Wall clock time and date at job start Tue Mar 31 2020 17:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.47199 * 109.47162 * 119.99797 * 2 1 3 5 5 C 2.64605 * 109.47048 * 119.99647 * 2 1 3 6 6 C 4.07799 * 109.47077 * 119.99730 * 2 1 3 7 7 O 1.21613 * 120.00297 * 240.47297 * 6 5 4 8 8 N 1.34780 * 120.00281 * 60.47275 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47202 * 90.00160 * 20 18 16 22 22 H 1.48508 * 109.47186 * 209.99953 * 20 18 16 23 23 H 1.48499 * 109.47563 * 330.00239 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02683 * 8 6 5 27 27 H 1.09000 * 109.46970 * 300.00431 * 1 2 3 28 28 H 1.08993 * 109.46979 * 60.00337 * 1 2 3 29 29 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47413 * 239.99634 * 2 1 3 31 31 H 1.09001 * 109.47110 * 299.99547 * 3 2 1 32 32 H 1.09000 * 109.47511 * 59.99900 * 3 2 1 33 33 H 1.09006 * 109.47079 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 35 35 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 36 36 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 37 37 H 1.09000 * 109.64541 * 164.95490 * 10 9 8 38 38 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 39 39 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 40 40 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 41 41 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 43 43 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2472 2.1606 6 6 2.8893 -1.9222 3.3298 7 8 3.0838 -1.2983 4.3554 8 7 3.1231 -3.2491 3.2937 9 6 3.6139 -3.9599 4.4839 10 6 2.5410 -4.9575 4.9350 11 6 2.0148 -5.6923 3.7255 12 16 1.1168 -7.2054 3.7434 13 6 1.0008 -7.1672 2.0387 14 6 0.3104 -8.2097 1.1973 15 7 1.2701 -9.2534 0.8284 16 6 0.8679 -10.3123 0.0589 17 1 -0.1569 -10.3782 -0.2756 18 6 1.7772 -11.3009 -0.2911 19 7 3.0260 -11.2208 0.1170 20 14 1.2284 -12.7457 -1.3402 21 1 1.4142 -12.4140 -2.7757 22 1 2.0402 -13.9416 -0.9994 23 1 -0.2056 -13.0302 -1.0796 24 7 1.5879 -6.1191 1.5778 25 6 2.1522 -5.2942 2.4468 26 6 2.8945 -4.0206 2.0631 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 3.8076 -3.2446 5.2832 35 1 4.5310 -4.4951 4.2383 36 1 1.7250 -4.4215 5.4198 37 1 2.9753 -5.6712 5.6351 38 1 -0.5072 -8.6526 1.7661 39 1 -0.0852 -7.7444 0.2946 40 1 2.1904 -9.1943 1.1292 41 1 3.6614 -11.9118 -0.1273 42 1 3.8495 -4.2737 1.6028 43 1 2.2915 -3.4367 1.3677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691804685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:19 Heat of formation + Delta-G solvation = 50.382004 kcal Electronic energy + Delta-G solvation = -24860.131298 eV Core-core repulsion = 21225.926641 eV Total energy + Delta-G solvation = -3634.204657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74512 -40.47763 -37.73780 -37.37768 -36.49369 -34.11834 -33.48332 -32.53516 -31.22402 -28.48147 -28.08846 -27.59191 -25.44770 -25.32760 -23.89965 -23.23435 -21.87924 -20.03100 -19.61533 -18.99567 -18.51876 -17.72272 -17.05377 -16.84191 -16.79693 -16.08906 -15.91591 -15.60332 -15.41990 -15.24911 -15.00316 -14.95795 -14.42871 -14.12525 -14.07830 -13.86250 -13.69351 -13.13840 -13.10884 -12.98140 -12.97468 -12.77949 -12.57570 -12.47420 -12.34977 -12.19426 -12.12907 -11.88421 -11.69028 -11.38897 -11.19027 -11.04125 -10.64474 -10.27190 -10.04772 -9.68076 -9.10661 -7.97437 -5.29742 -0.39970 0.26571 0.37692 0.70847 1.11132 1.48943 1.51332 1.58273 1.61062 1.72203 2.32199 2.55489 2.73277 2.98901 3.37320 3.56925 3.75727 3.79704 3.93042 4.02714 4.05695 4.12748 4.14521 4.19619 4.24012 4.37665 4.45167 4.53633 4.67304 4.74761 4.76118 4.80198 4.83530 4.90265 4.91896 5.07745 5.09693 5.14398 5.29249 5.32208 5.47273 5.94587 6.12485 6.20700 6.67935 6.75227 7.28581 7.94157 8.21533 9.25908 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002636 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.249084 B =10617.820611 C =12021.921074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.001 3.999 3 C -0.144 4.144 4 C -0.039 4.039 5 C -0.275 4.275 6 C 0.644 3.356 7 O -0.556 6.556 8 N -0.597 5.597 9 C 0.114 3.886 10 C -0.051 4.051 11 C -0.224 4.224 12 S 0.173 5.827 13 C 0.037 3.963 14 C 0.227 3.773 15 N -0.736 5.736 16 C -0.248 4.248 17 H 0.085 0.915 18 C -0.072 4.072 19 N -0.969 5.969 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.265 1.265 24 N -0.482 5.482 25 C 0.025 3.975 26 C 0.201 3.799 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.373 0.627 41 H 0.253 0.747 42 H 0.105 0.895 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 22.723 5.564 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 C -0.201 4.201 4 C -0.042 4.042 5 C -0.278 4.278 6 C 0.434 3.566 7 O -0.437 6.437 8 N -0.328 5.328 9 C -0.008 4.008 10 C -0.092 4.092 11 C -0.346 4.346 12 S 0.431 5.569 13 C -0.241 4.241 14 C 0.098 3.902 15 N -0.380 5.380 16 C -0.379 4.379 17 H 0.103 0.897 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.189 1.189 24 N -0.197 5.197 25 C -0.108 4.108 26 C 0.076 3.924 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.123 0.877 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.985 22.260 6.239 23.310 hybrid contribution 0.672 -0.438 -0.792 1.128 sum -2.312 21.822 5.447 22.610 Atomic orbital electron populations 1.21856 0.91852 1.02731 1.03811 1.18892 0.96941 0.95978 0.89872 1.21860 1.01607 0.92914 1.03731 1.23481 0.91225 0.95311 0.94160 1.20557 1.06800 1.03515 0.96945 1.14751 0.76300 0.81055 0.84452 1.90807 1.53883 1.66353 1.32615 1.47906 1.64736 1.06437 1.13734 1.21924 0.96619 0.94786 0.87489 1.20664 0.99149 0.97124 0.92230 1.26359 1.08171 0.99995 1.00087 1.83715 1.49300 1.18243 1.05617 1.26879 1.02776 0.97701 0.96760 1.19302 0.91036 0.84979 0.94884 1.42422 1.09332 1.23549 1.62656 1.19645 0.95774 0.98918 1.23606 0.89720 1.25641 0.95751 1.02153 1.02919 1.69839 1.03951 1.36543 1.51590 0.85060 0.77773 0.78277 0.78117 1.21425 1.22194 1.18935 1.65701 1.10788 1.04029 1.39162 1.21123 1.02560 0.98871 0.88217 1.20227 0.99943 0.86566 0.85663 0.92531 0.88701 0.92755 0.85999 0.88803 0.92616 0.92204 0.86802 0.88313 0.88939 0.86257 0.92432 0.93349 0.79503 0.93872 0.87676 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.15 71.98 0.66 -0.92 16 2 C 0.00 0.01 3.30 -12.60 -0.04 -0.03 16 3 C -0.14 -1.36 9.15 71.98 0.66 -0.70 16 4 C -0.04 -0.78 12.54 31.12 0.39 -0.39 16 5 C -0.28 -6.74 11.63 30.01 0.35 -6.39 16 6 C 0.64 17.20 7.56 85.49 0.65 17.85 16 7 O -0.56 -17.64 16.51 -4.07 -0.07 -17.70 16 8 N -0.60 -13.80 2.92 -828.72 -2.42 -16.22 16 9 C 0.11 2.13 6.41 86.37 0.55 2.69 16 10 C -0.05 -0.96 6.44 30.04 0.19 -0.77 16 11 C -0.22 -5.93 6.43 24.95 0.16 -5.77 16 12 S 0.17 5.08 23.17 -56.49 -1.31 3.77 16 13 C 0.04 1.35 6.75 88.57 0.60 1.95 16 14 C 0.23 9.34 6.84 85.64 0.59 9.93 16 15 N -0.74 -37.80 5.59 -347.19 -1.94 -39.74 16 16 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 20 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 N -0.48 -17.55 10.51 -176.92 -1.86 -19.40 16 25 C 0.03 0.76 6.87 42.16 0.29 1.05 16 26 C 0.20 4.89 6.64 86.05 0.57 5.46 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.11 2.03 7.01 -2.39 -0.02 2.01 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.37 20.84 7.66 -92.71 -0.71 20.13 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.49 6.53 -2.38 -0.02 2.48 16 Total: -1.00 -72.47 380.99 1.97 -70.50 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.33 Total: 22.82 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.92 Total: 7.49 kcal Atomic # 7 Polarization: -128.39 SS G_CDS: -5.94 Total: -134.32 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.70 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.31 Total: 3.77 kcal Total: -72.47 1.97 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691804685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.883 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds