Wall clock time and date at job start Tue Mar 31 2020 17:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21576 * 120.00524 * 0.02562 * 8 7 6 10 10 C 1.47664 * 119.99514 * 179.97438 * 8 7 6 11 11 C 1.40157 * 119.85740 * 359.72936 * 10 8 7 12 12 C 1.36217 * 120.07975 * 179.73840 * 11 10 8 13 13 C 1.39577 * 120.43301 * 0.51702 * 12 11 10 14 14 S 1.76145 * 131.53423 * 179.75907 * 13 12 11 15 15 C 1.70629 * 90.85961 * 179.97438 * 14 13 12 16 16 N 1.27857 * 111.58465 * 0.02562 * 15 14 13 17 17 C 1.34741 * 117.84302 * 359.97438 * 16 15 14 18 18 C 1.38721 * 119.85413 * 180.02562 * 10 8 7 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08001 * 119.95882 * 359.97438 * 11 10 8 39 39 H 1.07998 * 119.78403 * 180.29955 * 12 11 10 40 40 H 1.07997 * 124.21029 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.97156 * 359.97438 * 18 10 8 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0422 -4.7527 1.8256 10 6 2.3945 -4.9149 3.7226 11 6 3.2791 -4.2588 4.5895 12 6 3.8212 -4.9267 5.6457 13 6 3.5106 -6.2692 5.8680 14 16 4.0359 -7.3989 7.1132 15 6 3.0850 -8.6380 6.4264 16 7 2.4587 -8.2301 5.3890 17 6 2.6332 -6.9484 5.0120 18 6 2.0750 -6.2492 3.9274 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 3.5283 -3.2213 4.4220 39 1 4.4985 -4.4151 6.3135 40 1 3.0201 -9.6420 6.8191 41 1 1.3962 -6.7509 3.2537 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698977379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:39 Heat of formation + Delta-G solvation = 7.133200 kcal Electronic energy + Delta-G solvation = -25746.183199 eV Core-core repulsion = 22110.103134 eV Total energy + Delta-G solvation = -3636.080066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79525 -40.67562 -38.94054 -37.73345 -35.53555 -35.18529 -32.50200 -32.06183 -31.26271 -29.38616 -27.46296 -26.33398 -25.73692 -24.74764 -23.40241 -23.12319 -21.51550 -20.75731 -19.87387 -19.36898 -18.38502 -17.69880 -17.42545 -16.75138 -16.60166 -16.35894 -16.06848 -15.73266 -15.50630 -15.31947 -15.10930 -15.01373 -14.80587 -14.43615 -14.20909 -13.71616 -13.54744 -13.16582 -13.00039 -12.90402 -12.80565 -12.65218 -12.46791 -12.19629 -11.96328 -11.90521 -11.57264 -11.49333 -11.28661 -11.22739 -11.14096 -10.78982 -10.76705 -10.21870 -9.92404 -9.23617 -9.03779 -8.23368 -5.19563 -0.75584 -0.45761 0.15069 0.60812 1.12323 1.64304 1.70017 1.71728 1.87389 2.00356 2.59486 2.76980 2.94720 3.40573 3.50152 3.57658 3.72808 3.78343 3.87721 4.01135 4.07859 4.21779 4.23614 4.36863 4.39041 4.55599 4.60120 4.67395 4.86268 4.90443 4.91144 4.93150 5.00001 5.03246 5.10055 5.19643 5.23514 5.35712 5.43025 5.57318 5.71028 5.76039 6.40138 6.45360 6.60972 7.02696 7.16936 8.07008 8.20030 9.26599 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003163 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.505395 B = 8851.397562 C =10798.696119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.133 4.133 4 C 0.178 3.822 5 H 0.058 0.942 6 C 0.119 3.881 7 N -0.702 5.702 8 C 0.556 3.444 9 O -0.577 6.577 10 C -0.126 4.126 11 C -0.073 4.073 12 C -0.068 4.068 13 C -0.183 4.183 14 S 0.164 5.836 15 C 0.073 3.927 16 N -0.498 5.498 17 C 0.053 3.947 18 C -0.015 4.015 19 N -0.739 5.739 20 C -0.304 4.304 21 H 0.071 0.929 22 C -0.100 4.100 23 N -0.979 5.979 24 Si 1.116 2.884 25 H -0.302 1.302 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.411 0.589 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.247 0.753 41 H 0.136 0.864 42 H 0.358 0.642 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 -9.787 12.664 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.070 3.930 5 H 0.076 0.924 6 C -0.005 4.005 7 N -0.353 5.353 8 C 0.344 3.656 9 O -0.459 6.459 10 C -0.132 4.132 11 C -0.096 4.096 12 C -0.090 4.090 13 C -0.303 4.303 14 S 0.419 5.581 15 C -0.231 4.231 16 N -0.211 5.211 17 C -0.066 4.066 18 C -0.037 4.037 19 N -0.381 5.381 20 C -0.435 4.435 21 H 0.089 0.911 22 C -0.291 4.291 23 N -0.627 5.627 24 Si 0.943 3.057 25 H -0.229 1.229 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.249 0.751 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.263 0.737 41 H 0.154 0.846 42 H 0.190 0.810 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.502 -9.753 13.135 17.605 hybrid contribution -1.351 -0.354 -1.451 2.014 sum -7.853 -10.107 11.684 17.330 Atomic orbital electron populations 1.21857 0.93830 1.01932 1.02272 1.21621 0.96026 0.96859 0.98285 1.21714 1.01622 0.95413 1.00273 1.20613 0.83543 0.91990 0.96898 0.92442 1.21726 0.98377 0.92112 0.88278 1.45878 1.48166 1.10517 1.30735 1.18332 0.80770 0.81990 0.84529 1.90733 1.38098 1.68589 1.48491 1.19627 1.01647 0.94411 0.97503 1.21169 0.94331 1.00860 0.93204 1.20293 0.99897 0.90686 0.98158 1.24454 1.03490 1.00931 1.01406 1.83863 1.46721 1.00914 1.26647 1.28911 0.94723 1.06254 0.93180 1.66254 1.25132 1.13335 1.16372 1.19165 0.99867 0.89423 0.98167 1.20660 0.96631 0.92118 0.94265 1.42596 1.01051 1.19949 1.74467 1.20192 0.91513 0.97438 1.34351 0.91091 1.26758 0.94969 1.05060 1.02338 1.70996 1.37627 1.07900 1.46208 0.82747 0.74443 0.72361 0.76140 1.22904 1.21172 1.20234 0.92137 0.92015 0.92291 0.93294 0.93292 0.93077 0.93448 0.89610 0.92985 0.75092 0.83413 0.81758 0.73693 0.84578 0.80986 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.90 16 2 C -0.11 -3.43 2.69 -10.79 -0.03 -3.46 16 3 C -0.13 -4.55 8.26 71.98 0.59 -3.95 16 4 C 0.18 6.24 2.18 44.99 0.10 6.34 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.12 3.91 4.73 86.38 0.41 4.32 16 7 N -0.70 -22.96 5.34 -466.15 -2.49 -25.45 16 8 C 0.56 19.12 7.76 86.73 0.67 19.80 16 9 O -0.58 -23.09 16.30 -3.96 -0.06 -23.16 16 10 C -0.13 -3.79 5.86 -20.21 -0.12 -3.91 16 11 C -0.07 -1.88 9.47 22.27 0.21 -1.67 16 12 C -0.07 -1.51 9.99 22.12 0.22 -1.29 16 13 C -0.18 -4.19 6.56 23.05 0.15 -4.04 16 14 S 0.16 2.42 23.17 -56.49 -1.31 1.11 16 15 C 0.07 1.11 12.10 130.82 1.58 2.70 16 16 N -0.50 -12.09 10.57 -194.90 -2.06 -14.15 16 17 C 0.05 1.45 6.99 39.73 0.28 1.73 16 18 C -0.02 -0.45 9.65 22.96 0.22 -0.23 16 19 N -0.74 -32.40 4.44 -322.95 -1.43 -33.83 16 20 C -0.30 -14.89 7.57 84.03 0.64 -14.25 16 21 H 0.07 3.40 7.40 -2.91 -0.02 3.38 16 22 C -0.10 -5.29 5.50 84.86 0.47 -4.82 16 23 N -0.98 -57.43 13.70 21.65 0.30 -57.14 16 24 Si 1.12 48.79 29.92 68.60 2.05 50.84 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.40 6.55 -2.39 -0.02 1.39 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.57 6.71 -2.38 -0.02 2.55 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 13.22 6.14 -92.71 -0.57 12.65 16 38 H 0.15 3.63 6.37 -2.91 -0.02 3.61 16 39 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.25 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 4.29 7.60 -2.91 -0.02 4.27 16 42 H 0.36 17.21 6.63 -92.71 -0.61 16.60 16 43 H 0.24 14.32 6.77 -92.71 -0.63 13.70 16 Total: -1.00 -67.75 366.12 1.04 -66.71 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: 0.02 Total: 40.73 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 6.03 Total: -5.65 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -5.68 Total: -130.57 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Total: -67.75 1.04 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698977379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.841 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds