Wall clock time and date at job start Tue Mar 31 2020 16:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28049 * 124.24243 * 2 1 4 4 C 1.34412 * 117.91744 * 179.97438 * 3 2 1 5 5 C 1.41250 * 129.48673 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63513 * 180.02562 * 5 4 3 7 7 C 1.40189 * 120.61711 * 0.02562 * 6 5 4 8 8 C 1.47595 * 120.12385 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99688 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00146 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99954 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46814 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47125 * 295.00091 * 12 11 10 14 14 C 1.53002 * 109.46634 * 175.00085 * 12 11 10 15 15 N 1.46502 * 109.47397 * 55.00062 * 12 11 10 16 16 C 1.46503 * 119.99982 * 59.99782 * 15 12 11 17 17 C 1.36934 * 120.00322 * 240.00058 * 15 12 11 18 18 H 1.08006 * 119.99675 * 38.94389 * 17 15 12 19 19 C 1.38813 * 120.00136 * 218.95338 * 17 15 12 20 20 N 1.31622 * 120.00068 * 26.48116 * 19 17 15 21 21 Si 1.86797 * 120.00021 * 206.20836 * 19 17 15 22 22 H 1.48504 * 109.47178 * 89.99500 * 21 19 17 23 23 H 1.48493 * 109.47324 * 209.99661 * 21 19 17 24 24 H 1.48503 * 109.47298 * 329.99971 * 21 19 17 25 25 C 1.39176 * 119.74887 * 0.22566 * 7 6 5 26 26 C 1.38908 * 119.84586 * 359.51682 * 25 7 6 27 27 S 1.70654 * 124.23781 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47225 * 90.02617 * 1 2 3 29 29 H 1.09003 * 109.47284 * 210.02214 * 1 2 3 30 30 H 1.08994 * 109.47072 * 330.02687 * 1 2 3 31 31 H 1.08003 * 119.68211 * 359.97438 * 5 4 3 32 32 H 1.08006 * 119.69007 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00335 * 359.97438 * 10 8 7 34 34 H 1.08992 * 109.46795 * 60.00214 * 11 10 8 35 35 H 1.09005 * 109.46889 * 299.99904 * 11 10 8 36 36 H 1.09003 * 109.47174 * 299.99545 * 14 12 11 37 37 H 1.08994 * 109.47600 * 60.00171 * 14 12 11 38 38 H 1.09010 * 109.46620 * 180.02562 * 14 12 11 39 39 H 1.09006 * 109.47148 * 275.29411 * 16 15 12 40 40 H 1.08999 * 109.46860 * 35.28925 * 16 15 12 41 41 H 1.08996 * 109.47041 * 155.29256 * 16 15 12 42 42 H 0.96996 * 119.99821 * 5.07656 * 20 19 17 43 43 H 1.08004 * 120.07758 * 179.72942 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0585 0.0000 4 6 3.5634 0.9105 0.0005 5 6 4.5763 1.8950 0.0011 6 6 5.8865 1.5396 0.0011 7 6 6.2597 0.1883 -0.0001 8 6 7.6874 -0.1858 -0.0007 9 8 8.0086 -1.3585 -0.0013 10 7 8.6352 0.7724 -0.0006 11 6 10.0524 0.4010 -0.0007 12 6 10.9113 1.6671 0.0001 13 1 10.7560 2.2121 -0.9310 14 6 12.3868 1.2822 0.1258 15 7 10.5298 2.5155 1.1319 16 6 10.6476 2.0071 2.5008 17 6 10.0630 3.7836 0.9104 18 1 9.4052 3.9788 0.0763 19 6 10.4355 4.8182 1.7576 20 7 11.5742 4.7533 2.4145 21 14 9.3242 6.3060 1.9596 22 1 8.3740 6.0663 3.0754 23 1 10.1495 7.5031 2.2609 24 1 8.5653 6.5313 0.7031 25 6 5.2788 -0.7990 -0.0060 26 6 3.9369 -0.4404 -0.0005 27 16 2.4671 -1.4108 0.0006 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3058 2.9406 0.0008 32 1 6.6484 2.3051 0.0012 33 1 8.3790 1.7080 -0.0005 34 1 10.2735 -0.1880 -0.8907 35 1 10.2735 -0.1882 0.8893 36 1 12.5421 0.7373 1.0569 37 1 12.6707 0.6511 -0.7163 38 1 12.9987 2.1843 0.1268 39 1 9.7535 1.4377 2.7552 40 1 11.5227 1.3615 2.5745 41 1 10.7541 2.8438 3.1912 42 1 12.1870 4.0194 2.2515 43 1 5.5604 -1.8417 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700481238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:44 Heat of formation + Delta-G solvation = 17.148762 kcal Electronic energy + Delta-G solvation = -25755.274298 eV Core-core repulsion = 22119.628540 eV Total energy + Delta-G solvation = -3635.645758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -41.78232 -40.67379 -38.65984 -37.83616 -35.67398 -33.92995 -32.67060 -32.33956 -31.17946 -29.69943 -28.01567 -27.15255 -25.38126 -24.78506 -23.95562 -22.46670 -21.37199 -21.19104 -19.80960 -19.32412 -18.57051 -17.47706 -16.98659 -16.92316 -16.34698 -16.32062 -15.91949 -15.77868 -15.51726 -15.33841 -15.09604 -14.60331 -14.40973 -14.24209 -14.15239 -13.90912 -13.77454 -13.54735 -13.12511 -13.04056 -12.88235 -12.80536 -12.49577 -12.44017 -12.39752 -12.03437 -11.87944 -11.80201 -11.34629 -11.32220 -11.17912 -10.78170 -10.40817 -10.15833 -9.74899 -9.26923 -8.84243 -8.12703 -5.50192 -1.02219 -0.04163 0.07359 0.54693 0.81795 1.63876 1.69142 1.83741 1.85163 2.14360 2.61009 2.67558 2.76510 3.26592 3.40979 3.51352 3.60433 3.82239 3.94882 3.95598 4.02753 4.23869 4.30428 4.51705 4.55768 4.59594 4.64949 4.65222 4.68806 4.75148 4.84990 4.91978 4.96382 4.97928 5.05975 5.13077 5.18916 5.20635 5.32943 5.40178 5.50565 5.99556 6.44552 6.45753 6.50341 7.07967 7.15004 7.77918 8.27106 9.01776 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003119 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.245342 B = 8974.555075 C =10641.599270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.100 3.900 3 N -0.503 5.503 4 C 0.097 3.903 5 C -0.076 4.076 6 C -0.069 4.069 7 C -0.131 4.131 8 C 0.556 3.444 9 O -0.581 6.581 10 N -0.697 5.697 11 C 0.119 3.881 12 C 0.153 3.847 13 H 0.069 0.931 14 C -0.150 4.150 15 N -0.600 5.600 16 C 0.129 3.871 17 C -0.357 4.357 18 H 0.056 0.944 19 C -0.063 4.063 20 N -0.932 5.932 21 Si 1.107 2.893 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.265 1.265 25 C -0.007 4.007 26 C -0.221 4.221 27 S 0.149 5.851 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.411 0.589 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.002 0.998 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.257 0.743 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -10.886 -6.746 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.183 4.183 3 N -0.218 5.218 4 C -0.024 4.024 5 C -0.096 4.096 6 C -0.090 4.090 7 C -0.137 4.137 8 C 0.343 3.657 9 O -0.464 6.464 10 N -0.347 5.347 11 C -0.007 4.007 12 C 0.046 3.954 13 H 0.087 0.913 14 C -0.210 4.210 15 N -0.324 5.324 16 C -0.017 4.017 17 C -0.486 4.486 18 H 0.074 0.926 19 C -0.262 4.262 20 N -0.572 5.572 21 Si 0.933 3.067 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.190 1.190 25 C -0.030 4.030 26 C -0.339 4.339 27 S 0.405 5.595 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.724 -10.818 -5.944 24.121 hybrid contribution 1.471 -0.192 -0.503 1.567 sum -19.252 -11.010 -6.447 23.096 Atomic orbital electron populations 1.20857 0.81518 1.06130 1.06005 1.27696 1.03682 0.90434 0.96513 1.66240 1.03824 1.32521 1.19213 1.19590 0.89834 0.92056 1.00968 1.20483 0.89809 0.99648 0.99678 1.20991 0.96791 0.94941 0.96322 1.19803 0.92349 0.94532 1.07045 1.18293 0.85922 0.85171 0.76267 1.90718 1.83549 1.19217 1.52883 1.45826 1.06321 1.10220 1.72310 1.21809 0.79881 0.97847 1.01119 1.20869 0.92512 0.90156 0.91841 0.91310 1.22056 0.96454 1.00682 1.01773 1.44016 1.75800 1.12193 1.00413 1.20871 0.96451 0.96850 0.87523 1.20060 1.25603 0.85865 1.17122 0.92645 1.27132 0.97870 1.02723 0.98486 1.70859 1.07426 1.32496 1.46380 0.82951 0.73984 0.72785 0.76975 1.21436 1.22861 1.18973 1.20395 0.88527 1.00192 0.93888 1.23936 0.99537 0.97663 1.12811 1.83767 0.93260 1.09248 1.73189 0.87078 0.87146 0.88370 0.82511 0.83316 0.75101 0.90688 0.93194 0.93318 0.90491 0.94286 0.98007 0.95061 0.94568 0.93361 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.44 71.24 0.74 0.06 16 2 C 0.10 1.76 7.29 88.66 0.65 2.41 16 3 N -0.50 -12.19 10.56 -182.20 -1.92 -14.12 16 4 C 0.10 2.57 7.00 39.95 0.28 2.85 16 5 C -0.08 -1.92 10.03 22.43 0.23 -1.69 16 6 C -0.07 -1.84 9.44 22.17 0.21 -1.63 16 7 C -0.13 -3.89 5.87 -20.11 -0.12 -4.01 16 8 C 0.56 19.11 7.76 86.71 0.67 19.79 16 9 O -0.58 -22.94 16.34 -3.99 -0.07 -23.01 16 10 N -0.70 -23.60 5.34 -466.21 -2.49 -26.09 16 11 C 0.12 4.06 4.97 86.38 0.43 4.49 16 12 C 0.15 5.70 2.88 44.99 0.13 5.83 16 13 H 0.07 2.60 7.89 -2.39 -0.02 2.58 16 14 C -0.15 -5.11 9.16 71.98 0.66 -4.45 16 15 N -0.60 -26.93 1.93 -702.77 -1.36 -28.29 16 16 C 0.13 5.84 8.98 127.77 1.15 6.99 16 17 C -0.36 -17.76 9.00 84.03 0.76 -17.00 16 18 H 0.06 2.68 7.95 -2.91 -0.02 2.66 16 19 C -0.06 -3.33 4.73 84.86 0.40 -2.93 16 20 N -0.93 -53.92 12.35 21.65 0.27 -53.66 16 21 Si 1.11 47.81 29.99 68.60 2.06 49.87 16 22 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 25 C -0.01 -0.19 9.62 22.66 0.22 0.02 16 26 C -0.22 -5.61 6.54 22.90 0.15 -5.46 16 27 S 0.15 2.66 23.11 -56.49 -1.31 1.35 16 28 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.15 3.78 6.38 -2.91 -0.02 3.76 16 33 H 0.41 13.85 5.91 -92.71 -0.55 13.30 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16 36 H 0.05 1.65 6.70 -2.39 -0.02 1.64 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 40 H 0.03 1.31 6.45 -2.39 -0.02 1.30 16 41 H 0.04 1.86 5.83 -2.39 -0.01 1.85 16 42 H 0.26 15.13 7.40 -92.71 -0.69 14.45 16 43 H 0.14 3.85 7.64 -2.91 -0.02 3.83 16 Total: -1.00 -66.71 369.69 2.31 -64.40 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.58 Total: 24.27 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.55 Total: 5.28 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.50 Total: -122.16 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.06 Total: 49.87 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.35 kcal Total: -66.71 2.31 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700481238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.547 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds