Wall clock time and date at job start Tue Mar 31 2020 17:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47556 * 2 1 4 4 C 1.53001 * 109.47178 * 119.99984 * 2 1 3 5 5 H 1.09002 * 109.47151 * 59.99768 * 4 2 1 6 6 C 1.52998 * 109.47209 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47319 * 174.99889 * 6 4 2 8 8 C 1.34773 * 120.00198 * 180.02562 * 7 6 4 9 9 O 1.21623 * 120.00276 * 0.02562 * 8 7 6 10 10 C 1.47205 * 120.00119 * 180.02562 * 8 7 6 11 11 C 1.33784 * 124.64921 * 179.97438 * 10 8 7 12 12 C 1.40098 * 115.50105 * 179.72875 * 11 10 8 13 13 C 1.41721 * 129.98743 * 179.54741 * 12 11 10 14 14 C 1.36039 * 119.33678 * 180.41050 * 13 12 11 15 15 N 1.32317 * 121.57995 * 0.30278 * 14 13 12 16 16 C 1.31358 * 122.05318 * 359.97223 * 15 14 13 17 17 C 1.39728 * 120.59942 * 0.02562 * 16 15 14 18 18 S 1.75532 * 124.64712 * 359.97310 * 10 8 7 19 19 N 1.46494 * 109.47195 * 299.99901 * 4 2 1 20 20 C 1.36933 * 120.00296 * 84.99861 * 19 4 2 21 21 H 1.08003 * 119.99753 * 359.97438 * 20 19 4 22 22 C 1.38812 * 120.00424 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99765 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47094 * 90.00047 * 24 22 20 26 26 H 1.48494 * 109.47435 * 209.99981 * 24 22 20 27 27 H 1.48498 * 109.47169 * 330.00291 * 24 22 20 28 28 H 1.08998 * 109.47123 * 299.99873 * 1 2 3 29 29 H 1.08997 * 109.46780 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47312 * 239.99414 * 2 1 3 32 32 H 1.08996 * 109.47799 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46959 * 299.99874 * 3 2 1 34 34 H 1.08997 * 109.47664 * 59.99626 * 3 2 1 35 35 H 1.09006 * 109.47378 * 55.00431 * 6 4 2 36 36 H 1.09001 * 109.47525 * 294.99959 * 6 4 2 37 37 H 0.96998 * 120.00163 * 0.02562 * 7 6 4 38 38 H 1.08000 * 122.25167 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.33442 * 0.69158 * 13 12 11 40 40 H 1.08002 * 119.21330 * 180.27290 * 14 13 12 41 41 H 1.08003 * 119.69635 * 179.97438 * 16 15 14 42 42 H 0.96996 * 120.00176 * 264.99906 * 19 4 2 43 43 H 0.97000 * 119.99413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.3055 2.5007 8 6 5.3834 -1.4096 2.7239 9 8 6.1738 -1.0185 1.8863 10 6 5.8742 -1.9966 3.9815 11 6 7.1654 -2.1450 4.2986 12 6 7.4165 -2.7225 5.5501 13 6 8.6480 -3.0257 6.1826 14 6 8.6402 -3.6012 7.4152 15 7 7.5091 -3.8911 8.0375 16 6 6.3355 -3.6404 7.5033 17 6 6.2403 -3.0506 6.2402 18 16 4.8455 -2.5976 5.2705 19 7 1.5517 -0.0307 2.4454 20 6 0.3102 -0.3210 2.9448 21 1 -0.3092 -1.0588 2.4566 22 6 -0.1527 0.3337 4.0779 23 7 0.6016 1.2341 4.6720 24 14 -1.8466 -0.0618 4.7587 25 1 -1.7381 -1.1669 5.7448 26 1 -2.4063 1.1420 5.4240 27 1 -2.7421 -0.4753 3.6486 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.9337 0.3018 1.1592 36 1 3.9330 -1.3115 0.4071 37 1 3.4282 -1.6171 3.1690 38 1 7.9607 -1.8360 3.6366 39 1 9.5833 -2.7980 5.6929 40 1 9.5799 -3.8274 7.8973 41 1 5.4360 -3.8933 8.0450 42 1 2.1078 0.6323 2.8836 43 1 0.2779 1.6918 5.4636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698963808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:25 Heat of formation + Delta-G solvation = 7.122079 kcal Electronic energy + Delta-G solvation = -25667.617132 eV Core-core repulsion = 22031.536584 eV Total energy + Delta-G solvation = -3636.080548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53867 -40.84650 -38.91411 -37.13520 -35.43855 -34.72974 -32.49398 -32.11390 -31.60927 -29.62360 -27.76734 -26.47328 -25.45716 -24.98892 -23.72629 -22.44392 -21.47181 -20.37613 -19.67002 -19.11028 -17.96649 -17.65956 -17.30334 -16.85442 -16.63614 -16.27338 -15.91828 -15.62702 -15.43013 -15.36734 -15.09253 -14.88608 -14.71260 -14.54734 -14.04590 -13.85579 -13.49035 -13.12065 -12.89819 -12.88477 -12.81430 -12.65051 -12.44230 -12.16348 -11.98241 -11.94078 -11.86886 -11.44545 -11.30124 -11.16551 -11.02941 -10.81652 -10.76543 -10.36228 -10.04270 -9.00235 -8.92749 -7.84345 -5.10587 -0.97082 -0.05292 0.16868 0.65361 0.81260 1.50918 1.53225 1.59055 1.91975 2.01755 2.61892 2.68562 3.35962 3.47060 3.51562 3.59536 3.80868 3.83088 3.89292 3.92980 4.27481 4.31590 4.34413 4.41821 4.47071 4.57301 4.64367 4.69178 4.73554 4.94755 4.96447 4.97778 5.06755 5.10467 5.21039 5.26497 5.31945 5.45291 5.53362 5.60639 5.65614 5.84431 6.32996 6.35387 6.83512 6.93727 7.44236 8.14960 8.40260 9.38238 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003450 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.492060 B = 8113.463999 C = 9939.741575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.168 3.832 5 H 0.058 0.942 6 C 0.117 3.883 7 N -0.703 5.703 8 C 0.582 3.418 9 O -0.562 6.562 10 C -0.224 4.224 11 C -0.048 4.048 12 C -0.061 4.061 13 C -0.111 4.111 14 C 0.072 3.928 15 N -0.482 5.482 16 C 0.151 3.849 17 C -0.209 4.209 18 S 0.170 5.830 19 N -0.722 5.722 20 C -0.213 4.213 21 H 0.079 0.921 22 C -0.067 4.067 23 N -0.965 5.965 24 Si 0.953 3.047 25 H -0.291 1.291 26 H -0.306 1.306 27 H -0.273 1.273 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.373 0.627 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.797 -9.938 -0.829 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.193 4.193 4 C 0.059 3.941 5 H 0.076 0.924 6 C -0.007 4.007 7 N -0.353 5.353 8 C 0.368 3.632 9 O -0.443 6.443 10 C -0.345 4.345 11 C -0.081 4.081 12 C -0.077 4.077 13 C -0.133 4.133 14 C -0.077 4.077 15 N -0.191 5.191 16 C -0.020 4.020 17 C -0.328 4.328 18 S 0.436 5.564 19 N -0.362 5.362 20 C -0.345 4.345 21 H 0.097 0.903 22 C -0.259 4.259 23 N -0.616 5.616 24 Si 0.784 3.216 25 H -0.218 1.218 26 H -0.234 1.234 27 H -0.198 1.198 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.211 0.789 41 H 0.197 0.803 42 H 0.205 0.795 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.643 -10.204 -0.457 16.253 hybrid contribution 0.031 0.872 0.020 0.872 sum 12.674 -9.332 -0.436 15.745 Atomic orbital electron populations 1.21751 0.95493 1.00896 1.01231 1.21573 0.96282 0.96593 0.98043 1.21723 1.00177 0.96590 1.00850 1.20713 0.89855 0.95825 0.87754 0.92439 1.21824 0.94920 0.98636 0.85326 1.45914 1.05972 1.61603 1.21781 1.17285 0.82685 0.78350 0.84920 1.90763 1.55997 1.51046 1.46507 1.23948 0.98864 1.11227 1.00423 1.20295 0.96011 0.96352 0.95415 1.18565 0.94617 1.00397 0.94092 1.22158 0.97251 0.97738 0.96111 1.22763 0.97341 0.95267 0.92310 1.67780 0.98730 1.17095 1.35542 1.22649 0.97239 0.92868 0.89197 1.24343 0.98048 1.08198 1.02248 1.84681 1.04618 1.59559 1.07533 1.42503 1.17192 1.47347 1.29199 1.19440 0.93229 1.16310 1.05488 0.90344 1.25267 1.00879 1.00108 0.99685 1.69796 1.38235 1.30752 1.22796 0.85443 0.81625 0.76159 0.78369 1.21825 1.23392 1.19765 0.93015 0.93074 0.93576 0.90085 0.92798 0.92498 0.94646 0.91728 0.89603 0.75606 0.81371 0.80778 0.78912 0.80342 0.79486 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.26 71.98 0.59 -3.90 16 2 C -0.10 -3.18 2.80 -10.80 -0.03 -3.21 16 3 C -0.14 -4.29 8.69 71.98 0.63 -3.67 16 4 C 0.17 5.71 2.34 44.99 0.11 5.81 16 5 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 6 C 0.12 3.70 5.02 86.38 0.43 4.13 16 7 N -0.70 -23.18 5.38 -466.59 -2.51 -25.69 16 8 C 0.58 19.40 7.80 86.60 0.68 20.08 16 9 O -0.56 -21.02 16.73 -4.10 -0.07 -21.09 16 10 C -0.22 -6.49 6.33 23.62 0.15 -6.34 16 11 C -0.05 -1.18 9.81 21.71 0.21 -0.97 16 12 C -0.06 -1.37 5.91 -21.48 -0.13 -1.50 16 13 C -0.11 -1.78 10.13 22.62 0.23 -1.55 16 14 C 0.07 1.16 11.06 84.11 0.93 2.09 16 15 N -0.48 -10.13 10.34 -196.33 -2.03 -12.16 16 16 C 0.15 3.25 11.24 85.12 0.96 4.21 16 17 C -0.21 -5.03 6.54 23.12 0.15 -4.88 16 18 S 0.17 4.56 22.26 -56.49 -1.26 3.30 16 19 N -0.72 -31.30 3.68 -322.95 -1.19 -32.49 16 20 C -0.21 -10.33 7.57 84.03 0.64 -9.70 16 21 H 0.08 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 23 N -0.96 -55.29 13.06 21.65 0.28 -55.00 16 24 Si 0.95 43.71 29.55 68.60 2.03 45.74 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.59 6.32 -2.39 -0.02 1.57 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.03 1.35 7.60 -2.39 -0.02 1.33 16 35 H 0.06 2.19 6.18 -2.38 -0.01 2.17 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.41 13.89 7.19 -92.71 -0.67 13.23 16 38 H 0.17 3.70 7.96 -2.91 -0.02 3.68 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.18 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.37 18.19 7.80 -92.71 -0.72 17.47 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -62.91 369.04 0.93 -61.98 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.33 Total: 37.87 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.01 Total: -2.46 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.45 Total: -125.34 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.07 Total: -21.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.26 Total: 3.30 kcal Total: -62.91 0.93 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds