Wall clock time and date at job start Tue Mar 31 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47705 * 2 1 4 4 C 1.53011 * 109.46863 * 240.00423 * 2 1 3 5 5 C 1.53002 * 109.47019 * 175.00150 * 4 2 1 6 6 C 1.52999 * 109.47153 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.36933 * 120.00138 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99943 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00289 * 179.97438 * 8 7 6 11 11 N 1.31622 * 119.99781 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00170 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47272 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47448 * 119.99736 * 12 10 8 15 15 H 1.48500 * 109.47201 * 240.00089 * 12 10 8 16 16 N 1.46494 * 109.47270 * 120.00873 * 2 1 3 17 17 C 1.34777 * 119.99863 * 274.99432 * 16 2 1 18 18 O 1.21588 * 119.99942 * 0.02562 * 17 16 2 19 19 C 1.47562 * 120.00060 * 179.97438 * 17 16 2 20 20 C 1.40111 * 120.59230 * 0.02562 * 19 17 16 21 21 N 1.30612 * 121.17839 * 179.97438 * 20 19 17 22 22 C 1.34909 * 122.44270 * 359.97438 * 21 20 19 23 23 C 1.40623 * 128.46039 * 179.97438 * 22 21 20 24 24 C 1.32281 * 115.91193 * 180.02562 * 23 22 21 25 25 S 1.75507 * 110.83482 * 0.02562 * 24 23 22 26 26 C 1.40089 * 119.27268 * 0.02562 * 22 21 20 27 27 C 1.39357 * 119.75447 * 359.97438 * 26 22 21 28 28 H 1.08999 * 109.46888 * 59.99381 * 1 2 3 29 29 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46869 * 299.99800 * 1 2 3 31 31 H 1.08998 * 109.47145 * 294.99652 * 4 2 1 32 32 H 1.09000 * 109.46915 * 55.00583 * 4 2 1 33 33 H 1.09005 * 109.47237 * 300.00161 * 5 4 2 34 34 H 1.09001 * 109.47412 * 59.99625 * 5 4 2 35 35 H 1.09002 * 109.46544 * 299.99765 * 6 5 4 36 36 H 1.08994 * 109.47147 * 59.99554 * 6 5 4 37 37 H 0.97003 * 119.99989 * 359.97438 * 7 6 5 38 38 H 0.96995 * 120.00008 * 179.97438 * 11 10 8 39 39 H 0.97003 * 120.00604 * 94.99758 * 16 2 1 40 40 H 1.07999 * 119.41353 * 359.96930 * 20 19 17 41 41 H 1.08005 * 122.04145 * 0.02562 * 23 22 21 42 42 H 1.07998 * 124.58018 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.73699 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6133 -1.3139 6 6 4.0747 -1.3339 -2.5635 7 7 5.5348 -1.2311 -2.6249 8 6 6.2186 -1.8053 -3.6631 9 1 5.6815 -2.3344 -4.4364 10 6 7.6020 -1.7075 -3.7215 11 7 8.2566 -1.0632 -2.7788 12 14 8.5347 -2.4902 -5.1381 13 1 7.5742 -3.1509 -6.0582 14 1 9.2860 -1.4426 -5.8751 15 1 9.4852 -3.5001 -4.6071 16 7 2.0183 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8576 1.1611 2.4119 19 6 2.6385 -0.7144 3.5619 20 6 2.9752 -2.0736 3.5129 21 7 3.4117 -2.7007 4.5722 22 6 3.5645 -2.0879 5.7644 23 6 4.0198 -2.6352 6.9771 24 6 4.0725 -1.8024 8.0034 25 16 3.5380 -0.1981 7.5336 26 6 3.2456 -0.7289 5.8819 27 6 2.7772 -0.0299 4.7710 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2058 32 1 1.6054 -0.2615 -2.1371 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 3.7863 -2.3842 -2.5203 36 1 3.6400 -0.8740 -3.4509 37 1 6.0173 -0.7562 -1.9301 38 1 9.2233 -0.9951 -2.8194 39 1 2.2490 -1.6319 1.1524 40 1 2.8720 -2.6124 2.5826 41 1 4.3088 -3.6721 7.0651 42 1 4.4002 -2.0730 8.9963 43 1 2.5263 1.0181 4.8438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700669601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:25 Heat of formation + Delta-G solvation = 21.214378 kcal Electronic energy + Delta-G solvation = -24814.565792 eV Core-core repulsion = 21179.096332 eV Total energy + Delta-G solvation = -3635.469460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05921 -39.64433 -36.88835 -36.04082 -34.87990 -32.89038 -32.71963 -31.45958 -29.96193 -29.27666 -25.79739 -25.39282 -24.19755 -23.07215 -22.22062 -21.17125 -20.80312 -20.63141 -18.88719 -17.38229 -17.12726 -16.99355 -16.53471 -16.13338 -15.40028 -14.82924 -14.71074 -14.60866 -14.41474 -14.28658 -13.79254 -13.59036 -13.50779 -13.24710 -13.01792 -12.97126 -12.74668 -12.23251 -12.12455 -12.10223 -11.53240 -11.33163 -11.19453 -10.86706 -10.84998 -10.80610 -10.51981 -10.42038 -10.33993 -9.97863 -9.74194 -9.68540 -9.30817 -9.08778 -8.85900 -8.44406 -6.90063 -5.74712 -3.03451 -0.22727 0.65489 0.93180 1.40318 1.50946 2.69055 2.91367 3.44300 3.46987 3.49513 3.52094 3.63374 4.19721 4.32780 4.41131 4.56204 4.62115 4.70573 4.74498 4.98108 5.05942 5.12099 5.27740 5.40187 5.41411 5.50942 5.55092 5.58805 5.60505 5.67156 5.76121 5.92379 6.00892 6.04300 6.08737 6.19115 6.35080 6.39021 6.41055 6.86714 6.90051 7.28503 7.38720 7.71681 7.98297 8.44299 9.55128 10.14204 10.48279 11.48328 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.002422 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.411439 B =11555.856131 C =13376.857265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.713 5.713 17 C 0.569 3.431 18 O -0.535 6.535 19 C -0.178 4.178 20 C 0.161 3.839 21 N -0.458 5.458 22 C 0.146 3.854 23 C -0.119 4.119 24 C -0.166 4.166 25 S 0.125 5.875 26 C -0.212 4.212 27 C 0.031 3.969 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.401 0.599 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 -0.445 21.889 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.364 5.364 17 C 0.355 3.645 18 O -0.413 6.413 19 C -0.187 4.187 20 C -0.011 4.011 21 N -0.166 5.166 22 C 0.012 3.988 23 C -0.149 4.149 24 C -0.302 4.302 25 S 0.388 5.612 26 C -0.329 4.329 27 C 0.001 3.999 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.237 0.763 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.310 0.766 22.602 27.883 hybrid contribution 0.926 -1.222 -1.261 1.986 sum -15.383 -0.457 21.341 26.312 Atomic orbital electron populations 1.22176 0.95217 1.02146 1.02543 1.21114 0.93736 0.97893 0.83506 0.89028 1.21869 0.96937 1.00853 0.96528 1.21748 0.93583 1.01548 0.99582 1.20647 0.86201 0.96457 0.94176 1.42392 1.00202 1.66255 1.29036 1.19283 0.89447 1.26999 1.01254 0.91156 1.24759 0.96479 1.01271 0.98670 1.69675 1.07120 1.47068 1.34365 0.86115 0.79904 0.78497 0.81678 1.20557 1.21866 1.21867 1.46002 1.66758 1.14164 1.09496 1.17773 0.77674 0.86363 0.82732 1.90793 1.50308 1.15248 1.84925 1.20902 1.06680 0.96065 0.95044 1.22886 0.91198 0.90406 0.96616 1.67592 1.12818 1.38347 0.97804 1.19281 0.97306 0.89028 0.93203 1.19684 1.03072 1.02314 0.89833 1.25455 1.04928 0.96307 1.03532 1.84367 1.67064 1.10133 0.99644 1.23558 1.10255 0.99024 1.00092 1.20981 0.90038 1.00194 0.88673 0.91363 0.92403 0.92279 0.91277 0.90061 0.91891 0.92059 0.96533 0.96485 0.78341 0.93579 0.76345 0.81531 0.82622 0.80359 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.38 4.75 -26.72 -0.13 -1.50 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 8 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 N -0.71 -7.44 4.48 -54.84 -0.25 -7.69 16 17 C 0.57 7.03 7.74 -12.46 -0.10 6.94 16 18 O -0.53 -8.25 16.07 5.29 0.08 -8.16 16 19 C -0.18 -2.01 5.89 -104.87 -0.62 -2.62 16 20 C 0.16 1.70 10.69 -17.37 -0.19 1.52 16 21 N -0.46 -5.46 10.39 -11.01 -0.11 -5.57 16 22 C 0.15 1.61 6.97 -84.92 -0.59 1.02 16 23 C -0.12 -0.99 10.16 -40.61 -0.41 -1.41 16 24 C -0.17 -1.06 11.08 28.81 0.32 -0.74 16 25 S 0.12 0.96 23.29 -107.50 -2.50 -1.55 16 26 C -0.21 -2.22 6.49 -38.47 -0.25 -2.47 16 27 C 0.03 0.34 9.73 -38.65 -0.38 -0.03 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.40 3.36 6.66 -40.82 -0.27 3.09 16 40 H 0.17 1.30 6.41 -52.49 -0.34 0.96 16 41 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.15 1.56 7.72 -52.48 -0.41 1.15 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -34.97 377.46 -10.19 -45.17 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.90 Total: 7.53 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.57 Total: -5.70 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.03 Total: -60.62 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.97 -10.19 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700669601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.380 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds