Wall clock time and date at job start Tue Mar 31 2020 18:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47100 * 119.99732 * 2 1 3 5 5 N 1.46500 * 109.47393 * 174.99865 * 4 2 1 6 6 C 1.36931 * 120.00286 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00343 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00413 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46911 * 60.00049 * 10 8 6 12 12 H 1.48498 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47170 * 300.00220 * 10 8 6 14 14 N 1.46498 * 109.47020 * 239.99950 * 2 1 3 15 15 C 1.46504 * 120.00151 * 299.99640 * 14 2 1 16 16 C 1.34778 * 119.99932 * 120.00083 * 14 2 1 17 17 O 1.21759 * 120.00070 * 6.02293 * 16 14 2 18 18 C 1.46113 * 119.99564 * 186.02306 * 16 14 2 19 19 S 1.75811 * 125.48150 * 7.08066 * 18 16 14 20 20 C 1.70575 * 91.67468 * 179.97438 * 19 18 16 21 21 C 1.33576 * 111.17167 * 0.02562 * 20 19 18 22 22 C 1.37359 * 125.47211 * 186.77445 * 18 16 14 23 23 N 1.39882 * 123.48919 * 0.02562 * 22 18 16 24 24 C 1.36606 * 125.67127 * 309.69640 * 23 22 18 25 25 C 1.34843 * 108.19354 * 179.83207 * 24 23 22 26 26 C 1.40963 * 107.47570 * 0.42407 * 25 24 23 27 27 C 1.34844 * 107.47348 * 359.73451 * 26 25 24 28 28 H 1.09002 * 109.47364 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.47135 * 60.00395 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47309 * 295.00025 * 4 2 1 32 32 H 1.09006 * 109.47003 * 55.00018 * 4 2 1 33 33 H 0.97001 * 119.99740 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00785 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46983 * 95.98784 * 15 14 2 36 36 H 1.09002 * 109.47199 * 335.98922 * 15 14 2 37 37 H 1.08993 * 109.47384 * 215.98855 * 15 14 2 38 38 H 1.07997 * 124.41251 * 179.97438 * 20 19 18 39 39 H 1.08003 * 122.45343 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.90138 * 359.95958 * 24 23 22 41 41 H 1.08006 * 126.26029 * 180.19691 * 25 24 23 42 42 H 1.08000 * 126.26163 * 179.71055 * 26 25 24 43 43 H 1.08001 * 125.89931 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1838 -1.4388 2.2068 7 1 3.6467 -1.8446 3.0513 8 6 5.5672 -1.5379 2.1514 9 7 6.2218 -1.0438 1.1220 10 14 6.5000 -2.3727 3.5380 11 1 6.0442 -3.7804 3.6639 12 1 7.9548 -2.3476 3.2412 13 1 6.2426 -1.6532 4.8113 14 7 2.0183 -0.6906 -1.1962 15 6 1.6645 -2.0933 -1.4280 16 6 2.7932 -0.0356 -2.0833 17 8 3.1780 1.0933 -1.8386 18 6 3.1714 -0.6804 -3.3388 19 16 2.5604 -2.2239 -3.9178 20 6 3.5068 -2.1243 -5.3334 21 6 4.2282 -1.0002 -5.3533 22 6 4.0570 -0.1752 -4.2592 23 7 4.7202 1.0464 -4.1023 24 6 4.1310 2.2383 -3.7888 25 6 5.0941 3.1797 -3.7227 26 6 6.3214 2.5508 -4.0148 27 6 6.0641 1.2469 -4.2429 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.9824 -0.4622 0.4320 34 1 7.1886 -1.1127 1.0835 35 1 0.7984 -2.1452 -2.0877 36 1 1.4259 -2.5697 -0.4771 37 1 2.5057 -2.6084 -1.8915 38 1 3.5215 -2.8729 -6.1116 39 1 4.8925 -0.7523 -6.1680 40 1 3.0762 2.3984 -3.6207 41 1 4.9509 4.2251 -3.4921 42 1 7.2905 3.0263 -4.0499 43 1 6.7943 0.4918 -4.4938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698838311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:36 Heat of formation + Delta-G solvation = 66.449505 kcal Electronic energy + Delta-G solvation = -27125.133698 eV Core-core repulsion = 23491.625780 eV Total energy + Delta-G solvation = -3633.507918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45773 -40.96214 -38.72436 -37.67688 -35.89867 -33.79442 -32.82180 -31.98581 -30.14903 -29.51031 -28.08738 -27.41032 -25.85838 -24.52934 -23.25551 -22.22154 -21.25692 -20.85644 -19.99779 -19.22701 -19.09275 -18.34124 -17.29403 -16.91903 -16.61337 -16.38817 -15.69314 -15.49862 -15.30024 -15.16133 -15.02462 -14.56888 -14.26487 -14.20261 -14.08559 -13.81330 -13.73581 -13.57924 -13.35035 -13.30142 -13.07553 -13.00102 -12.91021 -12.76780 -12.54771 -12.20018 -11.84611 -11.76388 -11.67489 -11.04269 -10.92738 -10.36184 -9.81326 -9.68949 -9.01423 -9.00838 -8.98518 -7.93553 -5.24671 -0.71338 0.30320 0.84320 0.99902 1.42677 1.47046 1.53226 1.60070 1.86915 2.07601 2.16913 2.22065 2.53908 3.38325 3.46430 3.84785 3.95563 4.02170 4.04865 4.09129 4.25499 4.31424 4.36483 4.41350 4.52872 4.54235 4.67347 4.69486 4.78469 4.82823 4.88478 4.94413 4.96437 5.02922 5.12283 5.29386 5.35207 5.38413 5.45704 5.59723 6.06895 6.23751 6.26468 6.34457 6.56877 7.09713 7.30872 8.08423 8.30957 9.28573 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009649 B = 0.004850 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.195919 B = 5771.954142 C = 6649.534743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.133 3.867 3 H 0.067 0.933 4 C 0.140 3.860 5 N -0.743 5.743 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.078 4.078 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.271 1.271 12 H -0.300 1.300 13 H -0.279 1.279 14 N -0.591 5.591 15 C 0.059 3.941 16 C 0.574 3.426 17 O -0.558 6.558 18 C -0.321 4.321 19 S 0.343 5.657 20 C -0.230 4.230 21 C -0.167 4.167 22 C 0.159 3.841 23 N -0.394 5.394 24 C 0.038 3.962 25 C -0.230 4.230 26 C -0.201 4.201 27 C -0.033 4.033 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.370 0.630 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.214 0.786 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 -4.541 -15.772 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.085 0.915 4 C 0.013 3.987 5 N -0.385 5.385 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.619 5.619 10 Si 0.804 3.196 11 H -0.197 1.197 12 H -0.226 1.226 13 H -0.205 1.205 14 N -0.323 5.323 15 C -0.085 4.085 16 C 0.363 3.637 17 O -0.439 6.439 18 C -0.443 4.443 19 S 0.612 5.388 20 C -0.368 4.368 21 C -0.198 4.198 22 C 0.051 3.949 23 N -0.068 5.068 24 C -0.090 4.090 25 C -0.254 4.254 26 C -0.225 4.225 27 C -0.159 4.159 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.202 0.798 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.899 -5.438 -14.966 21.136 hybrid contribution 2.441 1.190 0.177 2.722 sum -11.458 -4.248 -14.789 19.184 Atomic orbital electron populations 1.21979 0.90687 1.03991 1.03264 1.21318 0.96222 0.96260 0.83201 0.91511 1.21246 0.84120 0.98024 0.95287 1.42544 1.02050 1.69784 1.24142 1.19618 0.89918 1.28422 0.99681 0.90184 1.25640 0.97637 1.03164 1.00563 1.69906 1.06743 1.52744 1.32517 0.85193 0.76938 0.78745 0.78748 1.19694 1.22649 1.20516 1.47574 1.49944 1.12901 1.21873 1.22139 1.01527 0.80556 1.04292 1.17199 0.78032 0.85483 0.83000 1.90864 1.54617 1.20420 1.77976 1.24667 1.13219 1.05492 1.00894 1.83064 1.38796 1.09989 1.06901 1.26100 1.02638 1.01852 1.06161 1.19794 1.05783 0.95501 0.98689 1.17502 0.95388 0.87434 0.94565 1.41046 1.06703 1.05158 1.53916 1.21772 0.99001 0.83630 1.04591 1.21100 0.92939 0.99885 1.11474 1.21167 0.99020 0.93674 1.08673 1.22196 0.83762 0.98875 1.11049 0.90003 0.91714 0.89997 0.95192 0.94060 0.79834 0.94443 0.88250 0.88259 0.91389 0.76940 0.82255 0.83107 0.83653 0.82853 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 2 C 0.13 4.50 2.79 44.99 0.13 4.63 16 3 H 0.07 2.74 6.91 -2.39 -0.02 2.72 16 4 C 0.14 5.56 5.52 86.38 0.48 6.04 16 5 N -0.74 -39.57 5.43 -343.46 -1.87 -41.44 16 6 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 8 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 9 N -0.97 -63.31 13.06 21.65 0.28 -63.03 16 10 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 N -0.59 -19.60 2.24 -827.92 -1.86 -21.45 16 15 C 0.06 1.42 7.84 127.77 1.00 2.42 16 16 C 0.57 22.34 7.30 86.29 0.63 22.97 16 17 O -0.56 -26.28 12.10 -4.54 -0.05 -26.33 16 18 C -0.32 -10.38 6.18 24.11 0.15 -10.23 16 19 S 0.34 6.57 17.87 -56.49 -1.01 5.56 16 20 C -0.23 -3.88 10.90 66.76 0.73 -3.15 16 21 C -0.17 -3.92 9.96 21.18 0.21 -3.71 16 22 C 0.16 5.19 6.00 37.62 0.23 5.41 16 23 N -0.39 -14.57 2.71 -348.77 -0.94 -15.52 16 24 C 0.04 1.47 8.53 83.17 0.71 2.18 16 25 C -0.23 -8.42 10.86 22.16 0.24 -8.18 16 26 C -0.20 -7.01 10.86 22.16 0.24 -6.77 16 27 C -0.03 -1.15 11.24 83.17 0.93 -0.21 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.48 6.87 -2.38 -0.02 1.47 16 33 H 0.37 22.26 7.07 -92.71 -0.66 21.61 16 34 H 0.25 15.79 8.31 -92.71 -0.77 15.01 16 35 H 0.10 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.10 2.35 6.54 -2.39 -0.02 2.33 16 37 H 0.07 1.73 5.14 -17.89 -0.09 1.64 16 38 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.15 5.75 7.20 -2.91 -0.02 5.73 16 41 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.18 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -82.81 362.68 4.52 -78.29 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: 0.30 Total: 42.75 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 7.64 Total: -8.47 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -4.39 Total: -141.43 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.01 Total: 5.56 kcal Total: -82.81 4.52 -78.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698838311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.742 kcal (2) G-P(sol) polarization free energy of solvation -82.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds