Wall clock time and date at job start Tue Mar 31 2020 16:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28056 * 124.24502 * 2 1 4 4 C 1.34412 * 117.91937 * 180.02562 * 3 2 1 5 5 C 1.41252 * 129.48348 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63217 * 179.97438 * 5 4 3 7 7 C 1.40186 * 120.61891 * 0.23440 * 6 5 4 8 8 C 1.47588 * 120.12694 * 179.73945 * 7 6 5 9 9 O 1.21592 * 120.00072 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00025 * 359.97438 * 8 7 6 11 11 C 1.46501 * 119.99777 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46635 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.47184 * 65.00738 * 12 11 10 14 14 C 1.53005 * 109.46954 * 185.00181 * 12 11 10 15 15 N 1.46505 * 109.47679 * 305.00360 * 12 11 10 16 16 C 1.46500 * 119.99685 * 300.00415 * 15 12 11 17 17 C 1.36931 * 120.00220 * 119.99620 * 15 12 11 18 18 H 1.08004 * 119.99743 * 23.10968 * 17 15 12 19 19 C 1.38810 * 120.00124 * 203.10312 * 17 15 12 20 20 N 1.31610 * 119.99994 * 11.71163 * 19 17 15 21 21 Si 1.86802 * 120.00086 * 191.70416 * 19 17 15 22 22 H 1.48505 * 109.47028 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46898 * 120.00284 * 21 19 17 24 24 H 1.48499 * 109.47279 * 240.00610 * 21 19 17 25 25 C 1.39177 * 119.74692 * 359.51201 * 7 6 5 26 26 C 1.38915 * 119.84833 * 0.48423 * 25 7 6 27 27 S 1.70649 * 124.24274 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47444 * 90.03153 * 1 2 3 29 29 H 1.09008 * 109.47194 * 210.03031 * 1 2 3 30 30 H 1.09001 * 109.47378 * 330.02741 * 1 2 3 31 31 H 1.08002 * 119.68042 * 359.97163 * 5 4 3 32 32 H 1.07998 * 119.68456 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99456 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47351 * 300.00242 * 11 10 8 35 35 H 1.08998 * 109.47057 * 60.01050 * 11 10 8 36 36 H 1.08996 * 109.47272 * 60.00370 * 14 12 11 37 37 H 1.09007 * 109.46819 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47274 * 299.99917 * 14 12 11 39 39 H 1.08999 * 109.47348 * 93.93036 * 16 15 12 40 40 H 1.09000 * 109.47112 * 213.93179 * 16 15 12 41 41 H 1.09004 * 109.46814 * 333.92628 * 16 15 12 42 42 H 0.97000 * 120.00199 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.07679 * 180.25627 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9105 -0.0005 5 6 4.5762 1.8951 -0.0002 6 6 5.8864 1.5397 -0.0003 7 6 6.2597 0.1884 -0.0058 8 6 7.6873 -0.1857 -0.0117 9 8 8.0085 -1.3584 -0.0169 10 7 8.6351 0.7726 -0.0124 11 6 10.0523 0.4011 -0.0176 12 6 10.9112 1.6673 -0.0167 13 1 10.7587 2.2091 0.9168 14 6 12.3864 1.2829 -0.1480 15 7 10.5264 2.5195 -1.1445 16 6 10.6402 2.0156 -2.5155 17 6 10.0603 3.7868 -0.9173 18 1 10.3113 4.2980 0.0004 19 6 9.2653 4.4145 -1.8664 20 7 8.7690 3.7232 -2.8703 21 14 8.8998 6.2404 -1.7187 22 1 9.5712 6.7835 -0.5105 23 1 9.4049 6.9454 -2.9241 24 1 7.4333 6.4440 -1.6042 25 6 5.2788 -0.7990 -0.0008 26 6 3.9368 -0.4404 -0.0006 27 16 2.4671 -1.4107 0.0006 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.3056 2.9406 0.0002 32 1 6.6482 2.3052 -0.0005 33 1 8.3789 1.7081 -0.0086 34 1 10.2763 -0.1902 0.8702 35 1 10.2707 -0.1857 -0.9098 36 1 12.5390 0.7411 -1.0813 37 1 12.9984 2.1849 -0.1468 38 1 12.6727 0.6489 0.6912 39 1 9.6860 1.5902 -2.8266 40 1 10.9075 2.8350 -3.1827 41 1 11.4117 1.2468 -2.5571 42 1 8.2132 4.1617 -3.5334 43 1 5.5604 -1.8417 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700481239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:54 Heat of formation + Delta-G solvation = 41.460060 kcal Electronic energy + Delta-G solvation = -26028.749395 eV Core-core repulsion = 22394.157854 eV Total energy + Delta-G solvation = -3634.591541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.57324 -39.22526 -37.02100 -36.45523 -33.79093 -32.29988 -31.64000 -31.11667 -29.43254 -28.58837 -26.07635 -25.73040 -24.27695 -23.24666 -22.61119 -21.33579 -19.97290 -19.43417 -18.57571 -17.27832 -16.95506 -16.08497 -15.82018 -15.35811 -15.24402 -15.00043 -14.62305 -14.08100 -13.95808 -13.91995 -13.49457 -13.26865 -13.11524 -12.85121 -12.83161 -12.44930 -12.35445 -12.24079 -12.10765 -11.66693 -11.37966 -11.12906 -10.90866 -10.85752 -10.73916 -10.44542 -10.31748 -10.23751 -9.91444 -9.82590 -9.78487 -9.59420 -8.72974 -8.65146 -8.41943 -8.15256 -6.86240 -5.81091 -3.29769 0.11526 1.07663 1.16839 1.55999 1.98665 3.18370 3.30329 3.39898 3.40527 3.65824 3.70944 3.94657 4.39757 4.52212 4.79704 5.00375 5.02704 5.12328 5.17787 5.23883 5.31569 5.35450 5.44902 5.56201 5.61239 5.81450 5.91204 6.03315 6.05568 6.10938 6.19738 6.31007 6.33758 6.36441 6.60115 6.66287 6.77332 6.86424 7.04983 7.35974 7.48334 7.68858 7.74772 8.10538 8.29894 8.67870 9.14262 9.77079 10.27144 11.21541 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003488 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.629622 B = 8026.054309 C = 9717.013674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.089 3.911 3 N -0.469 5.469 4 C 0.101 3.899 5 C -0.070 4.070 6 C -0.064 4.064 7 C -0.106 4.106 8 C 0.554 3.446 9 O -0.557 6.557 10 N -0.690 5.690 11 C 0.107 3.893 12 C 0.157 3.843 13 H 0.069 0.931 14 C -0.158 4.158 15 N -0.594 5.594 16 C 0.162 3.838 17 C -0.263 4.263 18 H 0.068 0.932 19 C 0.007 3.993 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C -0.013 4.013 26 C -0.194 4.194 27 S 0.098 5.902 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.029 0.971 40 H 0.042 0.958 41 H -0.002 1.002 42 H 0.253 0.747 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 -8.074 6.589 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 N -0.183 5.183 4 C -0.019 4.019 5 C -0.091 4.091 6 C -0.085 4.085 7 C -0.113 4.113 8 C 0.341 3.659 9 O -0.438 6.438 10 N -0.341 5.341 11 C -0.019 4.019 12 C 0.048 3.952 13 H 0.087 0.913 14 C -0.218 4.218 15 N -0.318 5.318 16 C 0.018 3.982 17 C -0.393 4.393 18 H 0.086 0.914 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.036 4.036 26 C -0.312 4.312 27 S 0.353 5.647 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.254 0.746 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.793 -9.342 6.427 16.361 hybrid contribution 0.263 2.221 -0.263 2.251 sum -11.531 -7.122 6.165 14.889 Atomic orbital electron populations 1.20560 0.84853 1.04495 1.04298 1.26784 1.01790 0.90950 0.99983 1.66128 1.04298 1.31281 1.16639 1.19299 0.88972 0.91763 1.01915 1.20305 0.90153 0.98709 0.99891 1.21055 0.96403 0.95644 0.95426 1.19988 0.93692 0.93549 1.04025 1.17963 0.85070 0.85687 0.77229 1.90726 1.82974 1.18236 1.51863 1.45774 1.06137 1.10435 1.71713 1.22001 0.80356 0.98859 1.00711 1.20665 0.91763 0.89936 0.92800 0.91272 1.22168 0.97812 1.01052 1.00733 1.43953 1.75321 1.12308 1.00171 1.20762 0.96523 0.95735 0.85181 1.19259 1.25034 0.90176 1.04792 0.91406 1.25003 0.97641 0.98093 0.98447 1.70080 1.35459 1.33973 1.14816 0.86289 0.77687 0.85639 0.77530 1.20366 1.21696 1.21649 1.20362 0.88096 1.00346 0.94813 1.23651 0.98622 0.96557 1.12375 1.83841 0.95709 1.10497 1.74618 0.89129 0.89750 0.88968 0.84168 0.83361 0.74646 0.92602 0.92149 0.92918 0.92396 0.93535 0.95284 0.93902 0.98309 0.93694 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.44 36.00 0.38 -0.19 16 2 C 0.09 1.02 7.29 -13.86 -0.10 0.92 16 3 N -0.47 -6.83 10.56 -8.96 -0.09 -6.93 16 4 C 0.10 1.57 7.00 -84.88 -0.59 0.98 16 5 C -0.07 -1.07 10.03 -39.33 -0.39 -1.46 16 6 C -0.06 -1.03 9.44 -39.74 -0.38 -1.40 16 7 C -0.11 -1.79 5.87 -105.00 -0.62 -2.41 16 8 C 0.55 10.51 7.76 -12.44 -0.10 10.41 16 9 O -0.56 -11.74 16.34 5.28 0.09 -11.66 16 10 N -0.69 -12.95 5.34 -61.33 -0.33 -13.28 16 11 C 0.11 1.94 4.97 -4.04 -0.02 1.92 16 12 C 0.16 2.90 2.87 -67.93 -0.19 2.70 16 13 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 14 C -0.16 -2.53 9.18 37.16 0.34 -2.19 16 15 N -0.59 -13.28 2.29 -173.48 -0.40 -13.68 16 16 C 0.16 3.78 8.11 59.85 0.49 4.26 16 17 C -0.26 -6.43 9.32 -15.06 -0.14 -6.57 16 18 H 0.07 1.64 7.82 -52.48 -0.41 1.23 16 19 C 0.01 0.19 5.12 -17.44 -0.09 0.10 16 20 N -0.90 -23.95 10.65 55.49 0.59 -23.36 16 21 Si 0.90 20.32 29.57 -169.99 -5.03 15.30 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.01 -0.20 9.62 -38.98 -0.37 -0.58 16 26 C -0.19 -2.87 6.54 -38.62 -0.25 -3.13 16 27 S 0.10 1.12 23.11 -107.50 -2.48 -1.37 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.15 2.41 6.38 -52.49 -0.33 2.07 16 33 H 0.41 8.02 5.91 -40.82 -0.24 7.78 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 36 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.74 7.41 -51.93 -0.39 0.36 16 40 H 0.04 1.08 7.23 -51.93 -0.38 0.71 16 41 H 0.00 -0.03 6.43 -51.93 -0.33 -0.37 16 42 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.14 2.13 7.64 -52.48 -0.40 1.73 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -29.54 369.13 -9.87 -39.42 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.74 Total: 6.62 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.05 Total: 3.37 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.23 Total: -57.24 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.54 -9.87 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700481239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.878 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds