Wall clock time and date at job start Tue Mar 31 2020 17:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.47199 * 109.47162 * 119.99797 * 2 1 3 5 5 C 2.64605 * 109.47048 * 119.99647 * 2 1 3 6 6 C 4.07799 * 109.47077 * 119.99730 * 2 1 3 7 7 O 1.21613 * 120.00297 * 240.47297 * 6 5 4 8 8 N 1.34780 * 120.00281 * 60.47275 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47202 * 90.00160 * 20 18 16 22 22 H 1.48508 * 109.47186 * 209.99953 * 20 18 16 23 23 H 1.48499 * 109.47563 * 330.00239 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02683 * 8 6 5 27 27 H 1.09000 * 109.46970 * 300.00431 * 1 2 3 28 28 H 1.08993 * 109.46979 * 60.00337 * 1 2 3 29 29 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47413 * 239.99634 * 2 1 3 31 31 H 1.09001 * 109.47110 * 299.99547 * 3 2 1 32 32 H 1.09000 * 109.47511 * 59.99900 * 3 2 1 33 33 H 1.09006 * 109.47079 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 35 35 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 36 36 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 37 37 H 1.09000 * 109.64541 * 164.95490 * 10 9 8 38 38 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 39 39 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 40 40 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 41 41 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 43 43 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2472 2.1606 6 6 2.8893 -1.9222 3.3298 7 8 3.0838 -1.2983 4.3554 8 7 3.1231 -3.2491 3.2937 9 6 3.6139 -3.9599 4.4839 10 6 2.5410 -4.9575 4.9350 11 6 2.0148 -5.6923 3.7255 12 16 1.1168 -7.2054 3.7434 13 6 1.0008 -7.1672 2.0387 14 6 0.3104 -8.2097 1.1973 15 7 1.2701 -9.2534 0.8284 16 6 0.8679 -10.3123 0.0589 17 1 -0.1569 -10.3782 -0.2756 18 6 1.7772 -11.3009 -0.2911 19 7 3.0260 -11.2208 0.1170 20 14 1.2284 -12.7457 -1.3402 21 1 1.4142 -12.4140 -2.7757 22 1 2.0402 -13.9416 -0.9994 23 1 -0.2056 -13.0302 -1.0796 24 7 1.5879 -6.1191 1.5778 25 6 2.1522 -5.2942 2.4468 26 6 2.8945 -4.0206 2.0631 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 3.8076 -3.2446 5.2832 35 1 4.5310 -4.4951 4.2383 36 1 1.7250 -4.4215 5.4198 37 1 2.9753 -5.6712 5.6351 38 1 -0.5072 -8.6526 1.7661 39 1 -0.0852 -7.7444 0.2946 40 1 2.1904 -9.1943 1.1292 41 1 3.6614 -11.9118 -0.1273 42 1 3.8495 -4.2737 1.6028 43 1 2.2915 -3.4367 1.3677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691804685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:21 Heat of formation + Delta-G solvation = 70.868938 kcal Electronic energy + Delta-G solvation = -24859.242918 eV Core-core repulsion = 21225.926641 eV Total energy + Delta-G solvation = -3633.316277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.67599 -39.30330 -36.78053 -36.56158 -34.70337 -33.13760 -31.87467 -31.49030 -29.84606 -27.62260 -26.87510 -26.56976 -24.45181 -23.64359 -22.88185 -21.94432 -20.91315 -18.93950 -18.19840 -17.53717 -17.16415 -16.70653 -16.30559 -15.78209 -15.07186 -15.03549 -14.85910 -14.59564 -14.25232 -13.95969 -13.74329 -13.60017 -13.45384 -13.00697 -12.77404 -12.67570 -12.60965 -12.42439 -12.28157 -11.93239 -11.84512 -11.80951 -11.53726 -11.12275 -10.98787 -10.86118 -10.77873 -10.60101 -10.35376 -10.17252 -9.85827 -9.36503 -9.15889 -8.97301 -8.95726 -8.46506 -7.05778 -5.83449 -3.15079 0.85734 1.27353 1.52117 1.93803 2.00871 2.60737 2.88787 3.25312 3.40607 3.45507 3.47291 3.61493 4.09531 4.48814 4.53483 4.54851 4.66579 4.68795 4.71377 4.95610 4.97540 5.03841 5.18997 5.19668 5.24234 5.33609 5.36476 5.41473 5.48685 5.49521 5.56999 5.65184 5.75639 5.76460 5.79314 5.96041 6.03555 6.14759 6.38356 6.43633 6.92574 6.96696 7.61961 7.71947 7.97518 8.32126 9.44613 9.95383 10.31832 11.38840 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002636 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.249084 B =10617.820611 C =12021.921074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 C -0.147 4.147 4 C -0.066 4.066 5 C -0.227 4.227 6 C 0.643 3.357 7 O -0.525 6.525 8 N -0.601 5.601 9 C 0.118 3.882 10 C -0.053 4.053 11 C -0.239 4.239 12 S 0.139 5.861 13 C 0.076 3.924 14 C 0.224 3.776 15 N -0.723 5.723 16 C -0.245 4.245 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 N -0.464 5.464 25 C 0.047 3.953 26 C 0.194 3.806 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.095 0.905 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 21.850 5.616 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 C -0.204 4.204 4 C -0.068 4.068 5 C -0.230 4.230 6 C 0.433 3.567 7 O -0.402 6.402 8 N -0.334 5.334 9 C -0.006 4.006 10 C -0.094 4.094 11 C -0.361 4.361 12 S 0.397 5.603 13 C -0.203 4.203 14 C 0.094 3.906 15 N -0.369 5.369 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 N -0.178 5.178 25 C -0.086 4.086 26 C 0.069 3.931 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.298 21.382 6.298 22.408 hybrid contribution 0.514 -0.301 -0.852 1.040 sum -1.783 21.081 5.446 21.846 Atomic orbital electron populations 1.21847 0.92548 1.03133 1.02894 1.18565 0.96457 0.95314 0.90857 1.21854 1.01747 0.93878 1.02895 1.22672 0.93107 0.96762 0.94252 1.20475 1.04803 1.01727 0.95974 1.14616 0.76829 0.80803 0.84500 1.90838 1.52221 1.65724 1.31435 1.47869 1.65353 1.06760 1.13376 1.21738 0.96242 0.94752 0.87833 1.20477 0.98746 0.96834 0.93305 1.25841 1.10103 1.00904 0.99207 1.83947 1.49797 1.17953 1.08576 1.27317 1.00658 0.97317 0.95019 1.19341 0.91485 0.85397 0.94397 1.42264 1.09163 1.22644 1.62822 1.19196 0.95378 0.98563 1.24431 0.90740 1.24779 0.95605 0.99182 1.01029 1.69677 1.02772 1.35613 1.49672 0.86128 0.77607 0.81934 0.80104 1.21561 1.21692 1.20596 1.65759 1.10825 1.03688 1.37490 1.20780 1.01765 0.98126 0.87954 1.20244 0.99778 0.87653 0.85429 0.92008 0.90999 0.91708 0.87756 0.91103 0.91954 0.91958 0.87517 0.89795 0.89783 0.88862 0.93934 0.92867 0.77939 0.93335 0.88676 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.15 37.16 0.34 -0.58 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16 3 C -0.15 -0.84 9.15 37.16 0.34 -0.50 16 4 C -0.07 -0.67 12.54 -37.12 -0.47 -1.14 16 5 C -0.23 -2.79 11.63 -38.84 -0.45 -3.24 16 6 C 0.64 8.65 7.56 -14.34 -0.11 8.54 16 7 O -0.52 -8.30 16.51 5.27 0.09 -8.22 16 8 N -0.60 -7.22 2.92 -175.92 -0.51 -7.73 16 9 C 0.12 1.20 6.41 -3.58 -0.02 1.18 16 10 C -0.05 -0.56 6.44 -27.59 -0.18 -0.74 16 11 C -0.24 -3.34 6.43 -35.44 -0.23 -3.57 16 12 S 0.14 2.11 23.17 -107.50 -2.49 -0.38 16 13 C 0.08 1.40 6.75 -13.60 -0.09 1.31 16 14 C 0.22 4.58 6.84 -5.19 -0.04 4.55 16 15 N -0.72 -18.35 5.59 -61.09 -0.34 -18.69 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 20 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 N -0.46 -8.44 10.51 -7.27 -0.08 -8.51 16 25 C 0.05 0.73 6.87 -82.80 -0.57 0.16 16 26 C 0.19 2.43 6.64 -4.10 -0.03 2.40 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 1.04 7.01 -51.93 -0.36 0.68 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.39 10.55 7.66 -40.82 -0.31 10.24 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.10 1.24 6.53 -51.93 -0.34 0.90 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -33.30 380.99 -10.00 -43.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.06 Total: 3.84 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.05 Total: 0.85 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.21 Total: -62.16 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.49 Total: -0.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.30 -10.00 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691804685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.175 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds