Wall clock time and date at job start Tue Mar 31 2020 18:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21591 * 120.00582 * 359.72474 * 16 15 14 18 18 C 1.47565 * 119.99661 * 179.72157 * 16 15 14 19 19 C 1.40122 * 120.58944 * 0.02562 * 18 16 15 20 20 N 1.30610 * 121.17380 * 179.97438 * 19 18 16 21 21 C 1.34903 * 122.44503 * 0.02562 * 20 19 18 22 22 C 1.40624 * 128.46041 * 179.97438 * 21 20 19 23 23 C 1.32279 * 115.91318 * 180.02562 * 22 21 20 24 24 S 1.75507 * 110.83669 * 359.97438 * 23 22 21 25 25 C 1.40093 * 119.27768 * 359.97438 * 21 20 19 26 26 C 1.39376 * 119.74734 * 359.74394 * 25 21 20 27 27 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 28 28 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 31 31 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 32 32 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 34 34 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 35 35 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 36 36 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 37 37 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 38 38 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 39 39 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.41265 * 359.95214 * 19 18 16 41 41 H 1.07999 * 122.04069 * 359.97438 * 22 21 20 42 42 H 1.07996 * 124.57944 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.73164 * 180.25985 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4846 4.8133 5.4639 18 6 -0.7599 5.4537 5.4182 19 6 -1.9865 5.4099 4.7422 20 7 -3.0431 6.0117 5.2190 21 6 -3.0209 6.7046 6.3762 22 6 -4.0735 7.3960 7.0020 23 6 -3.7737 7.9965 8.1419 24 16 -2.0867 7.7445 8.5554 25 6 -1.8256 6.7879 7.1021 26 6 -0.6808 6.1522 6.6246 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.0488 3.4031 -0.7832 33 1 3.1617 2.7642 1.0859 34 1 2.7255 1.2834 1.9721 35 1 0.3541 2.0069 2.0139 36 1 0.7903 3.4876 1.1276 37 1 2.3016 4.1497 2.9790 38 1 1.8652 2.6687 3.8647 39 1 -0.5102 4.0580 3.2297 40 1 -2.0594 4.8691 3.8102 41 1 -5.0658 7.4350 6.5775 42 1 -4.4727 8.5643 8.7379 43 1 0.2479 6.2026 7.1733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689947205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:07 Heat of formation + Delta-G solvation = 36.234528 kcal Electronic energy + Delta-G solvation = -24934.780665 eV Core-core repulsion = 21299.962527 eV Total energy + Delta-G solvation = -3634.818137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.99769 -39.32371 -36.49611 -36.04294 -34.92517 -32.86713 -31.87521 -31.62257 -30.08561 -28.48274 -25.90341 -24.94764 -24.12241 -23.38148 -21.98915 -21.10575 -20.69029 -20.08199 -18.69152 -17.37964 -16.96733 -16.70614 -16.46754 -15.63451 -15.47953 -15.03358 -14.72685 -14.52240 -14.28448 -14.05095 -13.70295 -13.39968 -13.37805 -13.23548 -12.98253 -12.62024 -12.37585 -12.13062 -11.61569 -11.54519 -11.46720 -11.19101 -11.05105 -10.83570 -10.77432 -10.62392 -10.45823 -10.31209 -10.01765 -9.74101 -9.63952 -9.55541 -9.22566 -8.91238 -8.48438 -8.45571 -6.57483 -5.79462 -3.38673 -0.21921 0.64694 0.91924 1.38966 1.51321 2.76653 3.11036 3.34112 3.43438 3.45296 3.50525 3.62348 4.19720 4.37425 4.45583 4.49155 4.62232 4.72497 5.03172 5.23431 5.25902 5.37434 5.41999 5.53890 5.62013 5.66938 5.81130 5.95661 6.00861 6.06497 6.23172 6.33841 6.40378 6.42462 6.56655 6.71234 6.74123 6.90907 7.07475 7.16645 7.36418 7.49320 7.66339 7.82198 8.13966 8.51777 9.19026 9.81278 10.40063 11.19988 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002188 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.917492 B =12794.082411 C =13058.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.259 4.259 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.715 5.715 16 C 0.560 3.440 17 O -0.536 6.536 18 C -0.174 4.174 19 C 0.159 3.841 20 N -0.459 5.459 21 C 0.143 3.857 22 C -0.118 4.118 23 C -0.167 4.167 24 S 0.124 5.876 25 C -0.211 4.211 26 C 0.029 3.971 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.169 0.831 41 H 0.155 0.845 42 H 0.179 0.821 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.804 8.262 17.826 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.188 4.188 14 C -0.003 4.003 15 N -0.366 5.366 16 C 0.345 3.655 17 O -0.414 6.414 18 C -0.183 4.183 19 C -0.013 4.013 20 N -0.167 5.167 21 C 0.009 3.991 22 C -0.149 4.149 23 C -0.304 4.304 24 S 0.388 5.612 25 C -0.328 4.328 26 C -0.001 4.001 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.196 0.804 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.813 8.834 19.046 25.695 hybrid contribution -0.629 0.389 -1.616 1.777 sum -15.443 9.223 17.431 25.047 Atomic orbital electron populations 1.22368 1.00149 0.98904 1.01113 1.20852 0.91677 0.87387 0.98733 1.43750 1.76037 1.08196 1.02488 1.19014 1.04629 1.21107 0.94136 0.92282 1.25193 0.94232 1.01339 0.98062 1.70007 1.03208 1.37233 1.42383 0.86375 0.77678 0.82320 0.81293 1.20095 1.21415 1.21643 1.20792 0.94377 0.96676 0.85796 1.22567 1.02542 0.99965 0.93769 1.21573 0.86700 0.96241 0.95787 1.46098 1.14890 1.52875 1.22745 1.17819 0.87293 0.78996 0.81365 1.90804 1.29334 1.61476 1.59755 1.20991 0.96179 1.03479 0.97601 1.22913 0.86574 0.93577 0.98252 1.67586 1.30523 1.07676 1.10958 1.19270 0.91561 0.96530 0.91776 1.19666 1.00160 0.99417 0.95649 1.25448 0.99593 1.04730 1.00600 1.84381 1.05249 1.51115 1.20488 1.23566 0.99025 1.07820 1.02412 1.21004 0.96714 0.89428 0.92974 0.93249 0.94638 0.93799 0.93890 0.94835 0.93555 0.88713 0.95619 0.92913 0.91572 0.91131 0.91606 0.76625 0.81458 0.82706 0.80402 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.14 2.88 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.93 2.43 -173.23 -0.42 -14.35 16 4 C -0.26 -6.84 9.45 -15.06 -0.14 -6.98 16 5 H 0.06 1.57 7.92 -52.48 -0.42 1.16 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.00 11.47 55.49 0.64 -24.36 16 8 Si 0.89 21.14 29.60 -169.99 -5.03 16.10 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.15 3.32 5.33 -4.05 -0.02 3.30 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16 15 N -0.72 -9.52 5.51 -61.33 -0.34 -9.86 16 16 C 0.56 8.02 7.77 -12.46 -0.10 7.92 16 17 O -0.54 -9.52 16.41 5.29 0.09 -9.43 16 18 C -0.17 -2.09 5.89 -104.87 -0.62 -2.70 16 19 C 0.16 1.71 10.69 -17.36 -0.19 1.53 16 20 N -0.46 -5.38 10.39 -11.01 -0.11 -5.50 16 21 C 0.14 1.55 6.97 -84.92 -0.59 0.96 16 22 C -0.12 -0.95 10.16 -40.61 -0.41 -1.36 16 23 C -0.17 -1.03 11.08 28.81 0.32 -0.71 16 24 S 0.12 0.94 23.29 -107.50 -2.50 -1.56 16 25 C -0.21 -2.21 6.49 -38.46 -0.25 -2.46 16 26 C 0.03 0.33 9.73 -38.64 -0.38 -0.05 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.10 2.40 5.52 -51.93 -0.29 2.12 16 34 H 0.03 0.54 7.86 -51.92 -0.41 0.13 16 35 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.40 4.22 6.53 -40.82 -0.27 3.95 16 40 H 0.17 1.35 6.41 -52.49 -0.34 1.02 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.15 1.66 7.72 -52.49 -0.41 1.25 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.70 373.20 -10.07 -41.77 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.73 Total: 2.40 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.28 Total: -0.85 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.24 Total: -54.06 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.70 -10.07 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689947205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.008 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds