Wall clock time and date at job start Tue Mar 31 2020 18:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47134 * 2 1 4 4 C 1.52990 * 109.47380 * 239.99541 * 2 1 3 5 5 N 1.46500 * 109.47469 * 184.99873 * 4 2 1 6 6 C 1.36935 * 120.00304 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99953 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00184 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99984 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46854 * 89.99789 * 10 8 6 12 12 H 1.48498 * 109.47083 * 209.99453 * 10 8 6 13 13 H 1.48503 * 109.47123 * 329.99770 * 10 8 6 14 14 N 1.46507 * 109.47190 * 119.99142 * 2 1 3 15 15 C 1.46499 * 119.99639 * 60.00410 * 14 2 1 16 16 C 1.34771 * 119.99976 * 240.00519 * 14 2 1 17 17 O 1.21760 * 120.00622 * 0.58285 * 16 14 2 18 18 C 1.46114 * 119.99740 * 180.59176 * 16 14 2 19 19 S 1.75819 * 125.47779 * 349.49109 * 18 16 14 20 20 C 1.70568 * 91.67650 * 180.02562 * 19 18 16 21 21 C 1.33576 * 111.17402 * 359.97438 * 20 19 18 22 22 C 1.37355 * 125.48083 * 169.51677 * 18 16 14 23 23 N 1.39881 * 123.48485 * 0.02562 * 22 18 16 24 24 C 1.36605 * 125.67301 * 309.69375 * 23 22 18 25 25 C 1.34839 * 108.19582 * 179.82683 * 24 23 22 26 26 C 1.40966 * 107.47541 * 0.43085 * 25 24 23 27 27 C 1.34838 * 107.47118 * 359.72896 * 26 25 24 28 28 H 1.09001 * 109.47189 * 60.00444 * 1 2 3 29 29 H 1.09003 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47292 * 300.00521 * 1 2 3 31 31 H 1.09001 * 109.47197 * 304.99962 * 4 2 1 32 32 H 1.09005 * 109.47420 * 64.99877 * 4 2 1 33 33 H 0.97006 * 119.99947 * 359.97438 * 5 4 2 34 34 H 0.97000 * 120.00014 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.46979 * 263.63064 * 15 14 2 36 36 H 1.08998 * 109.47394 * 23.62719 * 15 14 2 37 37 H 1.08995 * 109.47328 * 143.62787 * 15 14 2 38 38 H 1.07994 * 124.41366 * 179.97438 * 20 19 18 39 39 H 1.08002 * 122.46038 * 180.02562 * 21 20 19 40 40 H 1.07992 * 125.90242 * 0.02562 * 24 23 22 41 41 H 1.08001 * 126.26166 * 180.16024 * 25 24 23 42 42 H 1.07996 * 126.26613 * 179.71014 * 26 25 24 43 43 H 1.08005 * 125.89709 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1839 -1.4380 -2.2070 7 1 3.6469 -1.8432 -3.0518 8 6 5.5673 -1.5380 -2.1511 9 7 6.2218 -1.0446 -1.1213 10 14 6.5002 -2.3730 -3.5375 11 1 6.8629 -1.3659 -4.5669 12 1 7.7354 -2.9962 -2.9980 13 1 5.6439 -3.4204 -4.1499 14 7 2.0184 -0.6905 1.1963 15 6 1.6645 -2.0930 1.4282 16 6 2.7931 -0.0353 2.0834 17 8 3.0785 1.1334 1.8961 18 6 3.2908 -0.7277 3.2699 19 16 2.7677 -2.3133 3.8207 20 6 3.8270 -2.2542 5.1562 21 6 4.5204 -1.1127 5.1719 22 6 4.2422 -0.2443 4.1347 23 7 4.8643 0.9991 3.9810 24 6 5.4511 1.4603 2.8369 25 6 5.9349 2.6952 3.0800 26 6 5.6463 3.0058 4.4244 27 6 4.9913 1.9517 4.9518 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -1.7199 -1.2949 32 1 1.7517 -0.1585 -2.1369 33 1 3.9825 -0.4621 -0.4318 34 1 7.1885 -1.1141 -1.0824 35 1 0.8026 -2.1450 2.0934 36 1 1.4194 -2.5678 0.4782 37 1 2.5082 -2.6098 1.8856 38 1 3.9244 -3.0377 5.8932 39 1 5.2453 -0.8852 5.9396 40 1 5.5136 0.9291 1.8987 41 1 6.4531 3.3285 2.3751 42 1 5.9030 3.9204 4.9381 43 1 4.6293 1.8742 5.9664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698838310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:32 Heat of formation + Delta-G solvation = 66.500848 kcal Electronic energy + Delta-G solvation = -27208.170909 eV Core-core repulsion = 23574.665218 eV Total energy + Delta-G solvation = -3633.505691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46551 -40.98078 -38.72568 -37.68235 -35.89874 -33.80437 -32.82403 -31.99540 -30.15108 -29.50261 -28.11074 -27.41043 -25.86358 -24.53379 -23.25719 -22.20846 -21.27144 -20.85821 -20.00414 -19.27983 -19.10532 -18.27423 -17.24279 -16.90486 -16.65091 -16.40063 -15.75476 -15.41904 -15.33871 -15.20106 -14.95713 -14.63966 -14.32998 -14.24154 -14.07297 -13.84172 -13.72446 -13.54801 -13.35806 -13.24231 -13.12743 -13.01318 -12.94965 -12.82140 -12.52153 -12.16115 -11.85685 -11.76225 -11.62701 -11.07080 -10.94223 -10.35584 -9.80919 -9.71088 -9.03695 -9.01539 -9.00433 -7.93744 -5.23947 -0.71178 0.30236 0.82433 1.02877 1.43768 1.46382 1.54428 1.59287 1.85818 2.08726 2.13689 2.19441 2.54106 3.39063 3.45934 3.83925 3.95599 4.00507 4.04263 4.07944 4.24811 4.30944 4.36470 4.41455 4.52005 4.53761 4.65684 4.68349 4.79233 4.81658 4.87339 4.93575 4.96825 5.03209 5.11175 5.27810 5.32158 5.41183 5.46995 5.57834 6.06143 6.23680 6.24556 6.31402 6.58669 7.08638 7.31647 8.07678 8.30918 9.28601 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004941 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.179154 B = 5665.048002 C = 6507.080324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.133 3.867 3 H 0.065 0.935 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.075 4.075 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.292 1.292 12 H -0.298 1.298 13 H -0.264 1.264 14 N -0.591 5.591 15 C 0.059 3.941 16 C 0.574 3.426 17 O -0.561 6.561 18 C -0.322 4.322 19 S 0.343 5.657 20 C -0.233 4.233 21 C -0.166 4.166 22 C 0.158 3.842 23 N -0.390 5.390 24 C 0.023 3.977 25 C -0.222 4.222 26 C -0.197 4.197 27 C -0.018 4.018 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.370 0.630 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.213 0.787 39 H 0.162 0.838 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 -4.673 16.010 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.084 0.916 4 C 0.014 3.986 5 N -0.384 5.384 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.616 5.616 10 Si 0.802 3.198 11 H -0.219 1.219 12 H -0.225 1.225 13 H -0.188 1.188 14 N -0.322 5.322 15 C -0.085 4.085 16 C 0.363 3.637 17 O -0.441 6.441 18 C -0.443 4.443 19 S 0.612 5.388 20 C -0.371 4.371 21 C -0.196 4.196 22 C 0.050 3.950 23 N -0.063 5.063 24 C -0.105 4.105 25 C -0.246 4.246 26 C -0.221 4.221 27 C -0.144 4.144 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.201 0.799 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.179 0.821 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.283 -5.562 15.273 20.992 hybrid contribution 2.489 1.141 -0.442 2.774 sum -10.794 -4.421 14.831 18.868 Atomic orbital electron populations 1.21976 0.90842 1.03988 1.03149 1.21320 0.96261 0.96250 0.83230 0.91646 1.21235 0.84192 0.98059 0.95108 1.42522 1.01964 1.69853 1.24104 1.19628 0.89885 1.28380 0.99559 0.90239 1.25577 0.97567 1.03144 1.00439 1.69874 1.06723 1.52758 1.32277 0.85156 0.77968 0.78158 0.78549 1.21918 1.22512 1.18824 1.47597 1.49885 1.12950 1.21796 1.22198 1.01350 0.80498 1.04426 1.17182 0.78256 0.85997 0.82246 1.90866 1.58772 1.17550 1.76941 1.24714 1.08972 1.05713 1.04933 1.83067 1.36304 1.07296 1.12084 1.26151 1.03154 1.02026 1.05748 1.19789 1.05311 0.93889 1.00641 1.17506 0.93671 0.86901 0.96945 1.41006 1.42844 1.11784 1.10712 1.21514 1.01466 0.97491 0.90049 1.21052 1.08894 0.96131 0.98536 1.21155 1.06087 1.00431 0.94444 1.22362 1.07218 0.89430 0.95409 0.89962 0.89882 0.92043 0.93940 0.95076 0.79875 0.94425 0.88264 0.88074 0.91392 0.76970 0.82093 0.86293 0.84769 0.81827 0.78936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 2 C 0.13 4.54 2.79 44.99 0.13 4.66 16 3 H 0.07 2.74 6.90 -2.38 -0.02 2.72 16 4 C 0.14 5.54 5.52 86.38 0.48 6.02 16 5 N -0.74 -38.77 5.43 -343.46 -1.87 -40.64 16 6 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 9 N -0.97 -61.51 13.06 21.65 0.28 -61.22 16 10 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 14 N -0.59 -19.82 2.24 -827.94 -1.86 -21.68 16 15 C 0.06 1.44 7.93 127.77 1.01 2.45 16 16 C 0.57 22.76 7.18 86.29 0.62 23.38 16 17 O -0.56 -26.91 12.94 -4.54 -0.06 -26.97 16 18 C -0.32 -10.70 6.19 24.11 0.15 -10.55 16 19 S 0.34 6.87 17.91 -56.49 -1.01 5.85 16 20 C -0.23 -4.11 10.90 66.76 0.73 -3.38 16 21 C -0.17 -3.99 9.97 21.18 0.21 -3.78 16 22 C 0.16 5.26 5.98 37.62 0.22 5.49 16 23 N -0.39 -14.61 2.59 -348.78 -0.90 -15.51 16 24 C 0.02 1.04 8.62 83.17 0.72 1.76 16 25 C -0.22 -8.83 10.86 22.16 0.24 -8.59 16 26 C -0.20 -6.37 10.86 22.16 0.24 -6.13 16 27 C -0.02 -0.56 11.24 83.17 0.94 0.37 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.51 7.67 -2.39 -0.02 1.50 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.51 6.87 -2.39 -0.02 1.49 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.37 21.65 7.07 -92.70 -0.65 20.99 16 34 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.10 1.61 7.75 -2.39 -0.02 1.59 16 36 H 0.10 2.37 6.54 -2.39 -0.02 2.35 16 37 H 0.07 1.73 4.65 -20.42 -0.09 1.63 16 38 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.12 6.35 7.76 -2.91 -0.02 6.33 16 41 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 42 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -81.47 363.83 4.56 -76.91 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: 0.29 Total: 41.84 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 7.65 Total: -7.68 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -4.34 Total: -139.06 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.06 Total: -26.97 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.01 Total: 5.85 kcal Total: -81.47 4.56 -76.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698838310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.413 kcal (2) G-P(sol) polarization free energy of solvation -81.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds