Wall clock time and date at job start Tue Mar 31 2020 18:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47219 * 2 1 4 4 C 1.36932 * 119.99820 * 275.31151 * 3 2 1 5 5 H 1.07999 * 120.00375 * 37.58012 * 4 3 2 6 6 C 1.38816 * 119.99860 * 217.57380 * 4 3 2 7 7 N 1.31622 * 119.99505 * 21.42791 * 6 4 3 8 8 Si 1.86795 * 120.00145 * 201.42648 * 6 4 3 9 9 H 1.48508 * 109.46947 * 90.00230 * 8 6 4 10 10 H 1.48497 * 109.47360 * 209.99872 * 8 6 4 11 11 H 1.48494 * 109.47115 * 330.00134 * 8 6 4 12 12 C 1.46498 * 119.99610 * 95.30845 * 3 2 1 13 13 C 1.53008 * 109.47040 * 270.00219 * 12 3 2 14 14 C 1.53003 * 109.46697 * 180.02562 * 13 12 3 15 15 N 1.46509 * 109.46527 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99555 * 179.97438 * 15 14 13 17 17 O 1.21583 * 120.00020 * 0.02562 * 16 15 14 18 18 C 1.47589 * 119.99605 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.12794 * 359.97438 * 18 16 15 20 20 C 1.35756 * 120.61506 * 179.97438 * 19 18 16 21 21 C 1.41243 * 120.63544 * 0.02562 * 20 19 18 22 22 N 1.34410 * 129.48273 * 180.02562 * 21 20 19 23 23 C 1.28062 * 117.91698 * 179.28429 * 22 21 20 24 24 S 1.70652 * 111.51441 * 0.64872 * 23 22 21 25 25 C 1.40149 * 118.74383 * 359.78556 * 21 20 19 26 26 C 1.38917 * 120.41031 * 0.44297 * 25 21 20 27 27 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47110 * 299.99624 * 1 2 3 29 29 H 1.09000 * 109.46870 * 60.00478 * 1 2 3 30 30 H 1.09004 * 109.47166 * 239.99915 * 2 1 3 31 31 H 1.09004 * 109.47074 * 120.00255 * 2 1 3 32 32 H 0.97006 * 119.99370 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47087 * 150.00635 * 12 3 2 34 34 H 1.08997 * 109.47840 * 30.00352 * 12 3 2 35 35 H 1.08996 * 109.47132 * 60.00038 * 13 12 3 36 36 H 1.09000 * 109.46775 * 299.99946 * 13 12 3 37 37 H 1.08997 * 109.47403 * 60.00586 * 14 13 12 38 38 H 1.08991 * 109.47288 * 299.99414 * 14 13 12 39 39 H 0.97001 * 120.00139 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.68814 * 0.02562 * 19 18 16 41 41 H 1.07997 * 119.68002 * 180.02562 * 20 19 18 42 42 H 1.08001 * 124.24408 * 180.21786 * 23 22 21 43 43 H 1.08004 * 120.07878 * 179.80464 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2795 -2.6584 9 1 2.5376 5.5069 -2.0393 10 1 4.4549 4.5697 -3.1908 11 1 2.2167 3.8357 -3.7670 12 6 2.3732 2.0326 1.2633 13 6 1.1425 2.7382 1.8366 14 6 1.5133 3.4190 3.1557 15 7 0.3350 4.0950 3.7043 16 6 0.4248 4.7660 4.8697 17 8 1.4837 4.8107 5.4655 18 6 -0.7624 5.4466 5.4226 19 6 -1.9846 5.3973 4.7376 20 6 -3.0829 6.0193 5.2374 21 6 -3.0158 6.7287 6.4569 22 7 -3.9799 7.4014 7.1085 23 6 -3.6751 7.9595 8.2201 24 16 -2.0328 7.7147 8.6137 25 6 -1.7949 6.7746 7.1437 26 6 -0.6726 6.1405 6.6258 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0491 3.4028 -0.7834 33 1 3.1616 2.7641 1.0860 34 1 2.7255 1.2833 1.9722 35 1 0.3541 2.0067 2.0139 36 1 0.7903 3.4876 1.1278 37 1 2.3015 4.1505 2.9780 38 1 1.8657 2.6699 3.8647 39 1 -0.5099 4.0591 3.2291 40 1 -2.0531 4.8588 3.8040 41 1 -4.0169 5.9712 4.6973 42 1 -4.3687 8.5210 8.8285 43 1 0.2663 6.1819 7.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689968064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:19 Heat of formation + Delta-G solvation = 17.470765 kcal Electronic energy + Delta-G solvation = -24931.072570 eV Core-core repulsion = 21295.440775 eV Total energy + Delta-G solvation = -3635.631795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74864 -40.60305 -38.22008 -37.65849 -36.28637 -33.80245 -33.01006 -32.30414 -31.21504 -30.09350 -27.33020 -26.39649 -25.34013 -24.06874 -23.30050 -22.54636 -22.03198 -21.44143 -19.85028 -18.61574 -18.47531 -17.57397 -17.12535 -17.03103 -16.61038 -16.42149 -15.95489 -15.70166 -15.65142 -15.10467 -15.04511 -14.95218 -14.60226 -14.25053 -14.08370 -14.01383 -13.56923 -13.25781 -13.17290 -12.95684 -12.72017 -12.70392 -12.56655 -12.31062 -12.11878 -11.99621 -11.91147 -11.45243 -11.31268 -11.25352 -11.16647 -10.77307 -10.48222 -10.25308 -9.86174 -9.24242 -8.53063 -7.79238 -5.43380 -0.99051 -0.01077 0.14286 0.62828 0.86355 1.46215 1.49117 1.56671 1.85316 2.04303 2.52270 2.62777 2.93314 3.25512 3.45966 3.55224 3.68091 3.92030 4.03507 4.07918 4.17979 4.28825 4.41669 4.47623 4.56076 4.66987 4.75510 4.78441 4.88477 4.91627 4.97410 5.02308 5.06387 5.07403 5.18714 5.34138 5.36502 5.44400 5.48959 5.62959 5.71991 5.87024 6.44132 6.45113 6.50091 7.08564 7.20905 7.90874 8.43186 9.15269 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002177 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.329301 B =12857.014914 C =13129.965525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.285 1.285 10 H -0.297 1.297 11 H -0.268 1.268 12 C 0.150 3.850 13 C -0.124 4.124 14 C 0.132 3.868 15 N -0.705 5.705 16 C 0.555 3.445 17 O -0.580 6.580 18 C -0.129 4.129 19 C -0.068 4.068 20 C -0.072 4.072 21 C 0.089 3.911 22 N -0.498 5.498 23 C 0.084 3.916 24 S 0.144 5.856 25 C -0.219 4.219 26 C -0.013 4.013 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.247 0.753 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 8.407 18.224 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.023 3.977 13 C -0.164 4.164 14 C 0.008 3.992 15 N -0.357 5.357 16 C 0.344 3.656 17 O -0.462 6.462 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.092 4.092 21 C -0.033 4.033 22 N -0.211 5.211 23 C -0.219 4.219 24 S 0.399 5.601 25 C -0.338 4.338 26 C -0.036 4.036 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.263 0.737 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.625 8.883 19.284 27.593 hybrid contribution 0.146 0.271 -1.701 1.729 sum -17.479 9.154 17.583 26.428 Atomic orbital electron populations 1.22168 0.97161 1.00770 1.00927 1.21004 0.93917 0.85687 0.98578 1.43988 1.76441 1.09554 1.02272 1.19179 1.04005 1.21076 0.94862 0.92665 1.25849 0.94057 1.03372 1.00149 1.70135 1.03790 1.38054 1.44262 0.85492 0.76503 0.80180 0.79641 1.21147 1.22415 1.19303 1.20703 0.95321 0.96137 0.85560 1.22184 1.00773 0.99636 0.93783 1.21212 0.87238 0.95641 0.95109 1.45869 1.14686 1.52511 1.22603 1.18407 0.87881 0.78452 0.80901 1.90771 1.31361 1.62955 1.61079 1.19777 0.94227 1.02500 0.97046 1.21066 0.90124 0.97650 1.00101 1.20569 1.00431 0.95591 0.92639 1.19781 0.87218 0.98856 0.97460 1.66295 1.33973 1.11961 1.08889 1.29020 0.99045 0.98876 0.95002 1.84057 1.08943 1.48470 1.18631 1.23960 0.99050 1.08521 1.02273 1.20429 0.96802 0.92476 0.93866 0.91748 0.92828 0.94471 0.95387 0.93717 0.94061 0.92280 0.95348 0.90850 0.92735 0.93484 0.91748 0.74728 0.81633 0.81901 0.73673 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.13 16 2 C 0.13 5.35 6.44 86.38 0.56 5.90 16 3 N -0.60 -28.60 2.43 -701.97 -1.71 -30.31 16 4 C -0.26 -13.80 9.45 84.04 0.79 -13.00 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.90 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -53.25 11.47 21.65 0.25 -53.00 16 8 Si 0.95 43.95 29.60 68.60 2.03 45.98 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.15 6.66 5.33 86.38 0.46 7.12 16 13 C -0.12 -4.29 5.65 30.60 0.17 -4.11 16 14 C 0.13 4.27 5.67 86.38 0.49 4.76 16 15 N -0.70 -18.46 5.51 -466.21 -2.57 -21.02 16 16 C 0.56 16.12 7.76 86.71 0.67 16.79 16 17 O -0.58 -21.59 16.34 -3.98 -0.06 -21.66 16 18 C -0.13 -2.97 5.87 -20.11 -0.12 -3.09 16 19 C -0.07 -1.16 9.44 22.17 0.21 -0.95 16 20 C -0.07 -1.21 10.03 22.43 0.23 -0.99 16 21 C 0.09 1.78 7.00 39.95 0.28 2.06 16 22 N -0.50 -9.01 10.56 -194.44 -2.05 -11.07 16 23 C 0.08 0.95 12.11 130.79 1.58 2.53 16 24 S 0.14 1.91 23.17 -56.49 -1.31 0.60 16 25 C -0.22 -4.42 6.54 22.90 0.15 -4.27 16 26 C -0.01 -0.29 9.62 22.66 0.22 -0.07 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.61 6.64 -2.39 -0.02 1.60 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.18 8.08 -2.38 -0.02 1.16 16 31 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 32 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 33 H 0.06 3.11 5.52 -2.39 -0.01 3.10 16 34 H 0.03 1.21 7.86 -2.39 -0.02 1.19 16 35 H 0.07 2.25 6.64 -2.39 -0.02 2.23 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.41 8.08 6.49 -92.71 -0.60 7.48 16 40 H 0.17 1.85 6.38 -2.91 -0.02 1.83 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.25 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.14 3.27 7.64 -2.91 -0.02 3.25 16 Total: -1.00 -71.10 372.62 1.86 -69.24 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.44 Total: 14.29 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.85 Total: 6.95 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -6.08 Total: -115.41 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -71.10 1.86 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689968064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.711 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds