Wall clock time and date at job start Tue Mar 31 2020 18:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47233 * 2 1 4 4 C 1.53000 * 109.47250 * 240.00171 * 2 1 3 5 5 N 1.46899 * 109.47118 * 184.99941 * 4 2 1 6 6 C 1.46898 * 110.99840 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47217 * 179.97438 * 6 5 4 8 8 C 1.38379 * 119.92668 * 270.02296 * 7 6 5 9 9 C 1.38342 * 120.30330 * 179.97438 * 8 7 6 10 10 C 1.37971 * 120.15414 * 359.76671 * 9 8 7 11 11 C 1.39616 * 119.84000 * 0.50917 * 10 9 8 12 12 C 1.43205 * 120.14614 * 179.74514 * 11 10 9 13 13 N 8.56898 * 145.78513 * 185.38650 * 2 1 3 14 14 C 1.37927 * 119.91800 * 89.99937 * 7 6 5 15 15 N 1.46504 * 109.47485 * 120.00044 * 2 1 3 16 16 C 1.34771 * 120.00267 * 275.00319 * 15 2 1 17 17 O 1.21286 * 119.99981 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00263 * 179.97438 * 16 15 2 19 19 S 1.81001 * 109.47218 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99980 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00159 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00257 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00309 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47297 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47154 * 120.00122 * 24 22 20 27 27 H 1.48504 * 109.47316 * 240.00085 * 24 22 20 28 28 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47220 * 299.99770 * 1 2 3 30 30 H 1.09000 * 109.47058 * 59.99468 * 1 2 3 31 31 H 1.09005 * 109.46716 * 65.00196 * 4 2 1 32 32 H 1.08993 * 109.47462 * 305.00025 * 4 2 1 33 33 H 1.00895 * 111.00041 * 56.04677 * 5 4 2 34 34 H 1.09002 * 109.47233 * 59.99920 * 6 5 4 35 35 H 1.09001 * 109.47479 * 299.99876 * 6 5 4 36 36 H 1.08001 * 119.84560 * 359.97438 * 8 7 6 37 37 H 1.08002 * 119.92142 * 180.02562 * 9 8 7 38 38 H 1.07990 * 120.07818 * 180.25521 * 10 9 8 39 39 H 1.08003 * 120.08118 * 0.04592 * 14 7 6 40 40 H 0.97002 * 119.99624 * 94.99636 * 15 2 1 41 41 H 1.09004 * 109.47497 * 299.99922 * 18 16 15 42 42 H 1.09008 * 109.46971 * 60.00013 * 18 16 15 43 43 H 0.96997 * 119.99973 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0304 -1.5147 -2.3767 7 6 5.5318 -1.6032 -2.2813 8 6 6.3176 -0.5912 -2.8041 9 6 7.6966 -0.6642 -2.7203 10 6 8.2975 -1.7458 -2.1099 11 6 7.5109 -2.7731 -1.5855 12 6 8.1280 -3.9014 -0.9554 13 7 8.6160 -4.7970 -0.4523 14 6 6.1194 -2.6925 -1.6727 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8590 1.1585 2.4116 18 6 2.6490 -0.7289 3.5876 19 16 2.7093 0.4339 4.9734 20 6 3.3127 -0.6312 6.2406 21 1 3.5221 -1.6677 6.0206 22 6 3.5189 -0.1384 7.5217 23 7 3.2633 1.1246 7.7900 24 14 4.1580 -1.2679 8.8653 25 1 4.3643 -2.6298 8.3106 26 1 5.4480 -0.7433 9.3809 27 1 3.1703 -1.3282 9.9726 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -0.1582 -2.1370 32 1 1.6055 -1.7197 -1.2953 33 1 3.7996 -1.2883 -0.3434 34 1 3.7558 -0.9569 -3.2720 35 1 3.6096 -2.5188 -2.4310 36 1 5.8522 0.2595 -3.2796 37 1 8.3039 0.1293 -3.1301 38 1 9.3739 -1.7995 -2.0416 39 1 5.5050 -3.4819 -1.2654 40 1 2.2491 -1.6318 1.1525 41 1 1.9761 -1.5508 3.8326 42 1 3.6482 -1.1214 3.3984 43 1 3.4070 1.4690 8.6854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699354875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:39 Heat of formation + Delta-G solvation = -12.705832 kcal Electronic energy + Delta-G solvation = -24377.611597 eV Core-core repulsion = 20740.671246 eV Total energy + Delta-G solvation = -3636.940351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80263 -40.45615 -38.07730 -37.45045 -35.53103 -34.58545 -33.03124 -32.22993 -31.79504 -29.93628 -27.66051 -27.43403 -24.88699 -24.73106 -22.64889 -22.42117 -21.46746 -19.88967 -19.36550 -17.94338 -17.32312 -17.16703 -16.88562 -16.79483 -16.42017 -16.15570 -15.96109 -15.71621 -15.28354 -15.02836 -14.77163 -14.57843 -14.35166 -14.17519 -14.00536 -13.90375 -13.84359 -13.25760 -13.17337 -13.14607 -13.04250 -12.92194 -12.86653 -12.67845 -12.52989 -12.21043 -12.06697 -11.75639 -11.67241 -11.16108 -10.85957 -10.25865 -10.07276 -9.89819 -9.80343 -9.27577 -8.65104 -8.35082 -6.12109 -0.15448 0.37970 1.27831 1.39926 1.47130 1.56577 1.58358 1.69262 1.92735 2.25947 2.34842 2.80290 2.89169 2.99021 3.31383 3.38304 3.82617 3.89356 3.96702 4.07089 4.17230 4.26304 4.31197 4.34913 4.42101 4.45473 4.52275 4.62305 4.72594 4.79061 4.80865 4.85967 4.89778 5.08586 5.15196 5.32339 5.33732 5.41830 5.43866 5.60593 5.61487 5.91312 6.09027 6.19740 6.39270 6.41363 6.55855 7.06632 7.32800 8.74320 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008389 B = 0.002824 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.705347 B = 9911.510445 C =12418.413036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.066 0.934 4 C 0.065 3.935 5 N -0.699 5.699 6 C 0.101 3.899 7 C -0.091 4.091 8 C -0.065 4.065 9 C -0.121 4.121 10 C -0.070 4.070 11 C -0.050 4.050 12 C 0.277 3.723 13 N -0.472 5.472 14 C -0.066 4.066 15 N -0.707 5.707 16 C 0.538 3.462 17 O -0.563 6.563 18 C -0.131 4.131 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.341 0.659 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.410 0.590 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -7.663 -29.293 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.064 4.064 5 N -0.331 5.331 6 C -0.027 4.027 7 C -0.092 4.092 8 C -0.085 4.085 9 C -0.139 4.139 10 C -0.091 4.091 11 C -0.053 4.053 12 C -0.038 4.038 13 N -0.148 5.148 14 C -0.088 4.088 15 N -0.361 5.361 16 C 0.324 3.676 17 O -0.441 6.441 18 C -0.282 4.282 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.247 0.753 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.491 -6.354 -28.602 29.405 hybrid contribution 0.442 -2.620 1.313 2.963 sum 2.933 -8.974 -27.289 28.877 Atomic orbital electron populations 1.22115 0.94431 1.02906 1.02280 1.21085 0.94156 0.97325 0.83553 0.91534 1.22220 0.87144 1.00196 0.96871 1.60425 1.10120 1.57450 1.05141 1.20938 0.89015 0.98314 0.94396 1.19812 0.96289 0.94128 0.98957 1.21623 0.93705 0.97484 0.95648 1.21419 0.95222 0.98175 0.99107 1.21434 1.00708 0.92077 0.94885 1.16074 0.93514 0.91262 1.04465 1.26183 0.92506 0.92746 0.92327 1.81350 1.09823 1.12463 1.11211 1.21202 0.92242 0.98573 0.96740 1.45785 1.67579 1.14160 1.08570 1.19928 0.76621 0.86521 0.84567 1.90691 1.50602 1.17709 1.85118 1.23388 1.05326 1.03168 0.96360 1.85550 1.86625 1.17302 1.02708 1.23230 1.50782 0.98419 0.96940 0.90148 1.26089 0.95113 0.97160 1.00687 1.70185 1.46883 1.15399 1.22199 0.84943 0.77896 0.78208 0.77135 1.18253 1.19949 1.19815 0.90927 0.95030 0.89448 0.87676 0.92430 0.84072 0.88243 0.92666 0.83468 0.82553 0.83911 0.84502 0.75325 0.87546 0.87526 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.48 71.98 0.68 -2.15 16 2 C 0.14 2.73 2.88 44.99 0.13 2.86 16 3 H 0.07 1.73 7.58 -2.38 -0.02 1.71 16 4 C 0.06 0.68 5.30 86.30 0.46 1.14 16 5 N -0.70 -8.48 6.48 -517.93 -3.36 -11.84 16 6 C 0.10 0.77 5.81 85.56 0.50 1.27 16 7 C -0.09 -0.91 5.39 -19.90 -0.11 -1.02 16 8 C -0.07 -0.58 9.69 22.33 0.22 -0.37 16 9 C -0.12 -1.02 10.03 22.23 0.22 -0.80 16 10 C -0.07 -0.77 9.76 22.54 0.22 -0.55 16 11 C -0.05 -0.71 5.73 -21.36 -0.12 -0.83 16 12 C 0.28 5.54 15.34 88.32 1.35 6.90 16 13 N -0.47 -12.28 18.55 19.02 0.35 -11.92 16 14 C -0.07 -0.79 9.41 22.54 0.21 -0.57 16 15 N -0.71 -15.97 4.36 -442.53 -1.93 -17.90 16 16 C 0.54 19.14 7.81 87.66 0.68 19.83 16 17 O -0.56 -25.61 15.52 -3.05 -0.05 -25.66 16 18 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 19 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 20 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 24 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.34 4.70 7.57 -89.70 -0.68 4.02 16 34 H 0.10 0.52 8.08 -2.39 -0.02 0.50 16 35 H 0.06 0.30 8.08 -2.39 -0.02 0.28 16 36 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.14 1.17 8.06 -2.92 -0.02 1.15 16 39 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.41 6.47 8.15 -92.71 -0.76 5.71 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.75 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -82.24 392.16 1.78 -80.47 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.39 Total: 14.53 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 6.00 Total: -8.49 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.64 Total: -97.61 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -82.24 1.78 -80.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699354875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.760 kcal (2) G-P(sol) polarization free energy of solvation -82.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds