5.840 13 C -0.150 4.150 14 C -0.094 4.094 15 C -0.073 4.073 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.149 4.149 19 N -0.734 5.734 20 C -0.232 4.232 21 H 0.071 0.929 22 C -0.076 4.076 23 N -0.967 5.967 24 Si 0.963 3.037 25 H -0.268 1.268 26 H -0.299 1.299 27 H -0.292 1.292 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.422 0.578 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.373 0.627 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -8.698 21.375 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.359 5.359 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.115 4.115 10 C -0.015 4.015 11 N -0.277 5.277 12 S 0.316 5.684 13 C -0.271 4.271 14 C -0.116 4.116 15 C -0.095 4.095 16 C -0.144 4.144 17 C -0.081 4.081 18 C -0.160 4.160 19 N -0.375 5.375 20 C -0.364 4.364 21 H 0.089 0.911 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.793 3.207 25 H -0.193 1.193 26 H -0.227 1.227 27 H -0.219 1.219 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.260 0.740 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.205 0.795 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.165 -6.162 21.970 24.979 hybrid contribution -0.528 -1.023 -1.980 2.291 sum 9.636 -7.185 19.989 23.325 Atomic orbital electron populations 1.22257 0.97066 1.01158 1.00793 1.20467 0.93199 0.95093 0.85851 0.94386 1.21907 0.92243 1.02351 0.98765 1.21080 0.95462 0.95861 0.86652 1.45775 1.06935 1.56399 1.26821 1.20803 0.82569 0.79986 0.86854 1.90775 1.56780 1.47727 1.51518 1.20641 0.86945 1.05934 0.98026 1.22288 0.97839 0.89139 0.92202 1.75645 1.03566 1.23757 1.24712 1.84595 1.06053 1.21588 1.56200 1.23738 0.97652 1.00878 1.04788 1.20390 0.98657 0.94216 0.98384 1.21546 0.97443 0.95606 0.94937 1.21253 0.92711 1.00906 0.99512 1.21040 1.01889 0.91007 0.94173 1.20368 0.91416 0.99255 1.04934 1.42639 1.78368 1.10276 1.06236 1.19608 1.34274 0.93984 0.88519 0.91082 1.25436 1.03363 0.96880 1.01153 1.69794 1.52988 1.10018 1.29082 0.85215 0.76578 0.78322 0.80576 1.19257 1.22656 1.21919 0.90632 0.95030 0.93383 0.90420 0.87615 0.93759 0.94490 0.74028 0.82277 0.83633 0.82883 0.81149 0.82024 0.83334 0.79495 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.94 2.89 44.99 0.13 6.07 16 3 H 0.04 1.47 8.08 -2.38 -0.02 1.45 16 4 C -0.11 -3.08 4.87 30.59 0.15 -2.93 16 5 C 0.13 4.30 5.56 86.38 0.48 4.78 16 6 N -0.71 -16.46 5.56 -463.08 -2.57 -19.03 16 7 C 0.51 14.28 7.82 87.66 0.69 14.96 16 8 O -0.59 -24.08 16.03 -3.04 -0.05 -24.13 16 9 C -0.07 -1.30 5.97 29.10 0.17 -1.13 16 10 C 0.18 4.56 5.37 44.74 0.24 4.80 16 11 N -0.47 -13.84 11.84 -46.33 -0.55 -14.39 16 12 S 0.16 4.27 23.86 -56.49 -1.35 2.92 16 13 C -0.15 -3.68 6.71 23.03 0.15 -3.52 16 14 C -0.09 -1.67 10.02 22.05 0.22 -1.45 16 15 C -0.07 -1.01 10.01 22.09 0.22 -0.79 16 16 C -0.12 -1.87 9.92 21.93 0.22 -1.66 16 17 C -0.06 -1.14 9.72 22.49 0.22 -0.92 16 18 C -0.15 -3.68 6.04 -20.20 -0.12 -3.81 16 19 N -0.73 -35.89 4.57 -322.94 -1.48 -37.37 16 20 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 23 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 24 Si 0.96 47.29 29.55 68.60 2.03 49.32 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.56 7.75 -2.39 -0.02 1.54 16 35 H 0.42 5.68 8.47 -92.70 -0.79 4.89 16 36 H 0.16 1.52 7.54 -2.39 -0.02 1.50 16 37 H 0.15 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.15 2.21 7.64 -2.91 -0.02 2.19 16 42 H 0.37 19.55 7.80 -92.71 -0.72 18.82 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -83.20 380.21 0.60 -82.60 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.47 Total: 25.23 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.75 Total: -5.82 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -4.32 Total: -130.11 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.35 Total: 2.92 kcal Total: -83.20 0.60 -82.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674258068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.896 kcal (2) G-P(sol) polarization free energy of solvation -83.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds