Wall clock time and date at job start Tue Mar 31 2020 18:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47499 * 2 1 4 4 C 1.52998 * 109.46996 * 120.00946 * 2 1 3 5 5 C 1.53001 * 109.46690 * 184.99762 * 4 2 1 6 6 C 1.53010 * 109.46783 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99885 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99527 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00308 * 180.02562 * 8 7 6 11 11 N 1.31612 * 119.99835 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47036 * 90.00209 * 12 10 8 14 14 H 1.48501 * 109.47280 * 209.99867 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00116 * 12 10 8 16 16 N 1.46500 * 109.47010 * 240.00502 * 2 1 3 17 17 C 1.34784 * 120.00058 * 84.99904 * 16 2 1 18 18 O 1.21588 * 119.99841 * 0.02562 * 17 16 2 19 19 C 1.47558 * 119.99994 * 179.97438 * 17 16 2 20 20 C 1.40122 * 120.58955 * 0.02562 * 19 17 16 21 21 N 1.30613 * 121.17075 * 179.71679 * 20 19 17 22 22 C 1.34906 * 122.44794 * 0.26039 * 21 20 19 23 23 C 1.40623 * 128.45767 * 179.97438 * 22 21 20 24 24 C 1.32283 * 115.90657 * 180.02562 * 23 22 21 25 25 S 1.75501 * 110.84032 * 0.02562 * 24 23 22 26 26 C 1.40095 * 119.27160 * 359.97438 * 22 21 20 27 27 C 1.39359 * 119.75271 * 359.96254 * 26 22 21 28 28 H 1.08998 * 109.47089 * 299.99579 * 1 2 3 29 29 H 1.09005 * 109.47450 * 59.99216 * 1 2 3 30 30 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46863 * 304.99032 * 4 2 1 32 32 H 1.08997 * 109.47553 * 64.99459 * 4 2 1 33 33 H 1.08994 * 109.47409 * 299.99604 * 5 4 2 34 34 H 1.08999 * 109.47125 * 60.00313 * 5 4 2 35 35 H 1.08994 * 109.47238 * 300.00214 * 6 5 4 36 36 H 1.08999 * 109.46622 * 60.00511 * 6 5 4 37 37 H 0.96998 * 120.00659 * 0.02562 * 7 6 5 38 38 H 0.97003 * 120.00117 * 180.02562 * 11 10 8 39 39 H 0.97004 * 120.00640 * 265.00015 * 16 2 1 40 40 H 1.08002 * 119.41671 * 0.02562 * 20 19 17 41 41 H 1.07995 * 122.04437 * 0.02562 * 23 22 21 42 42 H 1.07997 * 124.57939 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.73192 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7215 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0747 -1.3345 2.5630 7 7 5.5348 -1.2316 2.6243 8 6 6.2187 -1.8061 3.6624 9 1 5.6815 -2.3354 4.4356 10 6 7.6021 -1.7083 3.7208 11 7 8.2565 -1.0629 2.7788 12 14 8.5348 -2.4914 5.1373 13 1 8.8970 -3.8866 4.7802 14 1 9.7703 -1.7129 5.4069 15 1 7.6787 -2.4972 6.3506 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0180 -2.3572 18 8 1.8582 1.1618 -2.4116 19 6 2.6393 -0.7134 -3.5620 20 6 2.9762 -2.0727 -3.5131 21 7 3.4079 -2.7007 -4.5738 22 6 3.5598 -2.0880 -5.7661 23 6 4.0112 -2.6361 -6.9799 24 6 4.0649 -1.8027 -8.0058 25 16 3.5380 -0.1966 -7.5338 26 6 3.2452 -0.7278 -5.8822 27 6 2.7808 -0.0280 -4.7701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7515 -1.7717 1.2054 33 1 3.9994 -1.0729 0.4258 34 1 3.8531 0.4367 1.3573 35 1 3.6401 -0.8747 3.4506 36 1 3.7864 -2.3847 2.5195 37 1 6.0173 -0.7566 1.9297 38 1 9.2233 -0.9948 2.8194 39 1 2.2490 -1.6317 -1.1529 40 1 2.8723 -2.6118 -2.5831 41 1 4.2965 -3.6739 -7.0690 42 1 4.3900 -2.0739 -8.9993 43 1 2.5332 1.0209 -4.8419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700669602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:30 Heat of formation + Delta-G solvation = 21.281810 kcal Electronic energy + Delta-G solvation = -24814.349788 eV Core-core repulsion = 21178.883252 eV Total energy + Delta-G solvation = -3635.466536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05839 -39.64334 -36.88793 -36.04036 -34.87781 -32.89023 -32.71853 -31.45903 -29.96129 -29.27579 -25.79609 -25.39228 -24.19694 -23.06954 -22.22018 -21.17023 -20.80231 -20.63071 -18.88665 -17.38187 -17.12680 -16.99150 -16.53451 -16.13281 -15.39975 -14.82831 -14.70920 -14.60779 -14.41435 -14.28743 -13.79330 -13.58937 -13.50340 -13.24800 -13.01773 -12.97243 -12.74405 -12.23200 -12.12370 -12.10175 -11.53252 -11.32930 -11.19387 -10.85575 -10.84888 -10.80000 -10.52654 -10.42129 -10.34131 -10.00282 -9.74144 -9.67959 -9.30753 -9.08730 -8.85263 -8.44395 -6.90024 -5.74442 -3.03215 -0.22719 0.65517 0.93190 1.40329 1.50949 2.69036 2.91430 3.44691 3.47027 3.49436 3.51527 3.63366 4.19725 4.32792 4.41143 4.56329 4.62154 4.70619 4.74568 4.98164 5.05974 5.12162 5.27780 5.40280 5.41418 5.50983 5.55133 5.58938 5.60532 5.67175 5.76187 5.92452 6.00922 6.04357 6.08843 6.19197 6.35246 6.39083 6.41209 6.86846 6.90212 7.28535 7.38749 7.71287 7.98327 8.44578 9.55330 10.14432 10.48518 11.48534 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.002422 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.436434 B =11558.916266 C =13377.532343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.713 5.713 17 C 0.569 3.431 18 O -0.535 6.535 19 C -0.178 4.178 20 C 0.162 3.838 21 N -0.458 5.458 22 C 0.146 3.854 23 C -0.119 4.119 24 C -0.166 4.166 25 S 0.125 5.875 26 C -0.212 4.212 27 C 0.031 3.969 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.401 0.599 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.201 -0.418 -21.885 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.364 5.364 17 C 0.355 3.645 18 O -0.413 6.413 19 C -0.187 4.187 20 C -0.011 4.011 21 N -0.166 5.166 22 C 0.012 3.988 23 C -0.149 4.149 24 C -0.302 4.302 25 S 0.388 5.612 26 C -0.329 4.329 27 C 0.001 3.999 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.267 0.806 -22.596 27.854 hybrid contribution 0.914 -1.240 1.261 1.991 sum -15.353 -0.434 -21.336 26.289 Atomic orbital electron populations 1.22178 0.95219 1.02144 1.02543 1.21114 0.93734 0.97896 0.83503 0.89027 1.21866 0.96939 1.00851 0.96529 1.21748 0.93581 1.01547 0.99583 1.20648 0.86203 0.96451 0.94176 1.42383 1.00195 1.66236 1.29061 1.19239 0.89444 1.27074 1.01315 0.91213 1.24755 0.96473 1.01229 0.98672 1.69662 1.07185 1.46918 1.34478 0.86186 0.79515 0.78653 0.81824 1.21718 1.21766 1.20766 1.46005 1.66766 1.14167 1.09487 1.17774 0.77678 0.86361 0.82730 1.90793 1.50336 1.15225 1.84919 1.20903 1.06659 0.96069 0.95062 1.22889 0.91207 0.90398 0.96602 1.67590 1.12840 1.38363 0.97775 1.19281 0.97312 0.89018 0.93204 1.19682 1.03086 1.02313 0.89820 1.25456 1.04944 0.96295 1.03535 1.84367 1.67261 1.09969 0.99604 1.23560 1.10286 0.99001 1.00085 1.20980 0.90025 1.00207 0.88671 0.91358 0.92285 0.92404 0.90061 0.91276 0.92059 0.91890 0.96487 0.96541 0.78339 0.93525 0.76346 0.81529 0.82623 0.80360 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.50 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.99 5.60 -59.90 -0.34 -19.33 16 8 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 N -0.71 -7.45 4.48 -54.84 -0.25 -7.69 16 17 C 0.57 7.04 7.74 -12.46 -0.10 6.94 16 18 O -0.53 -8.25 16.07 5.29 0.08 -8.16 16 19 C -0.18 -2.01 5.89 -104.87 -0.62 -2.63 16 20 C 0.16 1.71 10.69 -17.36 -0.19 1.52 16 21 N -0.46 -5.46 10.39 -11.00 -0.11 -5.58 16 22 C 0.15 1.61 6.97 -84.92 -0.59 1.02 16 23 C -0.12 -0.99 10.16 -40.61 -0.41 -1.41 16 24 C -0.17 -1.06 11.08 28.81 0.32 -0.74 16 25 S 0.12 0.96 23.29 -107.50 -2.50 -1.55 16 26 C -0.21 -2.22 6.49 -38.47 -0.25 -2.47 16 27 C 0.03 0.34 9.73 -38.65 -0.38 -0.03 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.40 3.36 6.66 -40.82 -0.27 3.09 16 40 H 0.17 1.30 6.41 -52.49 -0.34 0.96 16 41 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.15 1.56 7.72 -52.48 -0.41 1.15 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -34.96 377.46 -10.19 -45.15 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.90 Total: 7.58 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.57 Total: -5.71 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.03 Total: -60.65 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.96 -10.19 -45.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700669602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds