Wall clock time and date at job start Tue Mar 31 2020 18:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47499 * 2 1 4 4 C 1.52998 * 109.46996 * 120.00946 * 2 1 3 5 5 C 1.53001 * 109.46690 * 184.99762 * 4 2 1 6 6 C 1.53010 * 109.46783 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99885 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99527 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00308 * 180.02562 * 8 7 6 11 11 N 1.31612 * 119.99835 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47036 * 90.00209 * 12 10 8 14 14 H 1.48501 * 109.47280 * 209.99867 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00116 * 12 10 8 16 16 N 1.46500 * 109.47010 * 240.00502 * 2 1 3 17 17 C 1.34784 * 120.00058 * 84.99904 * 16 2 1 18 18 O 1.21588 * 119.99841 * 0.02562 * 17 16 2 19 19 C 1.47558 * 119.99994 * 179.97438 * 17 16 2 20 20 C 1.40122 * 120.58955 * 0.02562 * 19 17 16 21 21 N 1.30613 * 121.17075 * 179.71679 * 20 19 17 22 22 C 1.34906 * 122.44794 * 0.26039 * 21 20 19 23 23 C 1.40623 * 128.45767 * 179.97438 * 22 21 20 24 24 C 1.32283 * 115.90657 * 180.02562 * 23 22 21 25 25 S 1.75501 * 110.84032 * 0.02562 * 24 23 22 26 26 C 1.40095 * 119.27160 * 359.97438 * 22 21 20 27 27 C 1.39359 * 119.75271 * 359.96254 * 26 22 21 28 28 H 1.08998 * 109.47089 * 299.99579 * 1 2 3 29 29 H 1.09005 * 109.47450 * 59.99216 * 1 2 3 30 30 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46863 * 304.99032 * 4 2 1 32 32 H 1.08997 * 109.47553 * 64.99459 * 4 2 1 33 33 H 1.08994 * 109.47409 * 299.99604 * 5 4 2 34 34 H 1.08999 * 109.47125 * 60.00313 * 5 4 2 35 35 H 1.08994 * 109.47238 * 300.00214 * 6 5 4 36 36 H 1.08999 * 109.46622 * 60.00511 * 6 5 4 37 37 H 0.96998 * 120.00659 * 0.02562 * 7 6 5 38 38 H 0.97003 * 120.00117 * 180.02562 * 11 10 8 39 39 H 0.97004 * 120.00640 * 265.00015 * 16 2 1 40 40 H 1.08002 * 119.41671 * 0.02562 * 20 19 17 41 41 H 1.07995 * 122.04437 * 0.02562 * 23 22 21 42 42 H 1.07997 * 124.57939 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.73192 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7215 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0747 -1.3345 2.5630 7 7 5.5348 -1.2316 2.6243 8 6 6.2187 -1.8061 3.6624 9 1 5.6815 -2.3354 4.4356 10 6 7.6021 -1.7083 3.7208 11 7 8.2565 -1.0629 2.7788 12 14 8.5348 -2.4914 5.1373 13 1 8.8970 -3.8866 4.7802 14 1 9.7703 -1.7129 5.4069 15 1 7.6787 -2.4972 6.3506 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0180 -2.3572 18 8 1.8582 1.1618 -2.4116 19 6 2.6393 -0.7134 -3.5620 20 6 2.9762 -2.0727 -3.5131 21 7 3.4079 -2.7007 -4.5738 22 6 3.5598 -2.0880 -5.7661 23 6 4.0112 -2.6361 -6.9799 24 6 4.0649 -1.8027 -8.0058 25 16 3.5380 -0.1966 -7.5338 26 6 3.2452 -0.7278 -5.8822 27 6 2.7808 -0.0280 -4.7701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7515 -1.7717 1.2054 33 1 3.9994 -1.0729 0.4258 34 1 3.8531 0.4367 1.3573 35 1 3.6401 -0.8747 3.4506 36 1 3.7864 -2.3847 2.5195 37 1 6.0173 -0.7566 1.9297 38 1 9.2233 -0.9948 2.8194 39 1 2.2490 -1.6317 -1.1529 40 1 2.8723 -2.6118 -2.5831 41 1 4.2965 -3.6739 -7.0690 42 1 4.3900 -2.0739 -8.9993 43 1 2.5332 1.0209 -4.8419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700669602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:29 Heat of formation + Delta-G solvation = -1.886882 kcal Electronic energy + Delta-G solvation = -24815.354457 eV Core-core repulsion = 21178.883252 eV Total energy + Delta-G solvation = -3636.471206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87975 -40.54092 -38.01095 -36.76023 -36.53597 -34.23551 -33.70785 -32.80030 -31.20456 -30.32809 -27.23464 -26.26990 -25.07525 -24.66732 -23.10514 -22.36447 -21.92866 -21.51160 -19.69999 -19.11440 -18.18494 -17.89617 -17.27592 -17.02582 -16.65056 -16.32138 -15.86805 -15.59213 -15.43422 -15.29198 -15.15702 -14.99482 -14.49104 -14.35263 -14.02887 -13.83965 -13.65621 -13.42289 -13.18030 -13.00827 -12.82511 -12.77024 -12.37308 -12.24606 -12.13634 -12.07302 -11.85614 -11.71972 -11.63965 -11.49365 -11.32361 -10.92745 -10.59674 -10.22235 -9.84562 -9.09560 -9.00105 -7.95618 -5.24814 -0.98638 -0.14362 0.27178 0.78553 0.81898 1.46823 1.49065 1.57531 1.80996 2.03835 2.55929 2.64016 2.93976 3.38233 3.45178 3.51151 3.62912 3.66905 3.91252 3.96845 4.05147 4.13130 4.30029 4.36622 4.43467 4.60304 4.62518 4.67446 4.73053 4.85113 4.88464 4.88831 4.93365 5.02200 5.02556 5.14224 5.25564 5.33906 5.36618 5.44626 5.51525 5.54576 6.26978 6.41339 6.59762 7.07531 7.32399 8.10333 8.31717 9.28242 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.002422 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.436434 B =11558.916266 C =13377.532343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.285 1.285 14 H -0.296 1.296 15 H -0.268 1.268 16 N -0.703 5.703 17 C 0.570 3.430 18 O -0.573 6.573 19 C -0.193 4.193 20 C 0.162 3.838 21 N -0.481 5.481 22 C 0.131 3.869 23 C -0.144 4.144 24 C -0.139 4.139 25 S 0.147 5.853 26 C -0.235 4.235 27 C 0.025 3.975 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.027 0.973 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.412 0.588 40 H 0.190 0.810 41 H 0.170 0.830 42 H 0.218 0.782 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.098 -1.812 -22.336 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.212 1.212 14 H -0.223 1.223 15 H -0.192 1.192 16 N -0.355 5.355 17 C 0.356 3.644 18 O -0.454 6.454 19 C -0.202 4.202 20 C -0.011 4.011 21 N -0.190 5.190 22 C -0.003 4.003 23 C -0.173 4.173 24 C -0.276 4.276 25 S 0.410 5.590 26 C -0.352 4.352 27 C -0.005 4.005 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.250 0.750 40 H 0.206 0.794 41 H 0.188 0.812 42 H 0.235 0.765 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.215 -0.623 -23.028 28.758 hybrid contribution 1.158 -0.789 1.292 1.906 sum -16.057 -1.412 -21.736 27.060 Atomic orbital electron populations 1.22106 0.93497 1.03220 1.02489 1.21058 0.94967 0.96682 0.83328 0.91325 1.21770 0.93442 1.02452 0.97118 1.21616 0.96588 0.99753 0.97322 1.20874 0.83054 0.97507 0.96249 1.42670 1.02637 1.65894 1.28175 1.19683 0.90002 1.26244 1.01797 0.90427 1.25629 0.97587 1.02492 1.01482 1.69829 1.07037 1.48858 1.36593 0.85109 0.77848 0.77502 0.79132 1.21225 1.22282 1.19238 1.45962 1.66000 1.14643 1.08918 1.17940 0.77119 0.85920 0.83375 1.90766 1.52251 1.16799 1.85546 1.20836 1.07986 0.96536 0.94796 1.23206 0.90481 0.90161 0.97232 1.67620 1.13905 1.38990 0.98471 1.19796 0.97177 0.89491 0.93825 1.19880 1.04599 1.03500 0.89337 1.25952 1.02144 0.94902 1.04586 1.84321 1.66543 1.10684 0.97431 1.23778 1.10771 0.99201 1.01445 1.21102 0.89917 1.00333 0.89140 0.90072 0.93711 0.90712 0.88811 0.89047 0.92392 0.93559 0.96177 0.95491 0.79765 0.94050 0.75012 0.79369 0.81227 0.76525 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.14 2.97 2.57 44.99 0.12 3.08 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.22 4.75 30.59 0.15 -2.07 16 5 C -0.11 -3.45 5.22 30.60 0.16 -3.29 16 6 C 0.15 5.76 6.26 86.38 0.54 6.30 16 7 N -0.75 -38.96 5.60 -343.44 -1.92 -40.88 16 8 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 11 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 12 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 N -0.70 -14.35 4.48 -445.67 -2.00 -16.35 16 17 C 0.57 14.46 7.74 86.70 0.67 15.13 16 18 O -0.57 -18.42 16.07 -3.99 -0.06 -18.49 16 19 C -0.19 -4.48 5.89 -20.03 -0.12 -4.60 16 20 C 0.16 3.43 10.69 85.33 0.91 4.34 16 21 N -0.48 -11.50 10.39 -188.73 -1.96 -13.46 16 22 C 0.13 2.87 6.97 39.70 0.28 3.15 16 23 C -0.14 -2.20 10.16 21.79 0.22 -1.98 16 24 C -0.14 -1.43 11.08 66.76 0.74 -0.69 16 25 S 0.15 2.05 23.29 -56.49 -1.32 0.73 16 26 C -0.23 -4.91 6.49 22.99 0.15 -4.76 16 27 C 0.02 0.57 9.73 22.87 0.22 0.79 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.77 7.75 -2.39 -0.02 1.76 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.37 20.69 7.67 -92.71 -0.71 19.98 16 38 H 0.25 15.20 8.31 -92.71 -0.77 14.42 16 39 H 0.41 6.41 6.66 -92.71 -0.62 5.79 16 40 H 0.19 2.81 6.41 -2.91 -0.02 2.80 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.15 3.33 7.72 -2.91 -0.02 3.31 16 Total: -1.00 -76.62 377.46 0.79 -75.83 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.28 Total: 28.42 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.03 Total: -3.84 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -5.60 Total: -131.30 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.32 Total: 0.73 kcal Total: -76.62 0.79 -75.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700669602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.943 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds