Wall clock time and date at job start Tue Mar 31 2020 18:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47100 * 119.99732 * 2 1 3 5 5 N 1.46500 * 109.47393 * 174.99865 * 4 2 1 6 6 C 1.36931 * 120.00286 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00343 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00413 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46911 * 60.00049 * 10 8 6 12 12 H 1.48498 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47170 * 300.00220 * 10 8 6 14 14 N 1.46498 * 109.47020 * 239.99950 * 2 1 3 15 15 C 1.46504 * 120.00151 * 299.99640 * 14 2 1 16 16 C 1.34778 * 119.99932 * 120.00083 * 14 2 1 17 17 O 1.21759 * 120.00070 * 6.02293 * 16 14 2 18 18 C 1.46113 * 119.99564 * 186.02306 * 16 14 2 19 19 S 1.75811 * 125.48150 * 7.08066 * 18 16 14 20 20 C 1.70575 * 91.67468 * 179.97438 * 19 18 16 21 21 C 1.33576 * 111.17167 * 0.02562 * 20 19 18 22 22 C 1.37359 * 125.47211 * 186.77445 * 18 16 14 23 23 N 1.39882 * 123.48919 * 0.02562 * 22 18 16 24 24 C 1.36606 * 125.67127 * 309.69640 * 23 22 18 25 25 C 1.34843 * 108.19354 * 179.83207 * 24 23 22 26 26 C 1.40963 * 107.47570 * 0.42407 * 25 24 23 27 27 C 1.34844 * 107.47348 * 359.73451 * 26 25 24 28 28 H 1.09002 * 109.47364 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.47135 * 60.00395 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47309 * 295.00025 * 4 2 1 32 32 H 1.09006 * 109.47003 * 55.00018 * 4 2 1 33 33 H 0.97001 * 119.99740 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00785 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46983 * 95.98784 * 15 14 2 36 36 H 1.09002 * 109.47199 * 335.98922 * 15 14 2 37 37 H 1.08993 * 109.47384 * 215.98855 * 15 14 2 38 38 H 1.07997 * 124.41251 * 179.97438 * 20 19 18 39 39 H 1.08003 * 122.45343 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.90138 * 359.95958 * 24 23 22 41 41 H 1.08006 * 126.26029 * 180.19691 * 25 24 23 42 42 H 1.08000 * 126.26163 * 179.71055 * 26 25 24 43 43 H 1.08001 * 125.89931 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1838 -1.4388 2.2068 7 1 3.6467 -1.8446 3.0513 8 6 5.5672 -1.5379 2.1514 9 7 6.2218 -1.0438 1.1220 10 14 6.5000 -2.3727 3.5380 11 1 6.0442 -3.7804 3.6639 12 1 7.9548 -2.3476 3.2412 13 1 6.2426 -1.6532 4.8113 14 7 2.0183 -0.6906 -1.1962 15 6 1.6645 -2.0933 -1.4280 16 6 2.7932 -0.0356 -2.0833 17 8 3.1780 1.0933 -1.8386 18 6 3.1714 -0.6804 -3.3388 19 16 2.5604 -2.2239 -3.9178 20 6 3.5068 -2.1243 -5.3334 21 6 4.2282 -1.0002 -5.3533 22 6 4.0570 -0.1752 -4.2592 23 7 4.7202 1.0464 -4.1023 24 6 4.1310 2.2383 -3.7888 25 6 5.0941 3.1797 -3.7227 26 6 6.3214 2.5508 -4.0148 27 6 6.0641 1.2469 -4.2429 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.9824 -0.4622 0.4320 34 1 7.1886 -1.1127 1.0835 35 1 0.7984 -2.1452 -2.0877 36 1 1.4259 -2.5697 -0.4771 37 1 2.5057 -2.6084 -1.8915 38 1 3.5215 -2.8729 -6.1116 39 1 4.8925 -0.7523 -6.1680 40 1 3.0762 2.3984 -3.6207 41 1 4.9509 4.2251 -3.4921 42 1 7.2905 3.0263 -4.0499 43 1 6.7943 0.4918 -4.4938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698838311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:37 Heat of formation + Delta-G solvation = 88.823493 kcal Electronic energy + Delta-G solvation = -27124.163489 eV Core-core repulsion = 23491.625780 eV Total energy + Delta-G solvation = -3632.537709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21929 -39.63370 -37.62957 -36.23597 -34.05607 -32.21595 -31.62084 -30.17042 -28.96327 -28.26326 -26.94264 -25.65929 -24.72059 -22.75821 -21.90525 -21.02200 -19.98841 -19.51373 -18.77384 -17.97389 -17.13347 -17.04085 -16.13856 -15.42217 -15.31469 -14.76634 -14.56582 -14.19685 -13.80755 -13.63006 -13.35651 -13.27877 -13.13317 -13.01740 -12.85172 -12.51405 -12.34828 -12.28870 -12.15375 -12.01810 -11.86129 -11.63315 -11.50432 -10.82714 -10.76806 -10.72925 -10.50023 -10.06221 -9.66684 -9.62914 -9.23990 -8.84211 -8.80051 -8.40461 -7.88473 -7.65568 -6.87185 -5.68571 -2.99308 0.35845 1.30730 1.76447 2.04685 2.86839 3.11552 3.29072 3.44813 3.45441 3.49837 3.50419 3.51655 4.57310 4.64275 4.88668 5.03908 5.15102 5.21479 5.29274 5.38133 5.49127 5.53848 5.58009 5.62749 5.66835 5.77397 5.78394 5.91054 5.97599 6.00989 6.08706 6.10130 6.16110 6.34350 6.46977 6.65388 6.67700 6.68723 6.92143 7.36824 7.55036 7.62507 7.72085 7.81737 8.41502 8.47590 9.59034 10.17850 10.52961 11.52601 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009649 B = 0.004850 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.195919 B = 5771.954142 C = 6649.534743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.103 0.897 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.245 4.245 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.925 5.925 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.590 5.590 15 C 0.066 3.934 16 C 0.586 3.414 17 O -0.508 6.508 18 C -0.269 4.269 19 S 0.267 5.733 20 C -0.253 4.253 21 C -0.149 4.149 22 C 0.183 3.817 23 N -0.388 5.388 24 C 0.053 3.947 25 C -0.214 4.214 26 C -0.187 4.187 27 C -0.018 4.018 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.388 0.612 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 -1.645 -15.198 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.121 0.879 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.376 4.376 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.572 5.572 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.323 5.323 15 C -0.079 4.079 16 C 0.374 3.626 17 O -0.385 6.385 18 C -0.392 4.392 19 S 0.536 5.464 20 C -0.390 4.390 21 C -0.181 4.181 22 C 0.076 3.924 23 N -0.062 5.062 24 C -0.074 4.074 25 C -0.237 4.237 26 C -0.212 4.212 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.188 0.812 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.036 -2.485 -14.420 18.947 hybrid contribution 2.009 0.364 -0.002 2.042 sum -10.027 -2.121 -14.422 17.693 Atomic orbital electron populations 1.22071 0.94921 1.02148 1.02183 1.21441 0.93222 0.98580 0.84184 0.87922 1.21004 0.87328 0.96630 0.93548 1.42305 0.99555 1.70110 1.25249 1.19129 0.89418 1.29810 0.99252 0.91389 1.24762 0.96472 1.01565 0.97938 1.69691 1.07186 1.50315 1.30040 0.86315 0.79108 0.79176 0.81820 1.21379 1.21728 1.21284 1.47458 1.50547 1.11674 1.22631 1.21867 1.00213 0.82700 1.03132 1.16692 0.78388 0.85691 0.81837 1.90910 1.52693 1.18216 1.76649 1.24603 1.11275 1.02110 1.01186 1.83543 1.40608 1.14279 1.07992 1.25558 1.05067 1.02400 1.06006 1.19689 1.04267 0.95084 0.99044 1.16932 0.94924 0.87469 0.93120 1.40866 1.06451 1.04556 1.54376 1.21716 0.98967 0.82811 1.03909 1.20785 0.92585 0.99111 1.11254 1.20831 0.98337 0.93414 1.08574 1.21754 0.83370 0.98178 1.11084 0.91192 0.92612 0.92344 0.95336 0.96290 0.77792 0.93515 0.92366 0.88530 0.90806 0.81189 0.83700 0.82530 0.84878 0.84800 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 37.16 0.34 -1.54 16 2 C 0.13 2.17 2.79 -67.93 -0.19 1.98 16 3 H 0.10 1.99 6.91 -51.93 -0.36 1.63 16 4 C 0.14 2.88 5.52 -4.04 -0.02 2.86 16 5 N -0.73 -19.07 5.43 -59.91 -0.33 -19.40 16 6 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 9 N -0.92 -29.31 13.06 55.49 0.72 -28.59 16 10 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 N -0.59 -9.83 2.24 -175.68 -0.39 -10.22 16 15 C 0.07 0.87 7.84 59.85 0.47 1.34 16 16 C 0.59 11.00 7.30 -13.10 -0.10 10.91 16 17 O -0.51 -11.11 12.10 5.14 0.06 -11.05 16 18 C -0.27 -4.34 6.18 -36.74 -0.23 -4.56 16 19 S 0.27 2.94 17.87 -107.50 -1.92 1.02 16 20 C -0.25 -2.59 10.90 29.10 0.32 -2.27 16 21 C -0.15 -1.86 9.96 -41.26 -0.41 -2.27 16 22 C 0.18 2.94 6.00 -84.55 -0.51 2.43 16 23 N -0.39 -6.83 2.71 -61.59 -0.17 -7.00 16 24 C 0.05 0.95 8.53 -16.63 -0.14 0.81 16 25 C -0.21 -3.67 10.86 -39.75 -0.43 -4.10 16 26 C -0.19 -3.13 10.86 -39.75 -0.43 -3.56 16 27 C -0.02 -0.30 11.24 -16.63 -0.19 -0.49 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.37 6.87 -51.93 -0.36 0.01 16 33 H 0.39 11.20 7.07 -40.82 -0.29 10.92 16 34 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 35 H 0.06 0.57 7.48 -51.93 -0.39 0.18 16 36 H 0.10 1.28 6.54 -51.93 -0.34 0.94 16 37 H 0.07 1.02 5.14 -27.56 -0.14 0.87 16 38 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.16 2.70 7.20 -52.49 -0.38 2.32 16 41 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 42 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -35.81 362.68 -8.92 -44.73 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.58 Total: 13.15 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.76 Total: -6.06 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.16 Total: -65.21 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.06 Total: -11.05 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.92 Total: 1.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.81 -8.92 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698838311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.557 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds