Wall clock time and date at job start Tue Mar 31 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47055 * 240.00758 * 2 1 3 5 5 C 1.52998 * 109.47188 * 175.00104 * 4 2 1 6 6 C 1.53002 * 109.46856 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46940 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99773 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00338 * 0.02562 * 8 7 6 10 10 C 1.38810 * 119.99837 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00138 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00124 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47216 * 59.99859 * 12 10 8 14 14 H 1.48505 * 109.47213 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46743 * 299.99706 * 12 10 8 16 16 N 1.46493 * 109.47617 * 120.00613 * 2 1 3 17 17 C 1.34777 * 119.99729 * 275.00031 * 16 2 1 18 18 O 1.21575 * 120.00271 * 359.97438 * 17 16 2 19 19 C 1.47661 * 120.00028 * 179.97438 * 17 16 2 20 20 C 1.40163 * 119.85488 * 359.97438 * 19 17 16 21 21 C 1.36220 * 120.07615 * 180.02562 * 20 19 17 22 22 C 1.39573 * 120.43786 * 359.95002 * 21 20 19 23 23 S 1.76152 * 131.53668 * 180.02562 * 22 21 20 24 24 C 1.70624 * 90.85732 * 179.97438 * 23 22 21 25 25 N 1.27845 * 111.58776 * 359.73622 * 24 23 22 26 26 C 1.34744 * 117.84315 * 0.49056 * 25 24 23 27 27 C 1.38719 * 119.85465 * 180.02562 * 19 17 16 28 28 H 1.09005 * 109.46735 * 299.99643 * 1 2 3 29 29 H 1.09004 * 109.47177 * 59.99674 * 1 2 3 30 30 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46700 * 295.00047 * 4 2 1 32 32 H 1.08999 * 109.47419 * 54.99416 * 4 2 1 33 33 H 1.08998 * 109.46702 * 299.99164 * 5 4 2 34 34 H 1.08999 * 109.47502 * 59.99363 * 5 4 2 35 35 H 1.08998 * 109.46864 * 299.99165 * 6 5 4 36 36 H 1.08999 * 109.47502 * 59.99464 * 6 5 4 37 37 H 0.97001 * 119.99906 * 0.02562 * 7 6 5 38 38 H 0.97001 * 120.00288 * 179.97438 * 11 10 8 39 39 H 0.97004 * 120.00696 * 94.99159 * 16 2 1 40 40 H 1.08002 * 119.95957 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.77800 * 179.97438 * 21 20 19 42 42 H 1.08005 * 124.20205 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.97848 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0747 -1.3348 -2.5629 7 7 5.5348 -1.2310 -2.6249 8 6 6.2186 -1.8059 -3.6627 9 1 5.6816 -2.3355 -4.4357 10 6 7.6019 -1.7071 -3.7218 11 7 8.2564 -1.0612 -2.7801 12 14 8.5346 -2.4907 -5.1379 13 1 8.0775 -1.8976 -6.4203 14 1 9.9894 -2.2446 -4.9688 15 1 8.2787 -3.9535 -5.1499 16 7 2.0184 -0.6907 1.1960 17 6 2.1471 -0.0184 2.3570 18 8 1.8584 1.1613 2.4116 19 6 2.6389 -0.7147 3.5627 20 6 2.9704 -2.0749 3.4965 21 6 3.4241 -2.7218 4.6062 22 6 3.5636 -2.0388 5.8153 23 16 4.1128 -2.5724 7.4017 24 6 3.8783 -1.0067 8.0379 25 7 3.4457 -0.1972 7.1479 26 6 3.2397 -0.6785 5.9063 27 6 2.7698 -0.0199 4.7562 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7515 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1371 33 1 3.8531 0.4371 -1.3575 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3851 -2.5188 36 1 3.6401 -0.8757 -3.4508 37 1 6.0171 -0.7556 -1.9305 38 1 9.2230 -0.9924 -2.8211 39 1 2.2490 -1.6319 1.1525 40 1 2.8653 -2.6109 2.5648 41 1 3.6777 -3.7701 4.5498 42 1 4.0748 -0.7326 9.0640 43 1 2.5125 1.0280 4.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700680887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:41 Heat of formation + Delta-G solvation = -1.389636 kcal Electronic energy + Delta-G solvation = -24814.886130 eV Core-core repulsion = 21178.436487 eV Total energy + Delta-G solvation = -3636.449644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78648 -40.70553 -38.16141 -37.62038 -36.52411 -34.23212 -32.91489 -32.21727 -31.21423 -30.44011 -27.22969 -26.31036 -25.34780 -24.56942 -23.28276 -22.41227 -21.89002 -21.40539 -19.84200 -19.11291 -18.35043 -17.72393 -17.38155 -16.76838 -16.64159 -16.25992 -15.84935 -15.75276 -15.50732 -15.33917 -15.10987 -15.04170 -14.83789 -14.42578 -14.19371 -13.88735 -13.41945 -13.19976 -13.12131 -13.00429 -12.94508 -12.73034 -12.37786 -12.27522 -12.16639 -12.07567 -11.84479 -11.70533 -11.48911 -11.25441 -11.12404 -10.91149 -10.75077 -10.19125 -9.89191 -9.22009 -8.99555 -7.94809 -5.24151 -0.72199 -0.42223 0.18175 0.61983 1.16007 1.47327 1.50832 1.57034 1.74815 2.02449 2.56600 2.64009 2.97598 3.38772 3.44091 3.57126 3.68926 3.88369 3.98728 4.05719 4.10442 4.13180 4.30301 4.40223 4.45237 4.60129 4.63431 4.69486 4.84528 4.88577 4.91982 4.94828 4.95608 5.02759 5.05619 5.14683 5.33301 5.36416 5.42096 5.44864 5.51806 5.56429 6.27498 6.45113 6.48620 7.12312 7.33011 8.10956 8.32456 9.28778 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.002441 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.980112 B =11468.372588 C =13431.069690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.278 1.278 14 H -0.296 1.296 15 H -0.274 1.274 16 N -0.702 5.702 17 C 0.559 3.441 18 O -0.578 6.578 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.070 4.070 22 C -0.184 4.184 23 S 0.159 5.841 24 C 0.070 3.930 25 N -0.501 5.501 26 C 0.049 3.951 27 C -0.021 4.021 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.414 0.586 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.243 0.757 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.146 -6.849 20.988 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.204 1.204 14 H -0.223 1.223 15 H -0.200 1.200 16 N -0.354 5.354 17 C 0.347 3.653 18 O -0.459 6.459 19 C -0.134 4.134 20 C -0.091 4.091 21 C -0.092 4.092 22 C -0.304 4.304 23 S 0.414 5.586 24 C -0.234 4.234 25 N -0.214 5.214 26 C -0.071 4.071 27 C -0.043 4.043 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.259 0.741 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.091 -6.462 21.502 27.623 hybrid contribution 0.877 0.566 -1.020 1.459 sum -15.214 -5.896 20.483 26.187 Atomic orbital electron populations 1.22105 0.93572 1.03262 1.02367 1.21044 0.94940 0.96630 0.83558 0.91693 1.21762 0.93472 1.02473 0.96972 1.21613 0.96554 0.99677 0.97429 1.20868 0.83062 0.97540 0.96158 1.42665 1.02626 1.65877 1.28196 1.19645 0.89998 1.26343 1.01848 0.90429 1.25628 0.97583 1.02477 1.01441 1.69826 1.07081 1.48835 1.36570 0.85183 0.77007 0.78476 0.78933 1.20391 1.22270 1.20025 1.45926 1.66000 1.14689 1.08769 1.18281 0.77143 0.85999 0.83850 1.90766 1.52223 1.17226 1.85670 1.19700 1.05067 0.95518 0.93075 1.21285 0.95711 0.92035 1.00074 1.20403 0.98444 1.01533 0.88789 1.24503 1.06808 0.97630 1.01412 1.83887 1.63815 1.12892 0.98003 1.28849 0.97435 0.92641 1.04496 1.66239 1.16874 1.37796 1.00513 1.19208 1.04547 0.91161 0.92159 1.20699 0.94370 1.00015 0.89182 0.93913 0.90158 0.90529 0.88870 0.88955 0.93785 0.92212 0.95317 0.96320 0.79757 0.94043 0.74801 0.81334 0.81252 0.74111 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.14 3.01 2.57 44.99 0.12 3.13 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C -0.11 -2.19 4.75 30.60 0.15 -2.04 16 5 C -0.11 -3.43 5.22 30.59 0.16 -3.27 16 6 C 0.15 5.71 6.26 86.38 0.54 6.25 16 7 N -0.75 -38.54 5.60 -343.44 -1.92 -40.47 16 8 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 12 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 N -0.70 -14.36 4.48 -445.59 -2.00 -16.36 16 17 C 0.56 14.76 7.73 86.73 0.67 15.43 16 18 O -0.58 -19.93 15.96 -3.95 -0.06 -19.99 16 19 C -0.13 -2.95 5.86 -20.21 -0.12 -3.07 16 20 C -0.07 -1.12 9.47 22.27 0.21 -0.91 16 21 C -0.07 -1.05 9.99 22.12 0.22 -0.83 16 22 C -0.18 -3.43 6.57 23.05 0.15 -3.28 16 23 S 0.16 1.95 23.17 -56.49 -1.31 0.64 16 24 C 0.07 0.96 12.09 130.82 1.58 2.54 16 25 N -0.50 -11.28 10.57 -194.90 -2.06 -13.34 16 26 C 0.05 1.17 6.99 39.74 0.28 1.45 16 27 C -0.02 -0.55 9.65 22.97 0.22 -0.32 16 28 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 38 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.41 6.06 6.60 -92.71 -0.61 5.45 16 40 H 0.17 1.65 6.37 -2.91 -0.02 1.63 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.24 1.10 8.06 -2.91 -0.02 1.07 16 43 H 0.13 3.73 7.60 -2.91 -0.02 3.71 16 Total: -1.00 -78.94 376.80 0.85 -78.09 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.28 Total: 27.51 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.17 Total: -4.09 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.70 Total: -130.30 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -78.94 0.85 -78.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700680887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.703 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds