Wall clock time and date at job start Tue Mar 31 2020 18:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47134 * 2 1 4 4 C 1.52990 * 109.47380 * 239.99541 * 2 1 3 5 5 N 1.46500 * 109.47469 * 184.99873 * 4 2 1 6 6 C 1.36935 * 120.00304 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99953 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00184 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99984 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46854 * 89.99789 * 10 8 6 12 12 H 1.48498 * 109.47083 * 209.99453 * 10 8 6 13 13 H 1.48503 * 109.47123 * 329.99770 * 10 8 6 14 14 N 1.46507 * 109.47190 * 119.99142 * 2 1 3 15 15 C 1.46499 * 119.99639 * 60.00410 * 14 2 1 16 16 C 1.34771 * 119.99976 * 240.00519 * 14 2 1 17 17 O 1.21760 * 120.00622 * 0.58285 * 16 14 2 18 18 C 1.46114 * 119.99740 * 180.59176 * 16 14 2 19 19 S 1.75819 * 125.47779 * 349.49109 * 18 16 14 20 20 C 1.70568 * 91.67650 * 180.02562 * 19 18 16 21 21 C 1.33576 * 111.17402 * 359.97438 * 20 19 18 22 22 C 1.37355 * 125.48083 * 169.51677 * 18 16 14 23 23 N 1.39881 * 123.48485 * 0.02562 * 22 18 16 24 24 C 1.36605 * 125.67301 * 309.69375 * 23 22 18 25 25 C 1.34839 * 108.19582 * 179.82683 * 24 23 22 26 26 C 1.40966 * 107.47541 * 0.43085 * 25 24 23 27 27 C 1.34838 * 107.47118 * 359.72896 * 26 25 24 28 28 H 1.09001 * 109.47189 * 60.00444 * 1 2 3 29 29 H 1.09003 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47292 * 300.00521 * 1 2 3 31 31 H 1.09001 * 109.47197 * 304.99962 * 4 2 1 32 32 H 1.09005 * 109.47420 * 64.99877 * 4 2 1 33 33 H 0.97006 * 119.99947 * 359.97438 * 5 4 2 34 34 H 0.97000 * 120.00014 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.46979 * 263.63064 * 15 14 2 36 36 H 1.08998 * 109.47394 * 23.62719 * 15 14 2 37 37 H 1.08995 * 109.47328 * 143.62787 * 15 14 2 38 38 H 1.07994 * 124.41366 * 179.97438 * 20 19 18 39 39 H 1.08002 * 122.46038 * 180.02562 * 21 20 19 40 40 H 1.07992 * 125.90242 * 0.02562 * 24 23 22 41 41 H 1.08001 * 126.26166 * 180.16024 * 25 24 23 42 42 H 1.07996 * 126.26613 * 179.71014 * 26 25 24 43 43 H 1.08005 * 125.89709 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1839 -1.4380 -2.2070 7 1 3.6469 -1.8432 -3.0518 8 6 5.5673 -1.5380 -2.1511 9 7 6.2218 -1.0446 -1.1213 10 14 6.5002 -2.3730 -3.5375 11 1 6.8629 -1.3659 -4.5669 12 1 7.7354 -2.9962 -2.9980 13 1 5.6439 -3.4204 -4.1499 14 7 2.0184 -0.6905 1.1963 15 6 1.6645 -2.0930 1.4282 16 6 2.7931 -0.0353 2.0834 17 8 3.0785 1.1334 1.8961 18 6 3.2908 -0.7277 3.2699 19 16 2.7677 -2.3133 3.8207 20 6 3.8270 -2.2542 5.1562 21 6 4.5204 -1.1127 5.1719 22 6 4.2422 -0.2443 4.1347 23 7 4.8643 0.9991 3.9810 24 6 5.4511 1.4603 2.8369 25 6 5.9349 2.6952 3.0800 26 6 5.6463 3.0058 4.4244 27 6 4.9913 1.9517 4.9518 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -1.7199 -1.2949 32 1 1.7517 -0.1585 -2.1369 33 1 3.9825 -0.4621 -0.4318 34 1 7.1885 -1.1141 -1.0824 35 1 0.8026 -2.1450 2.0934 36 1 1.4194 -2.5678 0.4782 37 1 2.5082 -2.6098 1.8856 38 1 3.9244 -3.0377 5.8932 39 1 5.2453 -0.8852 5.9396 40 1 5.5136 0.9291 1.8987 41 1 6.4531 3.3285 2.3751 42 1 5.9030 3.9204 4.9381 43 1 4.6293 1.8742 5.9664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698838310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:33 Heat of formation + Delta-G solvation = 87.534919 kcal Electronic energy + Delta-G solvation = -27207.258804 eV Core-core repulsion = 23574.665218 eV Total energy + Delta-G solvation = -3632.593586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18420 -39.64000 -37.60140 -36.23594 -34.08654 -32.23850 -31.59388 -30.20253 -28.92505 -28.21739 -26.96197 -25.67950 -24.69642 -22.77709 -21.91081 -20.98533 -19.94339 -19.50449 -18.73987 -18.03078 -17.13348 -16.98179 -16.08139 -15.41432 -15.33556 -14.79276 -14.55709 -14.16325 -13.74299 -13.62453 -13.38550 -13.30594 -13.16753 -13.06901 -12.85582 -12.47801 -12.32937 -12.26499 -12.10806 -12.00297 -11.87500 -11.61557 -11.48244 -10.86876 -10.77574 -10.67718 -10.50795 -10.06517 -9.71358 -9.64985 -9.20082 -8.88258 -8.76898 -8.41013 -7.87251 -7.65193 -6.91513 -5.74525 -3.03840 0.38986 1.33536 1.78651 2.08922 2.88587 3.11831 3.32951 3.43261 3.44081 3.48161 3.50116 3.54285 4.56351 4.63604 4.90699 5.06168 5.12837 5.21406 5.29680 5.35188 5.49465 5.53247 5.58174 5.60502 5.74766 5.78515 5.81445 5.96434 5.98901 6.03907 6.10571 6.13910 6.14983 6.32391 6.44806 6.66315 6.69923 6.75859 6.90379 7.40608 7.56118 7.64625 7.69385 7.86541 8.41245 8.43000 9.54681 10.12171 10.47628 11.47543 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004941 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.179154 B = 5665.048002 C = 6507.080324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.103 0.897 4 C 0.143 3.857 5 N -0.727 5.727 6 C -0.242 4.242 7 H 0.069 0.931 8 C -0.010 4.010 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.590 5.590 15 C 0.067 3.933 16 C 0.587 3.413 17 O -0.510 6.510 18 C -0.269 4.269 19 S 0.268 5.732 20 C -0.255 4.255 21 C -0.149 4.149 22 C 0.184 3.816 23 N -0.387 5.387 24 C 0.058 3.942 25 C -0.212 4.212 26 C -0.188 4.188 27 C -0.029 4.029 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -2.200 14.265 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.121 0.879 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.323 5.323 15 C -0.078 4.078 16 C 0.374 3.626 17 O -0.387 6.387 18 C -0.392 4.392 19 S 0.537 5.463 20 C -0.392 4.392 21 C -0.180 4.180 22 C 0.076 3.924 23 N -0.062 5.062 24 C -0.070 4.070 25 C -0.235 4.235 26 C -0.213 4.213 27 C -0.155 4.155 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.187 0.813 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.124 -3.031 13.559 17.798 hybrid contribution 1.948 0.444 0.099 2.001 sum -9.176 -2.587 13.658 16.656 Atomic orbital electron populations 1.22066 0.94931 1.02113 1.02228 1.21450 0.93371 0.98604 0.84041 0.87861 1.21017 0.87234 0.96714 0.93576 1.42284 0.99584 1.70177 1.25141 1.19182 0.89424 1.29621 0.99134 0.91309 1.24728 0.96419 1.01588 0.97954 1.69664 1.07162 1.50654 1.30040 0.86230 0.79538 0.79002 0.81614 1.21726 1.21843 1.20869 1.47485 1.50501 1.11677 1.22591 1.21913 1.00076 0.82682 1.03173 1.16691 0.78540 0.86169 0.81209 1.90914 1.57051 1.15243 1.75488 1.24606 1.07167 1.02338 1.05066 1.83543 1.37836 1.11708 1.13263 1.25604 1.05320 1.02305 1.06007 1.19679 1.03896 0.93665 1.00796 1.16911 0.93197 0.86792 0.95456 1.40894 1.43304 1.10628 1.11349 1.22067 0.98278 0.96515 0.90139 1.20830 1.09128 0.96715 0.96872 1.20827 1.05826 0.98926 0.95746 1.21673 1.08891 0.90463 0.94433 0.91201 0.92360 0.92589 0.96188 0.95207 0.78036 0.93536 0.92271 0.88510 0.90894 0.81255 0.83767 0.81597 0.84717 0.84942 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 2 C 0.13 2.15 2.79 -67.93 -0.19 1.96 16 3 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 4 C 0.14 2.80 5.52 -4.05 -0.02 2.78 16 5 N -0.73 -18.38 5.43 -59.91 -0.33 -18.71 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 10 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.59 -9.77 2.24 -175.69 -0.39 -10.16 16 15 C 0.07 0.88 7.93 59.85 0.47 1.35 16 16 C 0.59 11.01 7.18 -13.10 -0.09 10.91 16 17 O -0.51 -11.18 12.94 5.14 0.07 -11.11 16 18 C -0.27 -4.41 6.19 -36.75 -0.23 -4.64 16 19 S 0.27 3.04 17.91 -107.50 -1.93 1.11 16 20 C -0.26 -2.72 10.90 29.10 0.32 -2.40 16 21 C -0.15 -1.93 9.97 -41.26 -0.41 -2.34 16 22 C 0.18 3.02 5.98 -84.55 -0.51 2.51 16 23 N -0.39 -6.93 2.59 -61.59 -0.16 -7.09 16 24 C 0.06 1.16 8.62 -16.63 -0.14 1.02 16 25 C -0.21 -3.91 10.86 -39.75 -0.43 -4.34 16 26 C -0.19 -3.02 10.86 -39.75 -0.43 -3.46 16 27 C -0.03 -0.45 11.24 -16.63 -0.19 -0.64 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.63 7.67 -51.93 -0.40 0.24 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.38 6.87 -51.93 -0.36 0.02 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.39 10.60 7.07 -40.82 -0.29 10.31 16 34 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 35 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 36 H 0.10 1.25 6.54 -51.93 -0.34 0.91 16 37 H 0.07 0.99 4.65 -23.58 -0.11 0.88 16 38 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.17 3.83 7.76 -52.49 -0.41 3.42 16 41 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -34.02 363.83 -8.90 -42.92 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.59 Total: 13.63 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.76 Total: -6.14 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.15 Total: -63.34 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.93 Total: 1.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.02 -8.90 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698838310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.456 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds