Wall clock time and date at job start Tue Mar 31 2020 17:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21625 * 120.00357 * 0.02562 * 8 7 6 10 10 C 1.47202 * 120.00047 * 180.02562 * 8 7 6 11 11 C 1.33789 * 124.64912 * 179.72427 * 10 8 7 12 12 C 1.40100 * 115.49852 * 179.79178 * 11 10 8 13 13 C 1.41714 * 129.98932 * 180.19374 * 12 11 10 14 14 C 1.36042 * 119.33595 * 180.32482 * 13 12 11 15 15 N 1.32306 * 121.58241 * 359.97438 * 14 13 12 16 16 C 1.31366 * 122.05165 * 0.02562 * 15 14 13 17 17 C 1.39728 * 120.59927 * 359.97438 * 16 15 14 18 18 S 1.75532 * 124.64613 * 0.02562 * 10 8 7 19 19 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 29 29 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 32 32 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 34 34 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 36 36 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 37 37 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 38 38 H 1.08002 * 122.25221 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.33423 * 0.30125 * 13 12 11 40 40 H 1.08004 * 119.20654 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.69451 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1738 -1.1247 1.8251 10 6 5.8741 -2.4518 3.7185 11 6 7.1653 -2.6571 4.0024 12 6 7.4163 -3.4435 5.1344 13 6 8.6477 -3.8456 5.7091 14 6 8.6399 -4.6268 6.8228 15 7 7.5088 -5.0213 7.3846 16 6 6.3352 -4.6830 6.9009 17 6 6.2401 -3.8825 5.7597 18 16 4.8453 -3.2687 4.8828 19 7 1.5517 -2.1025 1.2491 20 6 0.3102 -2.3897 1.7504 21 1 -0.3092 -1.5980 2.1454 22 6 -0.1524 -3.6985 1.7509 23 7 0.6002 -4.6626 1.2645 24 14 -1.8463 -4.0903 2.4340 25 1 -1.7368 -4.3972 3.8828 26 1 -2.7402 -2.9201 2.2420 27 1 -2.4084 -5.2649 1.7203 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9331 -1.1563 0.3175 36 1 3.9337 0.3018 1.3383 37 1 3.4281 -1.9369 2.9842 38 1 7.9607 -2.2420 3.4012 39 1 9.5830 -3.5353 5.2672 40 1 9.5795 -4.9324 7.2589 41 1 5.4357 -5.0261 7.3904 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698963820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:32 Heat of formation + Delta-G solvation = 4.356157 kcal Electronic energy + Delta-G solvation = -25607.649665 eV Core-core repulsion = 21971.449178 eV Total energy + Delta-G solvation = -3636.200487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58282 -40.92493 -38.98313 -37.18141 -35.57445 -35.21246 -32.52676 -32.21477 -31.62559 -29.60875 -27.52516 -26.42971 -25.42666 -24.99302 -23.69467 -22.50325 -21.59686 -20.84924 -19.83334 -19.32907 -18.06610 -17.72981 -17.34665 -16.86387 -16.75390 -16.30095 -16.03906 -15.63817 -15.48895 -15.43026 -15.26289 -15.03349 -14.87876 -14.52198 -14.09058 -13.77007 -13.56289 -13.17840 -12.93956 -12.91491 -12.84802 -12.66909 -12.51701 -12.05892 -11.93445 -11.91792 -11.60070 -11.51473 -11.41459 -11.17362 -11.06471 -10.82388 -10.79263 -10.43886 -10.13317 -9.06250 -9.04716 -8.25812 -5.21977 -1.01856 -0.08252 0.11838 0.60497 0.76494 1.62396 1.70699 1.83806 1.84565 1.92203 2.65645 2.74913 3.30441 3.43577 3.49654 3.56078 3.68699 3.74422 3.79599 3.79757 4.18478 4.20932 4.28135 4.33114 4.43310 4.50127 4.57220 4.61638 4.63514 4.83956 4.89073 4.90899 4.95404 5.03204 5.07633 5.15601 5.19834 5.36082 5.50614 5.55546 5.69699 5.74018 6.22676 6.58726 6.80825 6.84113 7.14416 8.04240 8.16850 9.24264 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.003477 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.632059 B = 8051.478028 C =10026.176839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.176 3.824 5 H 0.055 0.945 6 C 0.119 3.881 7 N -0.706 5.706 8 C 0.583 3.417 9 O -0.560 6.560 10 C -0.227 4.227 11 C -0.044 4.044 12 C -0.062 4.062 13 C -0.110 4.110 14 C 0.073 3.927 15 N -0.481 5.481 16 C 0.151 3.849 17 C -0.208 4.208 18 S 0.165 5.835 19 N -0.740 5.740 20 C -0.304 4.304 21 H 0.071 0.929 22 C -0.099 4.099 23 N -0.978 5.978 24 Si 1.117 2.883 25 H -0.287 1.287 26 H -0.275 1.275 27 H -0.302 1.302 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.407 0.593 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.195 0.805 41 H 0.180 0.820 42 H 0.358 0.642 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.580 6.571 8.866 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.068 3.932 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.356 5.356 8 C 0.368 3.632 9 O -0.441 6.441 10 C -0.347 4.347 11 C -0.078 4.078 12 C -0.077 4.077 13 C -0.132 4.132 14 C -0.076 4.076 15 N -0.190 5.190 16 C -0.019 4.019 17 C -0.327 4.327 18 S 0.431 5.569 19 N -0.382 5.382 20 C -0.436 4.436 21 H 0.089 0.911 22 C -0.291 4.291 23 N -0.627 5.627 24 Si 0.944 3.056 25 H -0.214 1.214 26 H -0.200 1.200 27 H -0.229 1.229 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.243 0.757 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.212 0.788 41 H 0.197 0.803 42 H 0.190 0.810 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.361 5.326 9.590 15.792 hybrid contribution 2.106 1.172 -1.449 2.812 sum 13.466 6.498 8.141 17.025 Atomic orbital electron populations 1.21715 0.95345 1.01741 1.00259 1.21609 0.96477 0.96439 0.98130 1.21859 1.01007 0.94726 1.02303 1.20640 0.89770 0.85799 0.97020 0.92674 1.21801 0.94783 0.95890 0.88015 1.45927 1.06072 1.52551 1.31006 1.17304 0.82576 0.79838 0.83439 1.90767 1.55927 1.49913 1.47489 1.23916 0.98911 1.08790 1.03100 1.20311 0.95959 0.95942 0.95549 1.18563 0.94642 0.99003 0.95509 1.22167 0.97229 0.97361 0.96415 1.22781 0.97367 0.94430 0.93011 1.67787 0.98714 1.21207 1.31305 1.22659 0.97279 0.91891 0.90103 1.24328 0.97914 1.06897 1.03526 1.84692 1.04794 1.47731 1.19660 1.42600 1.17570 1.03488 1.74504 1.20206 0.94087 0.94838 1.34431 0.91120 1.26768 1.08082 0.92031 1.02229 1.70965 1.11529 1.34228 1.45931 0.82726 0.71978 0.75270 0.75584 1.21400 1.20028 1.22948 0.93600 0.92939 0.93298 0.93081 0.92121 0.91899 0.92229 0.92430 0.89110 0.75715 0.81287 0.80701 0.78819 0.80308 0.81020 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.26 71.98 0.59 -3.97 16 2 C -0.10 -3.36 2.69 -10.80 -0.03 -3.39 16 3 C -0.14 -3.46 8.84 71.98 0.64 -2.83 16 4 C 0.18 6.24 2.18 44.99 0.10 6.33 16 5 H 0.06 1.98 8.08 -2.38 -0.02 1.97 16 6 C 0.12 3.86 4.73 86.38 0.41 4.26 16 7 N -0.71 -23.55 5.38 -466.59 -2.51 -26.06 16 8 C 0.58 19.50 7.80 86.60 0.68 20.17 16 9 O -0.56 -20.96 16.73 -4.11 -0.07 -21.03 16 10 C -0.23 -6.57 6.33 23.62 0.15 -6.42 16 11 C -0.04 -1.10 9.81 21.71 0.21 -0.88 16 12 C -0.06 -1.38 5.91 -21.48 -0.13 -1.50 16 13 C -0.11 -1.74 10.13 22.62 0.23 -1.51 16 14 C 0.07 1.15 11.06 84.11 0.93 2.09 16 15 N -0.48 -10.03 10.34 -196.33 -2.03 -12.06 16 16 C 0.15 3.24 11.24 85.12 0.96 4.20 16 17 C -0.21 -4.99 6.54 23.12 0.15 -4.84 16 18 S 0.16 4.46 22.26 -56.49 -1.26 3.20 16 19 N -0.74 -33.01 4.44 -322.94 -1.43 -34.44 16 20 C -0.30 -15.21 7.57 84.03 0.64 -14.57 16 21 H 0.07 3.47 7.39 -2.91 -0.02 3.44 16 22 C -0.10 -5.37 5.50 84.86 0.47 -4.90 16 23 N -0.98 -58.18 13.70 21.65 0.30 -57.88 16 24 Si 1.12 49.79 29.92 68.60 2.05 51.84 16 25 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 1.39 6.55 -2.39 -0.02 1.37 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.63 6.71 -2.39 -0.02 2.61 16 37 H 0.41 14.09 7.19 -92.71 -0.67 13.43 16 38 H 0.17 3.69 7.96 -2.91 -0.02 3.67 16 39 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.36 17.44 6.63 -92.71 -0.61 16.82 16 43 H 0.24 14.50 6.77 -92.71 -0.63 13.88 16 Total: -1.00 -65.76 368.98 0.95 -64.81 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.09 Total: 39.40 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.99 Total: -7.77 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.68 Total: -130.45 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.07 Total: -21.03 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.26 Total: 3.20 kcal Total: -65.76 0.95 -64.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.162 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds