Wall clock time and date at job start Tue Mar 31 2020 18:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46965 * 180.02562 * 18 16 15 20 20 N 1.28733 * 121.08659 * 90.02702 * 19 18 16 21 21 S 1.69391 * 108.98485 * 180.02562 * 20 19 18 22 22 C 1.76507 * 96.12263 * 359.97438 * 21 20 19 23 23 C 1.38786 * 133.55907 * 180.02562 * 22 21 20 24 24 C 1.36711 * 119.76020 * 179.97438 * 23 22 21 25 25 C 1.38978 * 120.15052 * 0.02562 * 24 23 22 26 26 C 1.36041 * 121.15962 * 359.97438 * 25 24 23 27 27 C 1.40819 * 105.51800 * 359.74307 * 22 21 20 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 32 32 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 36 36 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 37 37 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 38 38 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 39 39 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 40 40 H 1.08004 * 120.11876 * 359.95921 * 23 22 21 41 41 H 1.07999 * 119.92733 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.41847 * 180.02562 * 25 24 23 43 43 H 1.07996 * 119.89434 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.0363 -1.2230 -7.0286 12 1 2.2736 0.8230 -7.4332 13 1 3.3803 -1.0836 -6.4231 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.0994 -0.3453 6.1237 20 7 3.2629 -0.0886 6.6111 21 16 3.5118 -1.0535 7.9809 22 6 1.9504 -1.8743 7.9192 23 6 1.3483 -2.8447 8.7077 24 6 0.0945 -3.2913 8.3951 25 6 -0.5750 -2.7762 7.2915 26 6 -0.0054 -1.8245 6.5038 27 6 1.2855 -1.3355 6.8009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.6804 1.9069 -5.4839 35 1 1.6053 -1.7197 1.2952 36 1 3.1263 -0.7995 1.2056 37 1 1.1487 0.8594 2.3518 38 1 2.0324 1.3633 4.8474 39 1 0.5109 0.4440 4.9368 40 1 1.8684 -3.2459 9.5651 41 1 -0.3764 -4.0467 9.0067 42 1 -1.5652 -3.1372 7.0557 43 1 -0.5442 -1.4382 5.6513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698778538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:26 Heat of formation + Delta-G solvation = 15.409750 kcal Electronic energy + Delta-G solvation = -24672.929620 eV Core-core repulsion = 21037.208453 eV Total energy + Delta-G solvation = -3635.721168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.60902 -39.55933 -37.28185 -36.64469 -34.40245 -32.63698 -31.78231 -30.89402 -30.62789 -29.78377 -26.51464 -25.32918 -23.92962 -23.28639 -22.51893 -21.19824 -20.39678 -19.66948 -18.89819 -17.51390 -16.86811 -16.79375 -16.32301 -15.80698 -15.56809 -15.35186 -14.82204 -14.62667 -14.50538 -14.22894 -13.82900 -13.74136 -13.54264 -13.10373 -12.89519 -12.58054 -12.41555 -12.39838 -12.16431 -12.07178 -11.99182 -11.14456 -11.08238 -10.93013 -10.84286 -10.72001 -10.60152 -10.45611 -10.27744 -10.10150 -9.92541 -9.68209 -9.35590 -9.10471 -8.88842 -8.21856 -6.93596 -5.78247 -3.06608 0.12958 0.76648 1.08470 1.45883 1.71195 2.48238 3.05236 3.27079 3.43265 3.48675 3.50250 3.86084 4.06983 4.43564 4.49166 4.58260 4.69208 4.73755 4.82744 4.86621 5.03010 5.04676 5.18086 5.20125 5.35524 5.42336 5.56621 5.60792 5.76617 5.77920 5.92858 5.95302 5.96629 6.08023 6.20833 6.21407 6.34649 6.35612 6.42617 6.62880 6.75437 6.84469 7.37254 7.69611 8.08073 8.40919 9.52248 10.09295 10.44113 11.44712 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.001849 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.018173 B =15140.443838 C =15544.890020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.722 5.722 16 C 0.517 3.483 17 O -0.531 6.531 18 C -0.081 4.081 19 C 0.181 3.819 20 N -0.429 5.429 21 S 0.189 5.811 22 C -0.134 4.134 23 C -0.082 4.082 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.048 4.048 27 C -0.121 4.121 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 -4.384 30.658 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.004 3.996 15 N -0.374 5.374 16 C 0.301 3.699 17 O -0.408 6.408 18 C -0.126 4.126 19 C -0.010 4.010 20 N -0.240 5.240 21 S 0.344 5.656 22 C -0.254 4.254 23 C -0.105 4.105 24 C -0.105 4.105 25 C -0.144 4.144 26 C -0.070 4.070 27 C -0.133 4.133 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.926 -4.488 31.211 31.591 hybrid contribution -1.711 -0.091 -1.626 2.362 sum -3.637 -4.580 29.586 30.158 Atomic orbital electron populations 1.21791 0.94621 1.01931 1.01514 1.21555 0.96731 1.00538 0.94133 0.90467 1.20576 0.96646 0.94207 0.85385 1.42334 1.66972 1.27646 1.00576 1.19238 1.28583 1.05509 0.83640 0.91160 1.24738 1.00998 0.97465 0.97872 1.69653 1.43344 1.16848 1.28477 0.86174 0.78031 0.77523 0.84387 1.21727 1.21781 1.20752 1.21438 1.00249 0.95233 0.82725 1.45999 1.57736 1.27979 1.05691 1.20107 0.79918 0.85716 0.84179 1.90762 1.39231 1.24223 1.86540 1.20509 1.03550 1.00309 0.88254 1.21776 0.89487 0.93930 0.95795 1.75696 1.17850 1.21917 1.08523 1.84835 1.16069 1.35231 1.29417 1.23505 0.99928 1.02194 0.99822 1.19995 0.95490 0.95758 0.99250 1.21069 0.94018 0.98665 0.96743 1.20788 1.00796 0.97352 0.95434 1.20688 0.92117 0.95484 0.98683 1.20093 0.97293 0.99510 0.96369 0.93876 0.91126 0.92823 0.95999 0.96126 0.78203 0.93534 0.91257 0.91307 0.76338 0.86175 0.86329 0.84884 0.84678 0.84874 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.94 37.15 0.33 -1.62 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.11 5.33 -59.91 -0.32 -18.43 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -7.65 5.28 -60.30 -0.32 -7.96 16 16 C 0.52 6.16 7.82 -10.99 -0.09 6.07 16 17 O -0.53 -8.81 16.03 5.55 0.09 -8.72 16 18 C -0.08 -0.69 5.97 -29.04 -0.17 -0.86 16 19 C 0.18 2.05 5.37 -81.23 -0.44 1.61 16 20 N -0.43 -5.58 11.84 34.00 0.40 -5.17 16 21 S 0.19 2.11 23.86 -107.50 -2.56 -0.46 16 22 C -0.13 -1.38 6.71 -38.40 -0.26 -1.64 16 23 C -0.08 -0.63 10.02 -39.93 -0.40 -1.03 16 24 C -0.08 -0.51 10.01 -39.86 -0.40 -0.90 16 25 C -0.12 -0.80 9.92 -40.10 -0.40 -1.20 16 26 C -0.05 -0.38 9.72 -39.25 -0.38 -0.76 16 27 C -0.12 -1.27 6.04 -105.14 -0.64 -1.90 16 28 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 29 H 0.07 1.17 7.18 -51.93 -0.37 0.79 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.14 7.66 -40.82 -0.31 2.83 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 0.58 7.54 -51.93 -0.39 0.18 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.78 7.64 -52.49 -0.40 0.38 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -35.54 376.83 -10.58 -46.12 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.90 Total: 5.44 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.35 Total: -6.65 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.49 Total: -58.79 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.56 Total: -0.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.54 -10.58 -46.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698778538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.530 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds