Wall clock time and date at job start Tue Mar 31 2020 18:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47276 * 2 1 4 4 C 1.53004 * 109.46862 * 119.99761 * 2 1 3 5 5 N 1.46908 * 109.46995 * 174.99748 * 4 2 1 6 6 C 1.46898 * 111.00082 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.37974 * 120.07655 * 260.00228 * 7 6 5 9 9 C 1.38342 * 120.14875 * 180.25332 * 8 7 6 10 10 C 1.38385 * 120.30524 * 359.44605 * 9 8 7 11 11 C 1.37922 * 120.15281 * 0.55119 * 10 9 8 12 12 C 1.39608 * 120.07972 * 79.97705 * 7 6 5 13 13 C 1.43205 * 120.14639 * 0.02562 * 12 7 6 14 14 N 5.28763 * 134.25441 * 63.60275 * 2 1 3 15 15 N 1.46499 * 109.47120 * 239.99430 * 2 1 3 16 16 C 1.34780 * 119.99694 * 84.99820 * 15 2 1 17 17 O 1.21277 * 119.99884 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00119 * 179.97438 * 16 15 2 19 19 S 1.81001 * 109.47422 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00102 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99694 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99894 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00041 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47245 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46975 * 120.00536 * 24 22 20 27 27 H 1.48498 * 109.47162 * 240.00160 * 24 22 20 28 28 H 1.09003 * 109.46925 * 300.00237 * 1 2 3 29 29 H 1.09002 * 109.46992 * 60.00158 * 1 2 3 30 30 H 1.09002 * 109.47843 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47286 * 55.00155 * 4 2 1 32 32 H 1.08990 * 109.47404 * 294.99796 * 4 2 1 33 33 H 1.00897 * 110.99836 * 56.04565 * 5 4 2 34 34 H 1.09002 * 109.47258 * 59.99831 * 6 5 4 35 35 H 1.08997 * 109.47009 * 300.00174 * 6 5 4 36 36 H 1.08002 * 119.92160 * 359.97132 * 8 7 6 37 37 H 1.08005 * 119.84349 * 179.71729 * 9 8 7 38 38 H 1.08004 * 119.92387 * 180.30078 * 10 9 8 39 39 H 1.07997 * 120.07946 * 179.75021 * 11 10 9 40 40 H 0.96993 * 120.00595 * 265.00508 * 15 2 1 41 41 H 1.09004 * 109.47454 * 300.00624 * 18 16 15 42 42 H 1.09005 * 109.47101 * 60.00380 * 18 16 15 43 43 H 0.97008 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3762 7 6 5.5315 -1.6044 2.2808 8 6 6.1300 -2.7751 1.8625 9 6 7.5083 -2.8597 1.7794 10 6 8.2957 -1.7689 2.1037 11 6 7.7107 -0.5925 2.5233 12 6 6.3201 -0.5019 2.6150 13 6 5.7058 0.7163 3.0500 14 7 5.2199 1.6838 3.3924 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8589 1.1584 -2.4115 18 6 2.6498 -0.7287 -3.5874 19 16 2.7112 0.4344 -4.9729 20 6 3.3142 -0.6310 -6.2402 21 1 3.5236 -1.6674 -6.0201 22 6 3.5201 -0.1382 -7.5214 23 7 3.2653 1.1250 -7.7894 24 14 4.1600 -1.2675 -8.8647 25 1 4.3662 -2.6294 -8.3100 26 1 3.1724 -1.3287 -9.9721 27 1 5.4497 -0.7421 -9.3803 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2953 32 1 1.7516 -0.1583 2.1370 33 1 3.9280 0.0825 1.0824 34 1 3.6094 -2.5200 2.4296 35 1 3.7557 -0.9588 3.2720 36 1 5.5211 -3.6288 1.6037 37 1 7.9718 -3.7800 1.4556 38 1 9.3710 -1.8402 2.0319 39 1 8.3265 0.2568 2.7800 40 1 2.2489 -1.6318 -1.1526 41 1 3.6492 -1.1206 -3.3978 42 1 1.9776 -1.5511 -3.8325 43 1 3.4088 1.4693 -8.6849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699394571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:42 Heat of formation + Delta-G solvation = -12.757142 kcal Electronic energy + Delta-G solvation = -24691.787558 eV Core-core repulsion = 21054.844982 eV Total energy + Delta-G solvation = -3636.942576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81580 -40.53067 -37.94650 -37.55063 -35.65497 -34.56303 -33.03951 -32.22531 -31.81616 -29.89939 -27.65531 -27.60432 -25.18469 -24.33404 -22.71799 -22.36312 -21.49160 -19.82589 -19.62689 -17.88710 -17.78167 -16.86613 -16.79721 -16.73340 -16.44310 -16.04998 -16.01135 -15.64771 -15.27066 -15.04734 -14.90729 -14.64674 -14.47681 -14.16003 -14.04481 -13.96812 -13.84210 -13.31686 -13.16058 -13.13623 -13.07573 -13.02155 -12.89672 -12.79705 -12.54367 -12.20641 -11.97705 -11.80539 -11.66637 -11.13776 -10.86041 -10.23295 -10.01997 -9.86813 -9.86001 -9.45566 -8.63862 -8.32406 -6.10185 -0.18699 0.41473 1.30233 1.43216 1.50133 1.53543 1.61218 1.71598 1.94243 2.28944 2.37716 2.78998 2.83914 3.01762 3.25977 3.37331 3.70340 3.76691 3.89011 4.06824 4.12851 4.17137 4.32601 4.38268 4.39879 4.49898 4.53538 4.55769 4.61662 4.68683 4.71731 4.75796 4.87333 5.03760 5.06723 5.25064 5.37852 5.44260 5.48983 5.57441 5.59432 5.88526 5.97230 6.11167 6.22410 6.36920 6.65701 7.08857 7.37745 8.77118 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002700 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.131947 B =10366.277235 C =11954.860880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.051 0.949 4 C 0.061 3.939 5 N -0.685 5.685 6 C 0.092 3.908 7 C -0.041 4.041 8 C -0.103 4.103 9 C -0.085 4.085 10 C -0.121 4.121 11 C -0.076 4.076 12 C -0.052 4.052 13 C 0.270 3.730 14 N -0.465 5.465 15 N -0.691 5.691 16 C 0.533 3.467 17 O -0.573 6.573 18 C -0.125 4.125 19 S -0.156 6.156 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.000 3.000 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.330 0.670 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.417 0.583 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -15.829 25.732 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.069 0.931 4 C -0.068 4.068 5 N -0.315 5.315 6 C -0.036 4.036 7 C -0.044 4.044 8 C -0.122 4.122 9 C -0.103 4.103 10 C -0.139 4.139 11 C -0.097 4.097 12 C -0.056 4.056 13 C -0.044 4.044 14 N -0.141 5.141 15 N -0.344 5.344 16 C 0.319 3.681 17 O -0.452 6.452 18 C -0.276 4.276 19 S 0.071 5.929 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.822 3.178 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.050 0.950 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.254 0.746 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.498 -12.828 25.725 29.267 hybrid contribution 0.740 -0.961 -0.358 1.265 sum 6.238 -13.789 25.366 29.538 Atomic orbital electron populations 1.22090 0.94003 1.03378 1.02060 1.20952 0.94599 0.96125 0.84392 0.93081 1.22267 0.87577 1.02258 0.94680 1.60559 1.05408 1.25559 1.39927 1.21056 0.90189 1.01594 0.90747 1.19896 0.94948 0.92761 0.96772 1.21291 0.95562 0.97269 0.98045 1.21836 0.93591 0.99681 0.95203 1.21462 1.01930 0.92043 0.98494 1.21385 0.91771 0.99623 0.96905 1.16140 0.93976 0.87585 1.07888 1.26170 0.92690 0.93003 0.92580 1.81283 1.09582 1.12078 1.11173 1.45576 1.66720 1.14515 1.07589 1.20042 0.76718 0.86521 0.84814 1.90681 1.51272 1.17927 1.85336 1.23335 1.05349 1.02985 0.95976 1.85605 1.86702 1.17613 1.02979 1.23238 1.50669 0.98444 0.96751 0.89870 1.26152 0.95127 0.97215 1.00806 1.70203 1.47043 1.15561 1.22152 0.84888 0.77779 0.78284 0.76884 1.17809 1.20019 1.19955 0.90128 0.94757 0.90099 0.87186 0.93060 0.85361 0.86588 0.94955 0.82731 0.82529 0.82603 0.84268 0.74562 0.87486 0.87391 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.48 71.98 0.68 -2.55 16 2 C 0.14 3.28 2.81 44.99 0.13 3.41 16 3 H 0.05 1.53 7.58 -2.39 -0.02 1.51 16 4 C 0.06 0.91 5.24 86.30 0.45 1.36 16 5 N -0.68 -11.29 6.21 -517.93 -3.22 -14.51 16 6 C 0.09 1.12 5.28 85.56 0.45 1.57 16 7 C -0.04 -0.52 5.43 -19.60 -0.11 -0.63 16 8 C -0.10 -0.91 9.66 22.23 0.21 -0.70 16 9 C -0.08 -0.60 10.04 22.33 0.22 -0.38 16 10 C -0.12 -0.99 10.03 22.23 0.22 -0.76 16 11 C -0.08 -0.91 9.76 22.54 0.22 -0.69 16 12 C -0.05 -0.81 5.73 -21.36 -0.12 -0.93 16 13 C 0.27 5.69 13.31 88.34 1.18 6.87 16 14 N -0.47 -12.32 18.53 19.00 0.35 -11.97 16 15 N -0.69 -17.71 4.80 -442.55 -2.12 -19.83 16 16 C 0.53 20.25 7.81 87.66 0.68 20.93 16 17 O -0.57 -27.52 15.52 -3.02 -0.05 -27.57 16 18 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 19 S -0.16 -8.85 20.57 -56.49 -1.16 -10.01 16 20 C -0.54 -31.33 9.50 67.95 0.65 -30.69 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.66 5.49 84.86 0.47 1.12 16 23 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.33 7.19 8.02 -89.70 -0.72 6.47 16 34 H 0.12 0.83 8.00 -2.39 -0.02 0.81 16 35 H 0.03 0.45 7.48 -2.39 -0.02 0.43 16 36 H 0.16 0.72 8.04 -2.91 -0.02 0.70 16 37 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.42 8.06 8.60 -92.71 -0.80 7.26 16 41 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 42 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 43 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -82.58 390.48 1.42 -81.17 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.47 Total: 20.13 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.78 Total: -6.71 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.70 Total: -102.81 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -82.58 1.42 -81.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.408 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds