Wall clock time and date at job start Tue Mar 31 2020 16:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28056 * 124.24502 * 2 1 4 4 C 1.34412 * 117.91937 * 180.02562 * 3 2 1 5 5 C 1.41252 * 129.48348 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63217 * 179.97438 * 5 4 3 7 7 C 1.40186 * 120.61891 * 0.23440 * 6 5 4 8 8 C 1.47588 * 120.12694 * 179.73945 * 7 6 5 9 9 O 1.21592 * 120.00072 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00025 * 359.97438 * 8 7 6 11 11 C 1.46501 * 119.99777 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46635 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.47184 * 65.00738 * 12 11 10 14 14 C 1.53005 * 109.46954 * 185.00181 * 12 11 10 15 15 N 1.46505 * 109.47679 * 305.00360 * 12 11 10 16 16 C 1.46500 * 119.99685 * 300.00415 * 15 12 11 17 17 C 1.36931 * 120.00220 * 119.99620 * 15 12 11 18 18 H 1.08004 * 119.99743 * 23.10968 * 17 15 12 19 19 C 1.38810 * 120.00124 * 203.10312 * 17 15 12 20 20 N 1.31610 * 119.99994 * 11.71163 * 19 17 15 21 21 Si 1.86802 * 120.00086 * 191.70416 * 19 17 15 22 22 H 1.48505 * 109.47028 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46898 * 120.00284 * 21 19 17 24 24 H 1.48499 * 109.47279 * 240.00610 * 21 19 17 25 25 C 1.39177 * 119.74692 * 359.51201 * 7 6 5 26 26 C 1.38915 * 119.84833 * 0.48423 * 25 7 6 27 27 S 1.70649 * 124.24274 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47444 * 90.03153 * 1 2 3 29 29 H 1.09008 * 109.47194 * 210.03031 * 1 2 3 30 30 H 1.09001 * 109.47378 * 330.02741 * 1 2 3 31 31 H 1.08002 * 119.68042 * 359.97163 * 5 4 3 32 32 H 1.07998 * 119.68456 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99456 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47351 * 300.00242 * 11 10 8 35 35 H 1.08998 * 109.47057 * 60.01050 * 11 10 8 36 36 H 1.08996 * 109.47272 * 60.00370 * 14 12 11 37 37 H 1.09007 * 109.46819 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47274 * 299.99917 * 14 12 11 39 39 H 1.08999 * 109.47348 * 93.93036 * 16 15 12 40 40 H 1.09000 * 109.47112 * 213.93179 * 16 15 12 41 41 H 1.09004 * 109.46814 * 333.92628 * 16 15 12 42 42 H 0.97000 * 120.00199 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.07679 * 180.25627 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9105 -0.0005 5 6 4.5762 1.8951 -0.0002 6 6 5.8864 1.5397 -0.0003 7 6 6.2597 0.1884 -0.0058 8 6 7.6873 -0.1857 -0.0117 9 8 8.0085 -1.3584 -0.0169 10 7 8.6351 0.7726 -0.0124 11 6 10.0523 0.4011 -0.0176 12 6 10.9112 1.6673 -0.0167 13 1 10.7587 2.2091 0.9168 14 6 12.3864 1.2829 -0.1480 15 7 10.5264 2.5195 -1.1445 16 6 10.6402 2.0156 -2.5155 17 6 10.0603 3.7868 -0.9173 18 1 10.3113 4.2980 0.0004 19 6 9.2653 4.4145 -1.8664 20 7 8.7690 3.7232 -2.8703 21 14 8.8998 6.2404 -1.7187 22 1 9.5712 6.7835 -0.5105 23 1 9.4049 6.9454 -2.9241 24 1 7.4333 6.4440 -1.6042 25 6 5.2788 -0.7990 -0.0008 26 6 3.9368 -0.4404 -0.0006 27 16 2.4671 -1.4107 0.0006 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.3056 2.9406 0.0002 32 1 6.6482 2.3052 -0.0005 33 1 8.3789 1.7081 -0.0086 34 1 10.2763 -0.1902 0.8702 35 1 10.2707 -0.1857 -0.9098 36 1 12.5390 0.7411 -1.0813 37 1 12.9984 2.1849 -0.1468 38 1 12.6727 0.6489 0.6912 39 1 9.6860 1.5902 -2.8266 40 1 10.9075 2.8350 -3.1827 41 1 11.4117 1.2468 -2.5571 42 1 8.2132 4.1617 -3.5334 43 1 5.5604 -1.8417 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700481239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:53 Heat of formation + Delta-G solvation = 24.399362 kcal Electronic energy + Delta-G solvation = -26029.489202 eV Core-core repulsion = 22394.157854 eV Total energy + Delta-G solvation = -3635.331349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75209 -40.60586 -38.50289 -37.79154 -35.44315 -33.88497 -32.66642 -32.32405 -31.10918 -29.66065 -27.98053 -27.07691 -25.36434 -24.94384 -23.93121 -22.43765 -21.29330 -21.00463 -19.72921 -18.82484 -18.54366 -17.43521 -17.09345 -16.92202 -16.39322 -16.28112 -16.13008 -15.61818 -15.43015 -15.09660 -14.67415 -14.46158 -14.39370 -14.20984 -14.08272 -13.82554 -13.67161 -13.48447 -13.20088 -13.11317 -12.83239 -12.60728 -12.48281 -12.44470 -12.25846 -12.05620 -12.01548 -11.72540 -11.45644 -11.33663 -11.11352 -10.77536 -10.59315 -10.06652 -9.71124 -9.24809 -8.74239 -7.75005 -5.24269 -1.00302 -0.02887 0.08325 0.54899 0.84428 1.48681 1.54164 1.60742 1.87149 2.25331 2.54411 2.64186 2.77161 3.39020 3.41523 3.61911 3.70619 3.84323 3.97374 4.02209 4.08473 4.26909 4.41318 4.56497 4.62916 4.65224 4.65565 4.72677 4.81942 4.86306 4.87149 4.99385 5.08617 5.11228 5.13394 5.29293 5.33123 5.39902 5.47396 5.61141 5.73026 5.77929 6.38211 6.46661 6.58975 7.17213 7.21226 7.92135 8.38198 9.26163 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003488 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.629622 B = 8026.054309 C = 9717.013674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.099 3.901 3 N -0.504 5.504 4 C 0.097 3.903 5 C -0.079 4.079 6 C -0.064 4.064 7 C -0.129 4.129 8 C 0.554 3.446 9 O -0.583 6.583 10 N -0.693 5.693 11 C 0.112 3.888 12 C 0.156 3.844 13 H 0.076 0.924 14 C -0.149 4.149 15 N -0.602 5.602 16 C 0.181 3.819 17 C -0.258 4.258 18 H 0.074 0.926 19 C -0.037 4.037 20 N -0.926 5.926 21 Si 0.953 3.047 22 H -0.268 1.268 23 H -0.302 1.302 24 H -0.293 1.293 25 C -0.007 4.007 26 C -0.221 4.221 27 S 0.154 5.846 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.077 0.923 39 H -0.001 1.001 40 H 0.015 0.985 41 H 0.023 0.977 42 H 0.244 0.756 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.775 -8.814 7.846 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.184 4.184 3 N -0.220 5.220 4 C -0.024 4.024 5 C -0.100 4.100 6 C -0.086 4.086 7 C -0.136 4.136 8 C 0.342 3.658 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.014 4.014 12 C 0.048 3.952 13 H 0.094 0.906 14 C -0.208 4.208 15 N -0.325 5.325 16 C 0.036 3.964 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.233 4.233 20 N -0.573 5.573 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.230 1.230 24 H -0.220 1.220 25 C -0.030 4.030 26 C -0.339 4.339 27 S 0.411 5.589 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.017 0.983 40 H 0.034 0.966 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.163 -10.099 7.722 18.299 hybrid contribution 0.554 2.347 -0.611 2.488 sum -12.609 -7.752 7.111 16.421 Atomic orbital electron populations 1.20858 0.81398 1.06223 1.05943 1.27719 1.03722 0.90457 0.96550 1.66229 1.03753 1.32678 1.19294 1.19510 0.89784 0.92051 1.01082 1.20402 0.89986 0.99411 1.00200 1.20924 0.96624 0.95119 0.95933 1.19851 0.92817 0.94284 1.06622 1.18242 0.85904 0.85255 0.76411 1.90692 1.83549 1.19072 1.53336 1.45836 1.06524 1.10233 1.71596 1.21971 0.80018 0.98596 1.00828 1.20863 0.93288 0.89472 0.91529 0.90629 1.22059 0.95447 1.01405 1.01903 1.44077 1.75225 1.12442 1.00805 1.20422 0.95598 0.94998 0.85394 1.19520 1.23815 0.91044 1.04465 0.90856 1.25553 0.98202 1.00956 0.98609 1.70234 1.36551 1.34901 1.15581 0.85423 0.77094 0.82086 0.77104 1.19235 1.22987 1.22022 1.20402 0.88478 1.00163 0.93988 1.23929 0.99653 0.97580 1.12733 1.83650 0.92947 1.09036 1.73313 0.87271 0.86894 0.88329 0.83288 0.84208 0.75047 0.90690 0.93676 0.93316 0.92711 0.90410 0.98257 0.96646 0.95904 0.94612 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.44 71.23 0.74 -0.11 16 2 C 0.10 2.02 7.29 88.66 0.65 2.66 16 3 N -0.50 -14.03 10.56 -182.21 -1.92 -15.96 16 4 C 0.10 3.00 7.00 39.95 0.28 3.28 16 5 C -0.08 -2.49 10.03 22.43 0.23 -2.26 16 6 C -0.06 -2.15 9.44 22.17 0.21 -1.94 16 7 C -0.13 -4.52 5.87 -20.11 -0.12 -4.64 16 8 C 0.55 21.57 7.76 86.71 0.67 22.24 16 9 O -0.58 -25.01 16.34 -4.00 -0.07 -25.07 16 10 N -0.69 -26.47 5.34 -466.21 -2.49 -28.95 16 11 C 0.11 3.99 4.97 86.38 0.43 4.42 16 12 C 0.16 5.57 2.87 44.99 0.13 5.70 16 13 H 0.08 2.63 7.87 -2.38 -0.02 2.61 16 14 C -0.15 -4.45 9.18 71.98 0.66 -3.79 16 15 N -0.60 -26.89 2.29 -702.76 -1.61 -28.50 16 16 C 0.18 8.56 8.11 127.77 1.04 9.60 16 17 C -0.26 -12.61 9.32 84.03 0.78 -11.82 16 18 H 0.07 3.47 7.82 -2.91 -0.02 3.45 16 19 C -0.04 -1.89 5.12 84.86 0.43 -1.45 16 20 N -0.93 -50.83 10.65 21.65 0.23 -50.60 16 21 Si 0.95 42.26 29.57 68.60 2.03 44.29 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 25 C -0.01 -0.23 9.62 22.66 0.22 -0.01 16 26 C -0.22 -6.41 6.54 22.90 0.15 -6.26 16 27 S 0.15 3.15 23.11 -56.49 -1.31 1.84 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.14 4.80 6.38 -2.91 -0.02 4.79 16 33 H 0.41 16.36 5.91 -92.71 -0.55 15.81 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.76 7.84 -2.39 -0.02 1.74 16 36 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.00 -0.05 7.41 -2.39 -0.02 -0.06 16 40 H 0.01 0.78 7.23 -2.39 -0.02 0.76 16 41 H 0.02 0.95 6.43 -2.38 -0.02 0.93 16 42 H 0.24 13.37 8.31 -92.71 -0.77 12.60 16 43 H 0.15 4.40 7.64 -2.91 -0.02 4.38 16 Total: -1.00 -64.52 369.13 1.86 -62.66 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.50 Total: 24.68 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.50 Total: 15.62 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.79 Total: -124.02 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -64.52 1.86 -62.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700481239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.055 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds