Wall clock time and date at job start Tue Mar 31 2020 18:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47219 * 2 1 4 4 C 1.36932 * 119.99820 * 275.31151 * 3 2 1 5 5 H 1.07999 * 120.00375 * 37.58012 * 4 3 2 6 6 C 1.38816 * 119.99860 * 217.57380 * 4 3 2 7 7 N 1.31622 * 119.99505 * 21.42791 * 6 4 3 8 8 Si 1.86795 * 120.00145 * 201.42648 * 6 4 3 9 9 H 1.48508 * 109.46947 * 90.00230 * 8 6 4 10 10 H 1.48497 * 109.47360 * 209.99872 * 8 6 4 11 11 H 1.48494 * 109.47115 * 330.00134 * 8 6 4 12 12 C 1.46498 * 119.99610 * 95.30845 * 3 2 1 13 13 C 1.53008 * 109.47040 * 270.00219 * 12 3 2 14 14 C 1.53003 * 109.46697 * 180.02562 * 13 12 3 15 15 N 1.46509 * 109.46527 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99555 * 179.97438 * 15 14 13 17 17 O 1.21583 * 120.00020 * 0.02562 * 16 15 14 18 18 C 1.47589 * 119.99605 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.12794 * 359.97438 * 18 16 15 20 20 C 1.35756 * 120.61506 * 179.97438 * 19 18 16 21 21 C 1.41243 * 120.63544 * 0.02562 * 20 19 18 22 22 N 1.34410 * 129.48273 * 180.02562 * 21 20 19 23 23 C 1.28062 * 117.91698 * 179.28429 * 22 21 20 24 24 S 1.70652 * 111.51441 * 0.64872 * 23 22 21 25 25 C 1.40149 * 118.74383 * 359.78556 * 21 20 19 26 26 C 1.38917 * 120.41031 * 0.44297 * 25 21 20 27 27 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47110 * 299.99624 * 1 2 3 29 29 H 1.09000 * 109.46870 * 60.00478 * 1 2 3 30 30 H 1.09004 * 109.47166 * 239.99915 * 2 1 3 31 31 H 1.09004 * 109.47074 * 120.00255 * 2 1 3 32 32 H 0.97006 * 119.99370 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47087 * 150.00635 * 12 3 2 34 34 H 1.08997 * 109.47840 * 30.00352 * 12 3 2 35 35 H 1.08996 * 109.47132 * 60.00038 * 13 12 3 36 36 H 1.09000 * 109.46775 * 299.99946 * 13 12 3 37 37 H 1.08997 * 109.47403 * 60.00586 * 14 13 12 38 38 H 1.08991 * 109.47288 * 299.99414 * 14 13 12 39 39 H 0.97001 * 120.00139 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.68814 * 0.02562 * 19 18 16 41 41 H 1.07997 * 119.68002 * 180.02562 * 20 19 18 42 42 H 1.08001 * 124.24408 * 180.21786 * 23 22 21 43 43 H 1.08004 * 120.07878 * 179.80464 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2795 -2.6584 9 1 2.5376 5.5069 -2.0393 10 1 4.4549 4.5697 -3.1908 11 1 2.2167 3.8357 -3.7670 12 6 2.3732 2.0326 1.2633 13 6 1.1425 2.7382 1.8366 14 6 1.5133 3.4190 3.1557 15 7 0.3350 4.0950 3.7043 16 6 0.4248 4.7660 4.8697 17 8 1.4837 4.8107 5.4655 18 6 -0.7624 5.4466 5.4226 19 6 -1.9846 5.3973 4.7376 20 6 -3.0829 6.0193 5.2374 21 6 -3.0158 6.7287 6.4569 22 7 -3.9799 7.4014 7.1085 23 6 -3.6751 7.9595 8.2201 24 16 -2.0328 7.7147 8.6137 25 6 -1.7949 6.7746 7.1437 26 6 -0.6726 6.1405 6.6258 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0491 3.4028 -0.7834 33 1 3.1616 2.7641 1.0860 34 1 2.7255 1.2833 1.9722 35 1 0.3541 2.0067 2.0139 36 1 0.7903 3.4876 1.1278 37 1 2.3015 4.1505 2.9780 38 1 1.8657 2.6699 3.8647 39 1 -0.5099 4.0591 3.2291 40 1 -2.0531 4.8588 3.8040 41 1 -4.0169 5.9712 4.6973 42 1 -4.3687 8.5210 8.8285 43 1 0.2663 6.1819 7.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689968064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:20 Heat of formation + Delta-G solvation = 37.155456 kcal Electronic energy + Delta-G solvation = -24930.218978 eV Core-core repulsion = 21295.440775 eV Total energy + Delta-G solvation = -3634.778203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94179 -39.56297 -36.95826 -36.42284 -34.90576 -31.88643 -31.75387 -31.46996 -30.21290 -28.49561 -26.10089 -25.16507 -23.90076 -23.09322 -22.46250 -21.09363 -20.64105 -20.06587 -19.03286 -17.55258 -16.92017 -16.56895 -16.29566 -15.57876 -15.40318 -15.14745 -14.84658 -14.45875 -14.28212 -14.10959 -13.99601 -13.58406 -13.41852 -13.18477 -12.83987 -12.62526 -12.37850 -12.15790 -11.61216 -11.46595 -11.29940 -11.17093 -11.04156 -10.77878 -10.61814 -10.60810 -10.46927 -10.14229 -10.10686 -9.93956 -9.66445 -9.55910 -9.21881 -8.90379 -8.54171 -8.48561 -6.58079 -5.79777 -3.39183 -0.25359 0.73588 0.78827 1.25988 1.63434 2.77958 3.16209 3.34663 3.42857 3.43353 3.50029 3.52461 4.18026 4.45672 4.50822 4.56302 4.73528 4.79309 5.04953 5.23510 5.37873 5.38832 5.60863 5.62840 5.71027 5.80539 5.85101 5.95883 6.05970 6.14130 6.24474 6.33560 6.40239 6.43200 6.56459 6.71835 6.74037 6.90097 7.07142 7.09582 7.16005 7.53253 7.66181 7.81530 8.18620 8.51361 9.18612 9.80808 10.39719 11.19684 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002177 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.329301 B =12857.014914 C =13129.965525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.554 3.446 17 O -0.537 6.537 18 C -0.112 4.112 19 C -0.077 4.077 20 C -0.067 4.067 21 C 0.097 3.903 22 N -0.467 5.467 23 C 0.068 3.932 24 S 0.114 5.886 25 C -0.193 4.193 26 C -0.007 4.007 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.206 0.794 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 7.874 17.469 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.188 4.188 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.340 3.660 17 O -0.415 6.415 18 C -0.119 4.119 19 C -0.098 4.098 20 C -0.088 4.088 21 C -0.025 4.025 22 N -0.180 5.180 23 C -0.236 4.236 24 S 0.368 5.632 25 C -0.312 4.312 26 C -0.030 4.030 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.234 0.766 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.223 0.777 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.527 8.364 18.533 24.989 hybrid contribution -0.753 0.436 -1.600 1.822 sum -15.280 8.801 16.933 24.447 Atomic orbital electron populations 1.22368 1.00175 0.98900 1.01084 1.20852 0.91663 0.87395 0.98738 1.43743 1.76042 1.08183 1.02486 1.18987 1.04656 1.21189 0.94170 0.92298 1.25198 0.94218 1.01308 0.98077 1.70002 1.03180 1.37217 1.42411 0.86411 0.76966 0.82628 0.81491 1.21301 1.21729 1.20290 1.20796 0.94389 0.96677 0.85791 1.22560 1.02507 0.99917 0.93811 1.21559 0.86804 0.96214 0.95755 1.46106 1.14836 1.53034 1.22713 1.18018 0.87598 0.79063 0.81327 1.90797 1.29490 1.61339 1.59872 1.19993 0.94456 1.01209 0.96202 1.20887 0.91276 0.98008 0.99665 1.20293 0.99675 0.96072 0.92800 1.19408 0.87039 0.99028 0.96994 1.66210 1.33853 1.10400 1.07527 1.28246 0.98692 1.00756 0.95927 1.84125 1.08829 1.49745 1.20503 1.23769 0.99288 1.07542 1.00573 1.20440 0.96652 0.92164 0.93753 0.94635 0.93811 0.93270 0.93887 0.94829 0.93490 0.88713 0.95618 0.92966 0.91634 0.91188 0.91664 0.76606 0.84067 0.83995 0.77725 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.21 37.16 0.38 -2.50 16 2 C 0.14 2.87 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.92 2.43 -173.23 -0.42 -14.34 16 4 C -0.26 -6.86 9.45 -15.06 -0.14 -7.01 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -25.00 11.47 55.49 0.64 -24.36 16 8 Si 0.90 21.14 29.60 -169.99 -5.03 16.11 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.32 5.33 -4.04 -0.02 3.30 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 15 N -0.72 -9.64 5.51 -61.33 -0.34 -9.98 16 16 C 0.55 8.00 7.76 -12.45 -0.10 7.90 16 17 O -0.54 -9.65 16.34 5.29 0.09 -9.57 16 18 C -0.11 -1.31 5.87 -105.00 -0.62 -1.92 16 19 C -0.08 -0.72 9.44 -39.74 -0.38 -1.09 16 20 C -0.07 -0.64 10.03 -39.33 -0.39 -1.03 16 21 C 0.10 1.04 7.00 -84.88 -0.59 0.45 16 22 N -0.47 -4.76 10.56 -12.83 -0.14 -4.90 16 23 C 0.07 0.48 12.11 51.19 0.62 1.10 16 24 S 0.11 0.86 23.17 -107.50 -2.49 -1.63 16 25 C -0.19 -2.03 6.54 -38.61 -0.25 -2.28 16 26 C -0.01 -0.08 9.62 -38.98 -0.37 -0.46 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.73 6.64 -51.93 -0.34 0.38 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 34 H 0.03 0.54 7.86 -51.93 -0.41 0.13 16 35 H 0.05 0.86 6.64 -51.93 -0.34 0.52 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.40 4.27 6.49 -40.82 -0.26 4.00 16 40 H 0.14 0.98 6.38 -52.49 -0.33 0.64 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.15 1.65 7.64 -52.48 -0.40 1.25 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.08 372.62 -9.96 -42.04 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.72 Total: 2.31 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.16 Total: -1.30 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.26 Total: -53.58 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.08 -9.96 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689968064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.195 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds