Wall clock time and date at job start Tue Mar 31 2020 16:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28049 * 124.24243 * 2 1 4 4 C 1.34412 * 117.91744 * 179.97438 * 3 2 1 5 5 C 1.41250 * 129.48673 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63513 * 180.02562 * 5 4 3 7 7 C 1.40189 * 120.61711 * 0.02562 * 6 5 4 8 8 C 1.47595 * 120.12385 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99688 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00146 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99954 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46814 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47125 * 295.00091 * 12 11 10 14 14 C 1.53002 * 109.46634 * 175.00085 * 12 11 10 15 15 N 1.46502 * 109.47397 * 55.00062 * 12 11 10 16 16 C 1.46503 * 119.99982 * 59.99782 * 15 12 11 17 17 C 1.36934 * 120.00322 * 240.00058 * 15 12 11 18 18 H 1.08006 * 119.99675 * 38.94389 * 17 15 12 19 19 C 1.38813 * 120.00136 * 218.95338 * 17 15 12 20 20 N 1.31622 * 120.00068 * 26.48116 * 19 17 15 21 21 Si 1.86797 * 120.00021 * 206.20836 * 19 17 15 22 22 H 1.48504 * 109.47178 * 89.99500 * 21 19 17 23 23 H 1.48493 * 109.47324 * 209.99661 * 21 19 17 24 24 H 1.48503 * 109.47298 * 329.99971 * 21 19 17 25 25 C 1.39176 * 119.74887 * 0.22566 * 7 6 5 26 26 C 1.38908 * 119.84586 * 359.51682 * 25 7 6 27 27 S 1.70654 * 124.23781 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47225 * 90.02617 * 1 2 3 29 29 H 1.09003 * 109.47284 * 210.02214 * 1 2 3 30 30 H 1.08994 * 109.47072 * 330.02687 * 1 2 3 31 31 H 1.08003 * 119.68211 * 359.97438 * 5 4 3 32 32 H 1.08006 * 119.69007 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00335 * 359.97438 * 10 8 7 34 34 H 1.08992 * 109.46795 * 60.00214 * 11 10 8 35 35 H 1.09005 * 109.46889 * 299.99904 * 11 10 8 36 36 H 1.09003 * 109.47174 * 299.99545 * 14 12 11 37 37 H 1.08994 * 109.47600 * 60.00171 * 14 12 11 38 38 H 1.09010 * 109.46620 * 180.02562 * 14 12 11 39 39 H 1.09006 * 109.47148 * 275.29411 * 16 15 12 40 40 H 1.08999 * 109.46860 * 35.28925 * 16 15 12 41 41 H 1.08996 * 109.47041 * 155.29256 * 16 15 12 42 42 H 0.96996 * 119.99821 * 5.07656 * 20 19 17 43 43 H 1.08004 * 120.07758 * 179.72942 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0585 0.0000 4 6 3.5634 0.9105 0.0005 5 6 4.5763 1.8950 0.0011 6 6 5.8865 1.5396 0.0011 7 6 6.2597 0.1883 -0.0001 8 6 7.6874 -0.1858 -0.0007 9 8 8.0086 -1.3585 -0.0013 10 7 8.6352 0.7724 -0.0006 11 6 10.0524 0.4010 -0.0007 12 6 10.9113 1.6671 0.0001 13 1 10.7560 2.2121 -0.9310 14 6 12.3868 1.2822 0.1258 15 7 10.5298 2.5155 1.1319 16 6 10.6476 2.0071 2.5008 17 6 10.0630 3.7836 0.9104 18 1 9.4052 3.9788 0.0763 19 6 10.4355 4.8182 1.7576 20 7 11.5742 4.7533 2.4145 21 14 9.3242 6.3060 1.9596 22 1 8.3740 6.0663 3.0754 23 1 10.1495 7.5031 2.2609 24 1 8.5653 6.5313 0.7031 25 6 5.2788 -0.7990 -0.0060 26 6 3.9369 -0.4404 -0.0005 27 16 2.4671 -1.4108 0.0006 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3058 2.9406 0.0008 32 1 6.6484 2.3051 0.0012 33 1 8.3790 1.7080 -0.0005 34 1 10.2735 -0.1880 -0.8907 35 1 10.2735 -0.1882 0.8893 36 1 12.5421 0.7373 1.0569 37 1 12.6707 0.6511 -0.7163 38 1 12.9987 2.1843 0.1268 39 1 9.7535 1.4377 2.7552 40 1 11.5227 1.3615 2.5745 41 1 10.7541 2.8438 3.1912 42 1 12.1870 4.0194 2.2515 43 1 5.5604 -1.8417 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700481238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:48 Heat of formation + Delta-G solvation = 35.100074 kcal Electronic energy + Delta-G solvation = -25754.495871 eV Core-core repulsion = 22119.628540 eV Total energy + Delta-G solvation = -3634.867331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.74697 -39.41818 -37.18326 -36.63537 -34.07383 -32.39237 -31.73131 -31.30096 -29.47578 -28.73143 -26.15255 -25.80693 -24.44012 -23.15659 -22.64665 -21.50512 -20.17426 -19.62226 -18.74952 -17.61252 -17.27671 -16.25502 -15.99039 -15.48209 -15.25048 -15.18158 -14.45882 -14.30368 -14.12872 -13.89205 -13.63862 -13.54605 -13.37143 -13.29119 -13.00728 -12.59787 -12.50740 -12.37938 -12.23567 -11.57582 -11.46272 -11.26804 -11.07710 -10.92300 -10.76707 -10.61144 -10.40230 -10.23787 -10.11601 -9.92248 -9.78781 -9.45801 -8.90795 -8.64014 -8.42956 -8.32371 -6.90524 -6.13629 -3.50163 -0.04957 0.93401 0.97751 1.42074 1.81897 2.99861 3.43591 3.44480 3.45479 3.56268 3.60596 3.74057 4.36063 4.48285 4.64756 4.79723 4.90480 4.97086 5.02070 5.06681 5.18643 5.27439 5.30976 5.46284 5.50525 5.63552 5.82114 5.87980 5.97456 6.01093 6.07626 6.10336 6.21627 6.28774 6.40216 6.54590 6.68151 6.76655 6.78492 6.94346 7.16083 7.33660 7.86765 7.97158 8.44474 8.50608 9.03473 9.70519 10.19160 11.05928 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003119 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.245342 B = 8974.555075 C =10641.599270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 N -0.470 5.470 4 C 0.103 3.897 5 C -0.069 4.069 6 C -0.071 4.071 7 C -0.110 4.110 8 C 0.553 3.447 9 O -0.552 6.552 10 N -0.696 5.696 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.071 0.929 14 C -0.158 4.158 15 N -0.591 5.591 16 C 0.118 3.882 17 C -0.365 4.365 18 H 0.051 0.949 19 C -0.012 4.012 20 N -0.899 5.899 21 Si 1.063 2.937 22 H -0.291 1.291 23 H -0.290 1.290 24 H -0.290 1.290 25 C -0.010 4.010 26 C -0.195 4.195 27 S 0.104 5.896 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.411 0.589 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.059 0.941 39 H -0.001 1.001 40 H 0.019 0.981 41 H 0.065 0.935 42 H 0.271 0.729 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -10.157 -5.796 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 N -0.184 5.184 4 C -0.018 4.018 5 C -0.090 4.090 6 C -0.093 4.093 7 C -0.117 4.117 8 C 0.339 3.661 9 O -0.432 6.432 10 N -0.347 5.347 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.089 0.911 14 C -0.218 4.218 15 N -0.315 5.315 16 C -0.027 4.027 17 C -0.494 4.494 18 H 0.069 0.931 19 C -0.217 4.217 20 N -0.536 5.536 21 Si 0.893 3.107 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.216 1.216 25 C -0.033 4.033 26 C -0.313 4.313 27 S 0.359 5.641 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.017 0.983 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.062 -10.059 -4.965 21.262 hybrid contribution 0.817 -0.284 -0.750 1.145 sum -17.245 -10.343 -5.715 20.905 Atomic orbital electron populations 1.20580 0.84725 1.04657 1.04345 1.26827 1.01882 0.90931 0.99601 1.66140 1.04200 1.31282 1.16802 1.19313 0.89062 0.91721 1.01708 1.20317 0.90092 0.98834 0.99759 1.21013 0.96388 0.95528 0.96352 1.19975 0.93609 0.93596 1.04520 1.18006 0.85056 0.85738 0.77275 1.90745 1.82927 1.18165 1.51357 1.45832 1.06404 1.10154 1.72280 1.21973 0.79837 0.98923 1.00903 1.20793 0.91256 0.90159 0.93384 0.91094 1.22169 0.98122 1.01131 1.00386 1.43909 1.75477 1.12457 0.99640 1.21049 0.95865 0.97936 0.87880 1.19805 1.26665 0.85160 1.17798 0.93140 1.25976 0.97478 1.00143 0.98125 1.70738 1.06255 1.32272 1.44338 0.83546 0.75331 0.75890 0.75932 1.21841 1.21586 1.21608 1.20377 0.88098 1.00406 0.94413 1.23694 0.98700 0.96674 1.12261 1.83919 0.95516 1.10366 1.74256 0.89062 0.89659 0.88855 0.83958 0.83600 0.75159 0.92239 0.92133 0.93210 0.93749 0.92206 0.98269 0.96245 0.91675 0.91789 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.00 0.38 -0.10 16 2 C 0.09 0.93 7.29 -13.86 -0.10 0.83 16 3 N -0.47 -6.11 10.56 -8.96 -0.09 -6.20 16 4 C 0.10 1.42 7.00 -84.87 -0.59 0.82 16 5 C -0.07 -0.90 10.03 -39.33 -0.39 -1.30 16 6 C -0.07 -0.96 9.44 -39.74 -0.38 -1.34 16 7 C -0.11 -1.64 5.87 -105.00 -0.62 -2.26 16 8 C 0.55 9.52 7.76 -12.45 -0.10 9.43 16 9 O -0.55 -10.87 16.34 5.29 0.09 -10.79 16 10 N -0.70 -11.93 5.34 -61.33 -0.33 -12.25 16 11 C 0.11 1.91 4.97 -4.04 -0.02 1.89 16 12 C 0.15 2.89 2.88 -67.93 -0.20 2.69 16 13 H 0.07 1.38 7.89 -51.93 -0.41 0.97 16 14 C -0.16 -2.77 9.16 37.16 0.34 -2.43 16 15 N -0.59 -13.27 1.93 -173.48 -0.34 -13.61 16 16 C 0.12 2.65 8.98 59.85 0.54 3.19 16 17 C -0.37 -9.13 9.00 -15.06 -0.14 -9.26 16 18 H 0.05 1.25 7.95 -52.48 -0.42 0.83 16 19 C -0.01 -0.32 4.73 -17.43 -0.08 -0.40 16 20 N -0.90 -25.46 12.35 55.49 0.69 -24.78 16 21 Si 1.06 23.71 29.99 -169.99 -5.10 18.61 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.01 -0.14 9.62 -38.99 -0.37 -0.51 16 26 C -0.19 -2.57 6.54 -38.62 -0.25 -2.82 16 27 S 0.10 1.04 23.11 -107.50 -2.48 -1.44 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.15 1.88 6.38 -52.48 -0.33 1.54 16 33 H 0.41 7.00 5.91 -40.82 -0.24 6.76 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.13 7.84 -51.93 -0.41 0.72 16 36 H 0.05 0.87 6.70 -51.93 -0.35 0.52 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 39 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 40 H 0.02 0.40 6.45 -51.93 -0.33 0.07 16 41 H 0.06 1.64 5.83 -51.93 -0.30 1.34 16 42 H 0.27 7.76 7.40 -40.82 -0.30 7.46 16 43 H 0.14 1.93 7.64 -52.48 -0.40 1.53 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -30.76 369.69 -9.66 -40.42 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.68 Total: 6.05 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.99 Total: -1.58 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.07 Total: -56.84 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.10 Total: 18.61 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.76 -9.66 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700481238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.521 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds