Wall clock time and date at job start Tue Mar 31 2020 18:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47276 * 2 1 4 4 C 1.53004 * 109.46862 * 119.99761 * 2 1 3 5 5 N 1.46908 * 109.46995 * 174.99748 * 4 2 1 6 6 C 1.46898 * 111.00082 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.37974 * 120.07655 * 260.00228 * 7 6 5 9 9 C 1.38342 * 120.14875 * 180.25332 * 8 7 6 10 10 C 1.38385 * 120.30524 * 359.44605 * 9 8 7 11 11 C 1.37922 * 120.15281 * 0.55119 * 10 9 8 12 12 C 1.39608 * 120.07972 * 79.97705 * 7 6 5 13 13 C 1.43205 * 120.14639 * 0.02562 * 12 7 6 14 14 N 5.28763 * 134.25441 * 63.60275 * 2 1 3 15 15 N 1.46499 * 109.47120 * 239.99430 * 2 1 3 16 16 C 1.34780 * 119.99694 * 84.99820 * 15 2 1 17 17 O 1.21277 * 119.99884 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00119 * 179.97438 * 16 15 2 19 19 S 1.81001 * 109.47422 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00102 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99894 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00041 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47245 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46975 * 120.00536 * 24 22 20 27 27 H 1.48498 * 109.47162 * 240.00160 * 24 22 20 28 28 H 1.09003 * 109.46925 * 300.00237 * 1 2 3 29 29 H 1.09002 * 109.46992 * 60.00158 * 1 2 3 30 30 H 1.09002 * 109.47843 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47286 * 55.00155 * 4 2 1 32 32 H 1.08990 * 109.47404 * 294.99796 * 4 2 1 33 33 H 1.00897 * 110.99836 * 56.04565 * 5 4 2 34 34 H 1.09002 * 109.47258 * 59.99831 * 6 5 4 35 35 H 1.08997 * 109.47009 * 300.00174 * 6 5 4 36 36 H 1.08002 * 119.92160 * 359.97132 * 8 7 6 37 37 H 1.08005 * 119.84349 * 179.71729 * 9 8 7 38 38 H 1.08004 * 119.92387 * 180.30078 * 10 9 8 39 39 H 1.07997 * 120.07946 * 179.75021 * 11 10 9 40 40 H 0.96993 * 120.00595 * 265.00508 * 15 2 1 41 41 H 1.09004 * 109.47454 * 300.00624 * 18 16 15 42 42 H 1.09005 * 109.47101 * 60.00380 * 18 16 15 43 43 H 0.97008 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3762 7 6 5.5315 -1.6044 2.2808 8 6 6.1300 -2.7751 1.8625 9 6 7.5083 -2.8597 1.7794 10 6 8.2957 -1.7689 2.1037 11 6 7.7107 -0.5925 2.5233 12 6 6.3201 -0.5019 2.6150 13 6 5.7058 0.7163 3.0500 14 7 5.2199 1.6838 3.3924 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8589 1.1584 -2.4115 18 6 2.6498 -0.7287 -3.5874 19 16 2.7112 0.4344 -4.9729 20 6 3.3142 -0.6310 -6.2402 21 1 3.5236 -1.6674 -6.0201 22 6 3.5201 -0.1382 -7.5214 23 7 3.2653 1.1250 -7.7894 24 14 4.1600 -1.2675 -8.8647 25 1 4.3662 -2.6294 -8.3100 26 1 3.1724 -1.3287 -9.9721 27 1 5.4497 -0.7421 -9.3803 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2953 32 1 1.7516 -0.1583 2.1370 33 1 3.9280 0.0825 1.0824 34 1 3.6094 -2.5200 2.4296 35 1 3.7557 -0.9588 3.2720 36 1 5.5211 -3.6288 1.6037 37 1 7.9718 -3.7800 1.4556 38 1 9.3710 -1.8402 2.0319 39 1 8.3265 0.2568 2.7800 40 1 2.2489 -1.6318 -1.1526 41 1 3.6492 -1.1206 -3.3978 42 1 1.9776 -1.5511 -3.8325 43 1 3.4088 1.4693 -8.6849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699394571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:43 Heat of formation + Delta-G solvation = 12.265448 kcal Electronic energy + Delta-G solvation = -24690.702497 eV Core-core repulsion = 21054.844982 eV Total energy + Delta-G solvation = -3635.857515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16805 -39.28669 -37.03193 -36.72814 -34.69970 -32.38796 -32.07059 -31.72053 -30.88998 -28.42804 -26.98390 -25.43959 -24.54111 -23.77362 -22.04228 -21.44865 -20.16016 -19.08833 -17.79925 -16.97254 -16.44766 -16.15512 -15.95770 -15.51184 -15.04655 -14.83197 -14.77003 -14.62222 -14.31586 -14.18662 -13.90618 -13.53703 -13.33981 -13.18060 -13.11103 -12.77786 -12.65053 -12.52714 -12.40788 -12.38483 -11.98097 -11.81300 -11.61908 -11.37252 -11.04322 -10.97464 -10.94622 -10.71371 -9.75375 -9.40102 -9.35080 -9.26514 -9.03579 -8.79942 -8.73183 -8.16249 -6.43919 -6.17519 -3.87040 0.34884 0.85957 2.31067 2.59554 3.11765 3.22972 3.24533 3.31181 3.34984 3.38729 3.48957 3.79444 3.94190 4.24766 4.26115 4.31083 4.54329 4.63251 4.78728 4.92272 4.95412 5.09197 5.11792 5.17631 5.24221 5.26160 5.33132 5.36100 5.45036 5.48770 5.61440 5.75758 5.81406 5.93549 5.98983 6.00720 6.04372 6.16724 6.24069 6.35762 6.54449 6.79457 6.94164 7.11934 7.64102 7.90993 8.39824 8.77286 9.27922 10.89961 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002700 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.131947 B =10366.277235 C =11954.860880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.084 0.916 4 C 0.051 3.949 5 N -0.678 5.678 6 C 0.090 3.910 7 C -0.033 4.033 8 C -0.100 4.100 9 C -0.088 4.088 10 C -0.120 4.120 11 C -0.070 4.070 12 C -0.027 4.027 13 C 0.248 3.752 14 N -0.411 5.411 15 N -0.719 5.719 16 C 0.533 3.467 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.063 6.063 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.345 0.655 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -11.728 25.053 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.079 4.079 5 N -0.309 5.309 6 C -0.039 4.039 7 C -0.036 4.036 8 C -0.118 4.118 9 C -0.107 4.107 10 C -0.138 4.138 11 C -0.090 4.090 12 C -0.031 4.031 13 C -0.067 4.067 14 N -0.086 5.086 15 N -0.373 5.373 16 C 0.319 3.681 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.163 0.837 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.504 -8.671 24.988 26.830 hybrid contribution 1.015 -2.159 -0.274 2.401 sum 5.519 -10.830 24.714 27.541 Atomic orbital electron populations 1.22150 0.95025 1.02144 1.02787 1.20814 0.93834 0.97384 0.83955 0.89832 1.22331 0.87654 1.01204 0.96672 1.60483 1.05305 1.26420 1.38691 1.20990 0.90038 1.00871 0.91979 1.19796 0.94930 0.92502 0.96381 1.21012 0.94870 0.97337 0.98621 1.21456 0.93746 0.98878 0.96603 1.21138 1.00614 0.92634 0.99428 1.21176 0.92295 0.98593 0.96965 1.15942 0.93115 0.88070 1.05989 1.25745 0.93877 0.93117 0.93977 1.81284 1.07897 1.10461 1.08918 1.45836 1.68721 1.14019 1.08748 1.20265 0.76796 0.87175 0.83868 1.90689 1.48767 1.15842 1.84557 1.23506 1.03648 1.04657 0.98347 1.85389 1.86267 1.13083 0.98861 1.22916 1.50676 0.98179 0.96363 0.90922 1.24989 0.95184 0.95515 0.97961 1.70034 1.45762 1.13214 1.21342 0.86127 0.78502 0.80172 0.80755 1.19611 1.20630 1.20601 0.92081 0.91290 0.92409 0.90003 0.93834 0.83664 0.89007 0.94204 0.84678 0.85026 0.84863 0.84968 0.76523 0.89255 0.89461 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.15 1.72 2.81 -67.93 -0.19 1.53 16 3 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 4 C 0.05 0.43 5.24 -3.82 -0.02 0.41 16 5 N -0.68 -6.15 6.21 -115.06 -0.71 -6.86 16 6 C 0.09 0.64 5.28 -4.98 -0.03 0.61 16 7 C -0.03 -0.24 5.43 -104.21 -0.57 -0.81 16 8 C -0.10 -0.59 9.66 -39.64 -0.38 -0.98 16 9 C -0.09 -0.46 10.04 -39.49 -0.40 -0.86 16 10 C -0.12 -0.64 10.03 -39.64 -0.40 -1.04 16 11 C -0.07 -0.45 9.76 -39.17 -0.38 -0.84 16 12 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 13 C 0.25 2.54 13.31 -22.49 -0.30 2.24 16 14 N -0.41 -5.15 18.53 41.82 0.78 -4.38 16 15 N -0.72 -9.72 4.80 -53.81 -0.26 -9.98 16 16 C 0.53 10.10 7.81 -10.99 -0.09 10.02 16 17 O -0.52 -12.08 15.52 5.56 0.09 -11.99 16 18 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.34 3.78 8.02 -39.29 -0.32 3.46 16 34 H 0.09 0.50 8.00 -51.93 -0.42 0.08 16 35 H 0.04 0.30 7.48 -51.93 -0.39 -0.09 16 36 H 0.14 0.59 8.04 -52.49 -0.42 0.17 16 37 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 38 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -35.87 390.48 -9.37 -45.24 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.06 Total: 3.12 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.59 Total: -7.90 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.54 Total: -46.93 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.87 -9.37 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.509 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds