Wall clock time and date at job start Tue Mar 31 2020 18:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46965 * 180.02562 * 18 16 15 20 20 N 1.28733 * 121.08659 * 90.02702 * 19 18 16 21 21 S 1.69391 * 108.98485 * 180.02562 * 20 19 18 22 22 C 1.76507 * 96.12263 * 359.97438 * 21 20 19 23 23 C 1.38786 * 133.55907 * 180.02562 * 22 21 20 24 24 C 1.36711 * 119.76020 * 179.97438 * 23 22 21 25 25 C 1.38978 * 120.15052 * 0.02562 * 24 23 22 26 26 C 1.36041 * 121.15962 * 359.97438 * 25 24 23 27 27 C 1.40819 * 105.51800 * 359.74307 * 22 21 20 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 32 32 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 36 36 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 37 37 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 38 38 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 39 39 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 40 40 H 1.08004 * 120.11876 * 359.95921 * 23 22 21 41 41 H 1.07999 * 119.92733 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.41847 * 180.02562 * 25 24 23 43 43 H 1.07996 * 119.89434 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.0363 -1.2230 -7.0286 12 1 2.2736 0.8230 -7.4332 13 1 3.3803 -1.0836 -6.4231 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.0994 -0.3453 6.1237 20 7 3.2629 -0.0886 6.6111 21 16 3.5118 -1.0535 7.9809 22 6 1.9504 -1.8743 7.9192 23 6 1.3483 -2.8447 8.7077 24 6 0.0945 -3.2913 8.3951 25 6 -0.5750 -2.7762 7.2915 26 6 -0.0054 -1.8245 6.5038 27 6 1.2855 -1.3355 6.8009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.6804 1.9069 -5.4839 35 1 1.6053 -1.7197 1.2952 36 1 3.1263 -0.7995 1.2056 37 1 1.1487 0.8594 2.3518 38 1 2.0324 1.3633 4.8474 39 1 0.5109 0.4440 4.9368 40 1 1.8684 -3.2459 9.5651 41 1 -0.3764 -4.0467 9.0067 42 1 -1.5652 -3.1372 7.0557 43 1 -0.5442 -1.4382 5.6513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698778538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:25 Heat of formation + Delta-G solvation = -8.495104 kcal Electronic energy + Delta-G solvation = -24673.966213 eV Core-core repulsion = 21037.208453 eV Total energy + Delta-G solvation = -3636.757760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37900 -40.39939 -38.34539 -37.63961 -35.95639 -34.16398 -32.50751 -31.98638 -31.47667 -30.95438 -27.71493 -26.97999 -24.78735 -24.20659 -23.77362 -22.10835 -21.50229 -20.72763 -19.55710 -19.20986 -18.10983 -17.41927 -17.36796 -16.70845 -16.54838 -16.21526 -16.00791 -15.76083 -15.58960 -15.38769 -15.02850 -14.87787 -14.48453 -14.40351 -14.17339 -13.69886 -13.54059 -13.26773 -13.07914 -12.96262 -12.87066 -12.78255 -12.60097 -12.19092 -12.15694 -11.97610 -11.79106 -11.70224 -11.64730 -11.60396 -11.11577 -10.94293 -10.78698 -10.11958 -9.97163 -8.99106 -8.95558 -7.95558 -5.23557 -0.52908 0.19761 0.36479 0.70802 1.01115 1.47778 1.48903 1.57137 1.57450 2.19152 2.56619 2.66497 3.18207 3.38048 3.44605 3.73636 3.76295 3.96985 3.98300 4.04811 4.12031 4.22238 4.30376 4.36343 4.37155 4.47634 4.56746 4.65124 4.72002 4.80788 4.92712 4.96104 5.03555 5.08846 5.14415 5.26359 5.33564 5.42506 5.42823 5.49876 5.52277 5.53563 5.83839 6.27365 6.51694 7.20473 7.34297 8.09541 8.34096 9.27711 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.001849 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.018173 B =15140.443838 C =15544.890020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.155 3.845 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.273 1.273 14 C 0.140 3.860 15 N -0.707 5.707 16 C 0.520 3.480 17 O -0.583 6.583 18 C -0.075 4.075 19 C 0.176 3.824 20 N -0.468 5.468 21 S 0.154 5.846 22 C -0.149 4.149 23 C -0.095 4.095 24 C -0.073 4.073 25 C -0.122 4.122 26 C -0.056 4.056 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.021 0.979 32 H 0.015 0.985 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.419 0.581 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -5.119 31.654 32.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.198 1.198 14 C 0.015 3.985 15 N -0.360 5.360 16 C 0.305 3.695 17 O -0.462 6.462 18 C -0.120 4.120 19 C -0.014 4.014 20 N -0.279 5.279 21 S 0.310 5.690 22 C -0.269 4.269 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.142 4.142 26 C -0.078 4.078 27 C -0.158 4.158 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.991 -5.213 32.231 32.892 hybrid contribution -1.138 0.033 -1.861 2.182 sum -5.129 -5.180 30.370 31.232 Atomic orbital electron populations 1.21730 0.93447 1.02039 1.02012 1.21328 0.97486 0.99984 0.92476 0.90276 1.20736 0.96364 0.94235 0.85868 1.42496 1.66819 1.27806 1.01280 1.19612 1.27798 1.05353 0.85107 0.91003 1.25533 1.01690 0.97976 1.01454 1.69794 1.44773 1.18043 1.29089 0.85160 0.77992 0.76832 0.79898 1.21312 1.22066 1.19763 1.21104 0.99214 0.95175 0.83012 1.45791 1.57432 1.28226 1.04591 1.20621 0.78719 0.85089 0.85036 1.90750 1.41552 1.26689 1.87235 1.20651 1.06182 0.99925 0.85196 1.22295 0.89109 0.93788 0.96208 1.75683 1.19180 1.23477 1.09601 1.84696 1.18074 1.36388 1.29867 1.23725 0.99101 1.03259 1.00838 1.20375 0.96402 0.95348 0.99657 1.21547 0.93068 0.98299 0.96582 1.21255 1.01932 0.96256 0.94752 1.21053 0.91258 0.95806 0.99669 1.20349 0.98525 1.00150 0.96788 0.89905 0.94024 0.92916 0.96076 0.96656 0.78987 0.93944 0.91621 0.92844 0.74301 0.84349 0.82047 0.83201 0.81263 0.81774 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.94 71.98 0.64 -2.84 16 2 C -0.09 -2.65 2.46 -10.80 -0.03 -2.68 16 3 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 4 C 0.16 6.05 5.65 86.38 0.49 6.54 16 5 N -0.74 -36.94 5.33 -343.46 -1.83 -38.77 16 6 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 7 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 8 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 9 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 10 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.14 3.52 5.06 86.38 0.44 3.96 16 15 N -0.71 -13.35 5.28 -463.07 -2.45 -15.79 16 16 C 0.52 11.53 7.82 87.66 0.69 12.22 16 17 O -0.58 -19.21 16.03 -3.05 -0.05 -19.25 16 18 C -0.08 -1.11 5.97 29.10 0.17 -0.94 16 19 C 0.18 3.90 5.37 44.74 0.24 4.14 16 20 N -0.47 -12.57 11.84 -46.33 -0.55 -13.11 16 21 S 0.15 3.66 23.86 -56.49 -1.35 2.31 16 22 C -0.15 -3.04 6.71 23.03 0.15 -2.88 16 23 C -0.10 -1.31 10.02 22.04 0.22 -1.09 16 24 C -0.07 -0.66 10.01 22.09 0.22 -0.44 16 25 C -0.12 -1.14 9.92 21.94 0.22 -0.93 16 26 C -0.06 -0.75 9.72 22.49 0.22 -0.53 16 27 C -0.15 -2.93 6.04 -20.20 -0.12 -3.05 16 28 H 0.08 1.46 7.18 -2.39 -0.02 1.45 16 29 H 0.04 1.33 7.18 -2.38 -0.02 1.32 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.38 19.60 6.85 -92.70 -0.64 18.96 16 34 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.42 5.08 7.66 -92.71 -0.71 4.37 16 38 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.16 0.92 7.54 -2.39 -0.02 0.90 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 42 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.15 1.25 7.64 -2.91 -0.02 1.23 16 Total: -1.00 -79.92 376.83 0.65 -79.27 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.30 Total: 20.48 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.86 Total: -5.24 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.54 Total: -125.69 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.35 Total: 2.31 kcal Total: -79.92 0.65 -79.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698778538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.773 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds