Wall clock time and date at job start Tue Mar 31 2020 17:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21625 * 120.00357 * 0.02562 * 8 7 6 10 10 C 1.47202 * 120.00047 * 180.02562 * 8 7 6 11 11 C 1.33789 * 124.64912 * 179.72427 * 10 8 7 12 12 C 1.40100 * 115.49852 * 179.79178 * 11 10 8 13 13 C 1.41714 * 129.98932 * 180.19374 * 12 11 10 14 14 C 1.36042 * 119.33595 * 180.32482 * 13 12 11 15 15 N 1.32306 * 121.58241 * 359.97438 * 14 13 12 16 16 C 1.31366 * 122.05165 * 0.02562 * 15 14 13 17 17 C 1.39728 * 120.59927 * 359.97438 * 16 15 14 18 18 S 1.75532 * 124.64613 * 0.02562 * 10 8 7 19 19 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 29 29 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 32 32 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 34 34 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 36 36 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 37 37 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 38 38 H 1.08002 * 122.25221 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.33423 * 0.30125 * 13 12 11 40 40 H 1.08004 * 119.20654 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.69451 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1738 -1.1247 1.8251 10 6 5.8741 -2.4518 3.7185 11 6 7.1653 -2.6571 4.0024 12 6 7.4163 -3.4435 5.1344 13 6 8.6477 -3.8456 5.7091 14 6 8.6399 -4.6268 6.8228 15 7 7.5088 -5.0213 7.3846 16 6 6.3352 -4.6830 6.9009 17 6 6.2401 -3.8825 5.7597 18 16 4.8453 -3.2687 4.8828 19 7 1.5517 -2.1025 1.2491 20 6 0.3102 -2.3897 1.7504 21 1 -0.3092 -1.5980 2.1454 22 6 -0.1524 -3.6985 1.7509 23 7 0.6002 -4.6626 1.2645 24 14 -1.8463 -4.0903 2.4340 25 1 -1.7368 -4.3972 3.8828 26 1 -2.7402 -2.9201 2.2420 27 1 -2.4084 -5.2649 1.7203 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9331 -1.1563 0.3175 36 1 3.9337 0.3018 1.3383 37 1 3.4281 -1.9369 2.9842 38 1 7.9607 -2.2420 3.4012 39 1 9.5830 -3.5353 5.2672 40 1 9.5795 -4.9324 7.2589 41 1 5.4357 -5.0261 7.3904 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698963820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:33 Heat of formation + Delta-G solvation = 22.864880 kcal Electronic energy + Delta-G solvation = -25606.847067 eV Core-core repulsion = 21971.449178 eV Total energy + Delta-G solvation = -3635.397889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.67278 -39.65967 -37.52052 -36.18942 -34.13979 -33.49557 -31.71599 -30.92988 -30.19904 -28.15410 -26.23753 -25.23179 -24.28657 -23.52415 -22.37231 -21.33373 -20.41960 -19.52584 -18.65173 -17.51606 -17.02282 -16.71424 -16.29250 -15.62855 -15.40989 -14.87109 -14.75264 -14.56449 -14.35568 -14.11259 -13.89526 -13.71222 -13.56472 -13.30937 -13.03821 -12.43294 -12.18412 -12.04522 -11.99768 -11.71218 -11.30139 -11.06832 -10.97856 -10.83600 -10.49945 -10.21663 -10.20549 -10.15955 -10.07354 -9.96670 -9.93519 -9.33828 -9.26823 -8.98774 -8.87629 -8.10812 -7.16154 -6.17441 -3.20100 -0.03422 0.73184 1.11308 1.58507 1.75808 3.07747 3.15429 3.46423 3.48755 3.49739 3.64058 4.16204 4.31427 4.46875 4.57900 4.62209 4.80868 5.10707 5.17239 5.22168 5.24359 5.33562 5.42486 5.50721 5.52273 5.65665 5.71618 5.78182 5.85306 5.91355 6.02305 6.10599 6.23395 6.26396 6.30548 6.38473 6.49254 6.49689 6.71006 6.93773 7.21900 7.55894 7.62385 7.73410 8.15756 8.65911 9.09544 9.96555 10.10901 11.29233 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.003477 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.632059 B = 8051.478028 C =10026.176839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.111 3.889 7 N -0.704 5.704 8 C 0.581 3.419 9 O -0.534 6.534 10 C -0.199 4.199 11 C -0.063 4.063 12 C -0.044 4.044 13 C -0.122 4.122 14 C 0.075 3.925 15 N -0.469 5.469 16 C 0.162 3.838 17 C -0.205 4.205 18 S 0.187 5.813 19 N -0.733 5.733 20 C -0.330 4.330 21 H 0.068 0.932 22 C -0.040 4.040 23 N -0.940 5.940 24 Si 1.077 2.923 25 H -0.295 1.295 26 H -0.294 1.294 27 H -0.289 1.289 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.367 0.633 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.206 5.323 7.814 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.365 3.635 9 O -0.412 6.412 10 C -0.320 4.320 11 C -0.096 4.096 12 C -0.060 4.060 13 C -0.143 4.143 14 C -0.074 4.074 15 N -0.179 5.179 16 C -0.009 4.009 17 C -0.323 4.323 18 S 0.454 5.546 19 N -0.376 5.376 20 C -0.461 4.461 21 H 0.086 0.914 22 C -0.238 4.238 23 N -0.584 5.584 24 Si 0.908 3.092 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.215 1.215 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.993 4.016 8.528 13.737 hybrid contribution 2.384 1.516 -1.176 3.060 sum 12.377 5.533 7.351 15.422 Atomic orbital electron populations 1.21809 0.94664 1.04027 0.99042 1.21711 0.97165 0.94447 0.99689 1.21946 1.00436 0.97251 1.01113 1.20500 0.88784 0.87897 0.96393 0.92599 1.21885 0.96100 0.94992 0.88302 1.45918 1.05887 1.52518 1.31134 1.17075 0.82979 0.80211 0.83253 1.90796 1.55527 1.48602 1.46318 1.24133 0.98078 1.07106 1.02721 1.20098 0.96350 0.97313 0.95801 1.18339 0.93607 0.98568 0.95511 1.21769 0.96954 0.98641 0.96974 1.22144 0.96712 0.95302 0.93274 1.67717 0.98152 1.21067 1.30921 1.22381 0.96452 0.91844 0.90206 1.24246 0.98403 1.06546 1.03153 1.84717 1.03833 1.46911 1.19138 1.42488 1.18434 1.01934 1.74740 1.20004 0.93617 0.95268 1.37194 0.91368 1.25686 1.05620 0.91461 1.01071 1.70861 1.11392 1.33319 1.42860 0.83271 0.74648 0.75368 0.75917 1.22301 1.22117 1.21473 0.94010 0.94946 0.89423 0.92004 0.93068 0.93396 0.93090 0.91470 0.90933 0.75415 0.82408 0.84093 0.82316 0.81759 0.79898 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.26 37.16 0.31 -2.14 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.15 -2.03 8.84 37.15 0.33 -1.70 16 4 C 0.17 3.11 2.18 -67.93 -0.15 2.97 16 5 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 6 C 0.11 1.81 4.73 -4.04 -0.02 1.80 16 7 N -0.70 -11.56 5.38 -61.45 -0.33 -11.89 16 8 C 0.58 9.60 7.80 -12.62 -0.10 9.51 16 9 O -0.53 -9.98 16.73 5.26 0.09 -9.89 16 10 C -0.20 -2.87 6.33 -37.50 -0.24 -3.11 16 11 C -0.06 -0.80 9.81 -40.44 -0.40 -1.20 16 12 C -0.04 -0.53 5.91 -107.11 -0.63 -1.16 16 13 C -0.12 -1.15 10.13 -39.04 -0.40 -1.55 16 14 C 0.07 0.71 11.06 -18.14 -0.20 0.51 16 15 N -0.47 -5.38 10.34 -13.41 -0.14 -5.52 16 16 C 0.16 1.83 11.24 -17.19 -0.19 1.63 16 17 C -0.20 -2.52 6.54 -38.27 -0.25 -2.77 16 18 S 0.19 2.47 22.26 -107.50 -2.39 0.08 16 19 N -0.73 -16.05 4.44 -53.43 -0.24 -16.28 16 20 C -0.33 -8.17 7.57 -15.06 -0.11 -8.28 16 21 H 0.07 1.68 7.39 -52.48 -0.39 1.30 16 22 C -0.04 -1.06 5.50 -17.43 -0.10 -1.16 16 23 N -0.94 -27.08 13.70 55.49 0.76 -26.32 16 24 Si 1.08 24.41 29.92 -169.99 -5.09 19.32 16 25 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 37 H 0.41 6.89 7.19 -40.82 -0.29 6.60 16 38 H 0.16 1.83 7.96 -52.49 -0.42 1.42 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.37 8.63 6.63 -40.82 -0.27 8.36 16 43 H 0.26 7.30 6.77 -40.82 -0.28 7.03 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -30.00 368.98 -9.83 -39.83 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.67 Total: 13.80 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.39 Total: -8.69 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.05 Total: -60.02 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.32 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.39 Total: 0.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.00 -9.83 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.698 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds