Wall clock time and date at job start Tue Mar 31 2020 17:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21576 * 120.00524 * 0.02562 * 8 7 6 10 10 C 1.47664 * 119.99514 * 179.97438 * 8 7 6 11 11 C 1.40157 * 119.85740 * 359.72936 * 10 8 7 12 12 C 1.36217 * 120.07975 * 179.73840 * 11 10 8 13 13 C 1.39577 * 120.43301 * 0.51702 * 12 11 10 14 14 S 1.76145 * 131.53423 * 179.75907 * 13 12 11 15 15 C 1.70629 * 90.85961 * 179.97438 * 14 13 12 16 16 N 1.27857 * 111.58465 * 0.02562 * 15 14 13 17 17 C 1.34741 * 117.84302 * 359.97438 * 16 15 14 18 18 C 1.38721 * 119.85413 * 180.02562 * 10 8 7 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08001 * 119.95882 * 359.97438 * 11 10 8 39 39 H 1.07998 * 119.78403 * 180.29955 * 12 11 10 40 40 H 1.07997 * 124.21029 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.97156 * 359.97438 * 18 10 8 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0422 -4.7527 1.8256 10 6 2.3945 -4.9149 3.7226 11 6 3.2791 -4.2588 4.5895 12 6 3.8212 -4.9267 5.6457 13 6 3.5106 -6.2692 5.8680 14 16 4.0359 -7.3989 7.1132 15 6 3.0850 -8.6380 6.4264 16 7 2.4587 -8.2301 5.3890 17 6 2.6332 -6.9484 5.0120 18 6 2.0750 -6.2492 3.9274 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 3.5283 -3.2213 4.4220 39 1 4.4985 -4.4151 6.3135 40 1 3.0201 -9.6420 6.8191 41 1 1.3962 -6.7509 3.2537 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698977379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:40 Heat of formation + Delta-G solvation = 26.561508 kcal Electronic energy + Delta-G solvation = -25745.340725 eV Core-core repulsion = 22110.103134 eV Total energy + Delta-G solvation = -3635.237591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.77409 -39.45693 -37.49657 -36.69722 -34.08591 -33.48492 -31.44440 -30.64932 -30.00077 -27.94009 -26.14425 -25.40518 -24.28428 -23.23602 -22.34891 -21.80852 -20.25237 -19.42980 -18.87174 -17.62512 -17.18138 -16.58223 -16.41047 -15.46002 -15.31540 -14.98109 -14.78334 -14.49054 -14.13556 -14.08754 -13.83798 -13.69832 -13.50629 -13.29935 -13.00827 -12.37347 -12.19481 -12.09219 -11.91043 -11.69048 -11.27393 -11.24851 -10.98362 -10.83790 -10.47200 -10.36161 -10.20316 -10.11809 -9.96576 -9.94358 -9.83587 -9.26426 -9.06293 -8.97495 -8.77389 -8.36771 -7.15516 -6.17440 -3.19833 0.13856 0.57842 0.95016 1.41186 2.02847 2.85080 3.23180 3.45390 3.47635 3.65478 3.69230 3.80615 4.33667 4.57690 4.70804 4.79924 4.87495 4.99136 5.19163 5.24187 5.30213 5.45048 5.54996 5.61521 5.67879 5.77325 5.81851 5.87570 5.92561 6.03830 6.08180 6.13432 6.27270 6.32357 6.34112 6.43539 6.52701 6.56475 6.78126 6.96574 7.22996 7.26900 7.73093 7.73351 8.34921 8.65995 9.10277 9.97211 10.12138 11.29220 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003163 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.505395 B = 8851.397562 C =10798.696119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.705 5.705 8 C 0.556 3.444 9 O -0.545 6.545 10 C -0.116 4.116 11 C -0.064 4.064 12 C -0.076 4.076 13 C -0.161 4.161 14 S 0.101 5.899 15 C 0.061 3.939 16 N -0.457 5.457 17 C 0.065 3.935 18 C 0.001 3.999 19 N -0.733 5.733 20 C -0.329 4.329 21 H 0.068 0.932 22 C -0.041 4.041 23 N -0.940 5.940 24 Si 1.074 2.926 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.296 1.296 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.205 0.795 41 H 0.149 0.851 42 H 0.368 0.632 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -9.773 10.485 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.195 4.195 4 C 0.065 3.935 5 H 0.073 0.927 6 C -0.013 4.013 7 N -0.357 5.357 8 C 0.342 3.658 9 O -0.424 6.424 10 C -0.122 4.122 11 C -0.086 4.086 12 C -0.098 4.098 13 C -0.280 4.280 14 S 0.354 5.646 15 C -0.244 4.244 16 N -0.169 5.169 17 C -0.054 4.054 18 C -0.021 4.021 19 N -0.376 5.376 20 C -0.460 4.460 21 H 0.085 0.915 22 C -0.239 4.239 23 N -0.585 5.585 24 Si 0.905 3.095 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.221 0.779 41 H 0.167 0.833 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.916 -9.762 10.931 15.805 hybrid contribution -1.473 -0.251 -0.869 1.728 sum -7.389 -10.013 10.062 16.003 Atomic orbital electron populations 1.21945 0.96724 1.01005 1.01053 1.21712 0.93657 0.97901 0.99784 1.21811 1.04246 0.94475 0.99018 1.20492 0.85825 0.90957 0.96254 0.92660 1.21824 0.97621 0.93231 0.88602 1.45915 1.48305 1.10534 1.30944 1.18011 0.81353 0.82084 0.84357 1.90764 1.36526 1.68001 1.47149 1.19802 1.00531 0.94307 0.97560 1.21154 0.94074 1.00650 0.92736 1.20019 1.00486 0.90693 0.98618 1.24088 1.03559 1.00176 1.00223 1.84038 1.48322 1.03007 1.29206 1.28091 0.96895 1.04565 0.94855 1.66200 1.22865 1.13571 1.14280 1.19069 0.99608 0.88588 0.98172 1.20720 0.95975 0.91937 0.93475 1.42486 0.99412 1.20961 1.74722 1.19980 0.91556 0.97361 1.37078 0.91453 1.25678 0.93389 1.03659 1.01196 1.70893 1.37400 1.07053 1.43153 0.83314 0.76438 0.74249 0.75467 1.21150 1.22276 1.22301 0.93119 0.93455 0.93024 0.92038 0.89470 0.94981 0.94028 0.91159 0.91706 0.75290 0.83665 0.84285 0.77856 0.83283 0.79866 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 37.16 0.33 -1.73 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.45 8.26 37.16 0.31 -2.14 16 4 C 0.18 3.10 2.18 -67.93 -0.15 2.95 16 5 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.11 1.82 4.73 -4.04 -0.02 1.80 16 7 N -0.71 -11.30 5.34 -61.31 -0.33 -11.63 16 8 C 0.56 9.21 7.76 -12.41 -0.10 9.11 16 9 O -0.55 -10.48 16.30 5.30 0.09 -10.39 16 10 C -0.12 -1.68 5.86 -105.15 -0.62 -2.30 16 11 C -0.06 -0.82 9.47 -39.59 -0.37 -1.19 16 12 C -0.08 -0.88 9.99 -39.81 -0.40 -1.28 16 13 C -0.16 -1.96 6.56 -38.37 -0.25 -2.21 16 14 S 0.10 0.90 23.17 -107.50 -2.49 -1.59 16 15 C 0.06 0.55 12.10 51.11 0.62 1.17 16 16 N -0.46 -5.80 10.57 -13.02 -0.14 -5.94 16 17 C 0.06 0.89 6.99 -84.99 -0.59 0.29 16 18 C 0.00 0.01 9.65 -38.51 -0.37 -0.36 16 19 N -0.73 -15.87 4.44 -53.43 -0.24 -16.11 16 20 C -0.33 -8.06 7.57 -15.06 -0.11 -8.18 16 21 H 0.07 1.64 7.40 -52.48 -0.39 1.26 16 22 C -0.04 -1.08 5.50 -17.43 -0.10 -1.17 16 23 N -0.94 -26.91 13.70 55.49 0.76 -26.15 16 24 Si 1.07 24.14 29.92 -169.99 -5.09 19.06 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.30 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.85 6.01 -51.93 -0.31 1.53 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.08 6.71 -51.92 -0.35 0.73 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.41 6.46 6.14 -40.82 -0.25 6.21 16 38 H 0.15 1.76 6.37 -52.49 -0.33 1.43 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.15 2.16 7.60 -52.49 -0.40 1.76 16 42 H 0.37 8.56 6.63 -40.82 -0.27 8.29 16 43 H 0.26 7.25 6.77 -40.82 -0.28 6.98 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -30.52 366.12 -9.50 -40.02 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.52 Total: 14.49 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.07 Total: -7.28 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.06 Total: -59.82 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.09 Total: 19.06 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.52 -9.50 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698977379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.581 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds