Wall clock time and date at job start Tue Mar 31 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47705 * 2 1 4 4 C 1.53011 * 109.46863 * 240.00423 * 2 1 3 5 5 C 1.53002 * 109.47019 * 175.00150 * 4 2 1 6 6 C 1.52999 * 109.47153 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.36933 * 120.00138 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99943 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00289 * 179.97438 * 8 7 6 11 11 N 1.31622 * 119.99781 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00170 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47272 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47448 * 119.99736 * 12 10 8 15 15 H 1.48500 * 109.47201 * 240.00089 * 12 10 8 16 16 N 1.46494 * 109.47270 * 120.00873 * 2 1 3 17 17 C 1.34777 * 119.99863 * 274.99432 * 16 2 1 18 18 O 1.21588 * 119.99942 * 0.02562 * 17 16 2 19 19 C 1.47562 * 120.00060 * 179.97438 * 17 16 2 20 20 C 1.40111 * 120.59230 * 0.02562 * 19 17 16 21 21 N 1.30612 * 121.17839 * 179.97438 * 20 19 17 22 22 C 1.34909 * 122.44270 * 359.97438 * 21 20 19 23 23 C 1.40623 * 128.46039 * 179.97438 * 22 21 20 24 24 C 1.32281 * 115.91193 * 180.02562 * 23 22 21 25 25 S 1.75507 * 110.83482 * 0.02562 * 24 23 22 26 26 C 1.40089 * 119.27268 * 0.02562 * 22 21 20 27 27 C 1.39357 * 119.75447 * 359.97438 * 26 22 21 28 28 H 1.08999 * 109.46888 * 59.99381 * 1 2 3 29 29 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46869 * 299.99800 * 1 2 3 31 31 H 1.08998 * 109.47145 * 294.99652 * 4 2 1 32 32 H 1.09000 * 109.46915 * 55.00583 * 4 2 1 33 33 H 1.09005 * 109.47237 * 300.00161 * 5 4 2 34 34 H 1.09001 * 109.47412 * 59.99625 * 5 4 2 35 35 H 1.09002 * 109.46544 * 299.99765 * 6 5 4 36 36 H 1.08994 * 109.47147 * 59.99554 * 6 5 4 37 37 H 0.97003 * 119.99989 * 359.97438 * 7 6 5 38 38 H 0.96995 * 120.00008 * 179.97438 * 11 10 8 39 39 H 0.97003 * 120.00604 * 94.99758 * 16 2 1 40 40 H 1.07999 * 119.41353 * 359.96930 * 20 19 17 41 41 H 1.08005 * 122.04145 * 0.02562 * 23 22 21 42 42 H 1.07998 * 124.58018 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.73699 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6133 -1.3139 6 6 4.0747 -1.3339 -2.5635 7 7 5.5348 -1.2311 -2.6249 8 6 6.2186 -1.8053 -3.6631 9 1 5.6815 -2.3344 -4.4364 10 6 7.6020 -1.7075 -3.7215 11 7 8.2566 -1.0632 -2.7788 12 14 8.5347 -2.4902 -5.1381 13 1 7.5742 -3.1509 -6.0582 14 1 9.2860 -1.4426 -5.8751 15 1 9.4852 -3.5001 -4.6071 16 7 2.0183 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8576 1.1611 2.4119 19 6 2.6385 -0.7144 3.5619 20 6 2.9752 -2.0736 3.5129 21 7 3.4117 -2.7007 4.5722 22 6 3.5645 -2.0879 5.7644 23 6 4.0198 -2.6352 6.9771 24 6 4.0725 -1.8024 8.0034 25 16 3.5380 -0.1981 7.5336 26 6 3.2456 -0.7289 5.8819 27 6 2.7772 -0.0299 4.7710 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2058 32 1 1.6054 -0.2615 -2.1371 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 3.7863 -2.3842 -2.5203 36 1 3.6400 -0.8740 -3.4509 37 1 6.0173 -0.7562 -1.9301 38 1 9.2233 -0.9951 -2.8194 39 1 2.2490 -1.6319 1.1524 40 1 2.8720 -2.6124 2.5826 41 1 4.3088 -3.6721 7.0651 42 1 4.4002 -2.0730 8.9963 43 1 2.5263 1.0181 4.8438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700669601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:25 Heat of formation + Delta-G solvation = -1.965973 kcal Electronic energy + Delta-G solvation = -24815.570967 eV Core-core repulsion = 21179.096332 eV Total energy + Delta-G solvation = -3636.474636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88027 -40.54148 -38.01102 -36.76051 -36.53742 -34.23580 -33.70765 -32.80011 -31.20499 -30.32867 -27.23624 -26.26979 -25.07601 -24.66918 -23.10527 -22.36440 -21.92868 -21.51176 -19.70026 -19.11671 -18.18504 -17.89616 -17.27594 -17.02590 -16.65180 -16.32161 -15.86811 -15.59315 -15.43402 -15.29609 -15.15536 -14.99378 -14.49148 -14.35266 -14.02841 -13.84025 -13.65624 -13.42474 -13.18418 -13.00522 -12.82540 -12.80476 -12.37301 -12.22029 -12.13574 -12.04524 -11.85905 -11.72321 -11.63943 -11.49122 -11.32385 -10.94016 -10.59691 -10.22247 -9.84577 -9.09557 -9.00133 -7.95831 -5.24977 -0.98626 -0.14357 0.27187 0.78559 0.81905 1.46910 1.48073 1.58260 1.81052 2.03812 2.55764 2.64014 2.94006 3.38170 3.45193 3.51170 3.62940 3.66873 3.91242 3.96805 4.05140 4.13116 4.29950 4.36622 4.43467 4.60316 4.62511 4.67426 4.73054 4.85105 4.88471 4.88836 4.93374 5.02246 5.02542 5.14226 5.25569 5.33939 5.36602 5.44721 5.51683 5.54574 6.26950 6.41359 6.59763 7.07549 7.32304 8.10143 8.31517 9.28226 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.002422 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.411439 B =11555.856131 C =13376.857265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.244 4.244 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.263 1.263 14 H -0.294 1.294 15 H -0.293 1.293 16 N -0.703 5.703 17 C 0.570 3.430 18 O -0.573 6.573 19 C -0.193 4.193 20 C 0.162 3.838 21 N -0.481 5.481 22 C 0.131 3.869 23 C -0.144 4.144 24 C -0.139 4.139 25 S 0.146 5.854 26 C -0.235 4.235 27 C 0.025 3.975 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.027 0.973 36 H 0.020 0.980 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.412 0.588 40 H 0.190 0.810 41 H 0.170 0.830 42 H 0.218 0.782 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 -1.844 22.344 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.376 4.376 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.220 1.220 16 N -0.355 5.355 17 C 0.356 3.644 18 O -0.454 6.454 19 C -0.202 4.202 20 C -0.011 4.011 21 N -0.190 5.190 22 C -0.003 4.003 23 C -0.173 4.173 24 C -0.276 4.276 25 S 0.410 5.590 26 C -0.352 4.352 27 C -0.005 4.005 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.250 0.750 40 H 0.206 0.794 41 H 0.188 0.812 42 H 0.235 0.765 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.271 -0.668 23.037 28.800 hybrid contribution 1.175 -0.768 -1.294 1.909 sum -16.096 -1.436 21.744 27.091 Atomic orbital electron populations 1.22105 0.93496 1.03222 1.02488 1.21059 0.94968 0.96680 0.83333 0.91327 1.21773 0.93440 1.02454 0.97116 1.21616 0.96590 0.99754 0.97323 1.20874 0.83048 0.97514 0.96254 1.42680 1.02647 1.65906 1.28145 1.19716 0.89988 1.26146 1.01711 0.90407 1.25630 0.97596 1.02548 1.01470 1.69838 1.07006 1.49000 1.36486 0.85044 0.78477 0.77342 0.78736 1.18768 1.22103 1.21983 1.45958 1.65992 1.14640 1.08927 1.17939 0.77116 0.85922 0.83378 1.90766 1.52224 1.16822 1.85551 1.20836 1.08008 0.96532 0.94778 1.23202 0.90468 0.90168 0.97244 1.67623 1.13883 1.38977 0.98501 1.19795 0.97175 0.89500 0.93821 1.19881 1.04582 1.03502 0.89355 1.25952 1.02137 0.94912 1.04579 1.84321 1.66352 1.10842 0.97470 1.23776 1.10739 0.99225 1.01455 1.21104 0.89929 1.00319 0.89141 0.90077 0.90709 0.93706 0.89046 0.88809 0.93562 0.92393 0.95483 0.96160 0.79766 0.94062 0.75010 0.79370 0.81227 0.76524 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.14 2.96 2.57 45.00 0.12 3.08 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.22 4.75 30.60 0.15 -2.07 16 5 C -0.11 -3.45 5.22 30.59 0.16 -3.29 16 6 C 0.15 5.75 6.26 86.38 0.54 6.29 16 7 N -0.75 -38.92 5.60 -343.46 -1.92 -40.85 16 8 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 11 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 12 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 16 N -0.70 -14.34 4.48 -445.68 -2.00 -16.34 16 17 C 0.57 14.45 7.74 86.70 0.67 15.12 16 18 O -0.57 -18.42 16.07 -3.99 -0.06 -18.48 16 19 C -0.19 -4.48 5.89 -20.03 -0.12 -4.59 16 20 C 0.16 3.42 10.69 85.33 0.91 4.34 16 21 N -0.48 -11.50 10.39 -188.74 -1.96 -13.46 16 22 C 0.13 2.87 6.97 39.70 0.28 3.15 16 23 C -0.14 -2.20 10.16 21.79 0.22 -1.98 16 24 C -0.14 -1.43 11.08 66.76 0.74 -0.69 16 25 S 0.15 2.05 23.29 -56.49 -1.32 0.73 16 26 C -0.23 -4.91 6.49 22.99 0.15 -4.76 16 27 C 0.02 0.57 9.73 22.88 0.22 0.79 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.37 20.68 7.67 -92.71 -0.71 19.96 16 38 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.41 6.40 6.66 -92.71 -0.62 5.78 16 40 H 0.19 2.81 6.41 -2.91 -0.02 2.79 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.15 3.33 7.72 -2.91 -0.02 3.31 16 Total: -1.00 -76.64 377.46 0.79 -75.85 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.28 Total: 28.24 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.03 Total: -3.78 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.60 Total: -131.23 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.32 Total: 0.73 kcal Total: -76.64 0.79 -75.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700669601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.885 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds