Wall clock time and date at job start Tue Mar 31 2020 17:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47556 * 2 1 4 4 C 1.53001 * 109.47178 * 119.99984 * 2 1 3 5 5 H 1.09002 * 109.47151 * 59.99768 * 4 2 1 6 6 C 1.52998 * 109.47209 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47319 * 174.99889 * 6 4 2 8 8 C 1.34773 * 120.00198 * 180.02562 * 7 6 4 9 9 O 1.21623 * 120.00276 * 0.02562 * 8 7 6 10 10 C 1.47205 * 120.00119 * 180.02562 * 8 7 6 11 11 C 1.33784 * 124.64921 * 179.97438 * 10 8 7 12 12 C 1.40098 * 115.50105 * 179.72875 * 11 10 8 13 13 C 1.41721 * 129.98743 * 179.54741 * 12 11 10 14 14 C 1.36039 * 119.33678 * 180.41050 * 13 12 11 15 15 N 1.32317 * 121.57995 * 0.30278 * 14 13 12 16 16 C 1.31358 * 122.05318 * 359.97223 * 15 14 13 17 17 C 1.39728 * 120.59942 * 0.02562 * 16 15 14 18 18 S 1.75532 * 124.64712 * 359.97310 * 10 8 7 19 19 N 1.46494 * 109.47195 * 299.99901 * 4 2 1 20 20 C 1.36933 * 120.00296 * 84.99861 * 19 4 2 21 21 H 1.08003 * 119.99753 * 359.97438 * 20 19 4 22 22 C 1.38812 * 120.00424 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99765 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47094 * 90.00047 * 24 22 20 26 26 H 1.48494 * 109.47435 * 209.99981 * 24 22 20 27 27 H 1.48498 * 109.47169 * 330.00291 * 24 22 20 28 28 H 1.08998 * 109.47123 * 299.99873 * 1 2 3 29 29 H 1.08997 * 109.46780 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47312 * 239.99414 * 2 1 3 32 32 H 1.08996 * 109.47799 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46959 * 299.99874 * 3 2 1 34 34 H 1.08997 * 109.47664 * 59.99626 * 3 2 1 35 35 H 1.09006 * 109.47378 * 55.00431 * 6 4 2 36 36 H 1.09001 * 109.47525 * 294.99959 * 6 4 2 37 37 H 0.96998 * 120.00163 * 0.02562 * 7 6 4 38 38 H 1.08000 * 122.25167 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.33442 * 0.69158 * 13 12 11 40 40 H 1.08002 * 119.21330 * 180.27290 * 14 13 12 41 41 H 1.08003 * 119.69635 * 179.97438 * 16 15 14 42 42 H 0.96996 * 120.00176 * 264.99906 * 19 4 2 43 43 H 0.97000 * 119.99413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.3055 2.5007 8 6 5.3834 -1.4096 2.7239 9 8 6.1738 -1.0185 1.8863 10 6 5.8742 -1.9966 3.9815 11 6 7.1654 -2.1450 4.2986 12 6 7.4165 -2.7225 5.5501 13 6 8.6480 -3.0257 6.1826 14 6 8.6402 -3.6012 7.4152 15 7 7.5091 -3.8911 8.0375 16 6 6.3355 -3.6404 7.5033 17 6 6.2403 -3.0506 6.2402 18 16 4.8455 -2.5976 5.2705 19 7 1.5517 -0.0307 2.4454 20 6 0.3102 -0.3210 2.9448 21 1 -0.3092 -1.0588 2.4566 22 6 -0.1527 0.3337 4.0779 23 7 0.6016 1.2341 4.6720 24 14 -1.8466 -0.0618 4.7587 25 1 -1.7381 -1.1669 5.7448 26 1 -2.4063 1.1420 5.4240 27 1 -2.7421 -0.4753 3.6486 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.9337 0.3018 1.1592 36 1 3.9330 -1.3115 0.4071 37 1 3.4282 -1.6171 3.1690 38 1 7.9607 -1.8360 3.6366 39 1 9.5833 -2.7980 5.6929 40 1 9.5799 -3.8274 7.8973 41 1 5.4360 -3.8933 8.0450 42 1 2.1078 0.6323 2.8836 43 1 0.2779 1.6918 5.4636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698963808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:26 Heat of formation + Delta-G solvation = 24.412220 kcal Electronic energy + Delta-G solvation = -25666.867375 eV Core-core repulsion = 22031.536584 eV Total energy + Delta-G solvation = -3635.330791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.63253 -39.58424 -37.47211 -36.14300 -34.05551 -32.96193 -31.68248 -30.85698 -30.15020 -28.18384 -26.39366 -25.28263 -24.27676 -23.62026 -22.43268 -21.30737 -20.31290 -19.09892 -18.41298 -17.36580 -16.92228 -16.64170 -16.24509 -15.50273 -15.43128 -14.85207 -14.67948 -14.44257 -14.30623 -14.09153 -14.01867 -13.45958 -13.32559 -13.14928 -12.97354 -12.34317 -12.26146 -12.00673 -11.88940 -11.36735 -11.08393 -11.00341 -10.96551 -10.84616 -10.62505 -10.30551 -10.18024 -10.16800 -10.07875 -9.94445 -9.88565 -9.52343 -9.28387 -8.97604 -8.78427 -8.06341 -7.08179 -5.85985 -3.15478 0.01307 0.76487 1.16173 1.63481 1.80538 3.14623 3.23893 3.36599 3.43170 3.44649 3.52292 4.19183 4.35432 4.49635 4.52217 4.65770 4.87181 5.14781 5.26764 5.29087 5.36511 5.38160 5.45930 5.55773 5.68376 5.76021 5.81046 5.83989 5.95300 6.03463 6.16193 6.29531 6.29708 6.35100 6.48017 6.56627 6.62820 6.74644 6.80783 7.00928 7.30397 7.62828 7.64958 7.65558 8.24273 8.30948 9.43241 9.96582 10.32825 11.35520 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003450 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.492060 B = 8113.463999 C = 9939.741575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.110 3.890 7 N -0.701 5.701 8 C 0.580 3.420 9 O -0.535 6.535 10 C -0.197 4.197 11 C -0.065 4.065 12 C -0.044 4.044 13 C -0.122 4.122 14 C 0.074 3.926 15 N -0.470 5.470 16 C 0.162 3.838 17 C -0.206 4.206 18 S 0.190 5.810 19 N -0.718 5.718 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.927 5.927 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.410 0.590 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.310 -8.512 -0.120 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.056 3.944 5 H 0.072 0.928 6 C -0.014 4.014 7 N -0.352 5.352 8 C 0.364 3.636 9 O -0.414 6.414 10 C -0.318 4.318 11 C -0.098 4.098 12 C -0.060 4.060 13 C -0.144 4.144 14 C -0.075 4.075 15 N -0.180 5.180 16 C -0.009 4.009 17 C -0.325 4.325 18 S 0.456 5.544 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.247 0.753 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.182 0.818 42 H 0.220 0.780 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.177 -8.737 0.296 14.190 hybrid contribution 0.344 0.505 -0.174 0.635 sum 11.521 -8.232 0.122 14.160 Atomic orbital electron populations 1.21833 0.94906 1.00879 1.02144 1.21609 0.96885 0.96566 0.97791 1.21801 0.99653 0.96766 1.01746 1.20559 0.88991 0.96136 0.88699 0.92767 1.21887 0.96087 0.98733 0.84644 1.45901 1.05828 1.61670 1.21790 1.17059 0.83039 0.78951 0.84508 1.90793 1.55569 1.49659 1.45378 1.24153 0.98030 1.08985 1.00610 1.20089 0.96383 0.98133 0.95178 1.18342 0.93580 0.99780 0.94267 1.21766 0.96969 0.99305 0.96329 1.22133 0.96686 0.96379 0.92305 1.67711 0.98163 1.17019 1.35071 1.22367 0.96417 0.92750 0.89382 1.24258 0.98502 1.07882 1.01848 1.84716 1.03744 1.58756 1.07136 1.42432 1.18125 1.47482 1.28018 1.19179 0.92777 1.18193 1.06824 0.90913 1.24706 0.98197 0.99095 0.98446 1.69657 1.36847 1.28795 1.22204 0.86293 0.84351 0.77195 0.78956 1.21730 1.21891 1.20766 0.89316 0.94973 0.94121 0.93200 0.93674 0.94236 0.91201 0.90810 0.91452 0.75346 0.82434 0.84128 0.82373 0.81819 0.78039 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.26 37.16 0.31 -2.13 16 2 C -0.11 -1.74 2.80 -90.62 -0.25 -2.00 16 3 C -0.14 -2.33 8.69 37.15 0.32 -2.01 16 4 C 0.17 2.92 2.34 -67.93 -0.16 2.76 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.79 5.02 -4.04 -0.02 1.77 16 7 N -0.70 -11.51 5.38 -61.45 -0.33 -11.84 16 8 C 0.58 9.63 7.80 -12.62 -0.10 9.53 16 9 O -0.53 -10.05 16.73 5.26 0.09 -9.96 16 10 C -0.20 -2.84 6.33 -37.50 -0.24 -3.08 16 11 C -0.07 -0.84 9.81 -40.45 -0.40 -1.23 16 12 C -0.04 -0.52 5.91 -107.11 -0.63 -1.16 16 13 C -0.12 -1.17 10.13 -39.04 -0.40 -1.56 16 14 C 0.07 0.71 11.06 -18.13 -0.20 0.51 16 15 N -0.47 -5.43 10.34 -13.41 -0.14 -5.57 16 16 C 0.16 1.83 11.24 -17.20 -0.19 1.64 16 17 C -0.21 -2.54 6.54 -38.26 -0.25 -2.79 16 18 S 0.19 2.50 22.26 -107.50 -2.39 0.11 16 19 N -0.72 -15.43 3.68 -53.43 -0.20 -15.62 16 20 C -0.24 -5.77 7.57 -15.06 -0.11 -5.88 16 21 H 0.07 1.73 7.39 -52.48 -0.39 1.34 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -25.73 13.06 55.49 0.72 -25.01 16 24 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.09 1.83 6.01 -51.93 -0.31 1.51 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.69 6.32 -51.93 -0.33 0.36 16 33 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 35 H 0.07 1.26 6.18 -51.93 -0.32 0.94 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 6.86 7.19 -40.82 -0.29 6.56 16 38 H 0.16 1.85 7.96 -52.49 -0.42 1.43 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.39 9.14 7.80 -40.82 -0.32 8.83 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -28.80 369.04 -9.84 -38.63 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.71 Total: 13.74 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.42 Total: -5.92 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.06 Total: -58.03 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.39 Total: 0.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.80 -9.84 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.047 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds