Wall clock time and date at job start Tue Mar 31 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.53001 * 109.47151 * 120.00719 * 2 1 3 5 5 C 1.52999 * 109.47063 * 184.99833 * 4 2 1 6 6 C 1.52999 * 109.47407 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47506 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00196 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38811 * 120.00213 * 180.02562 * 8 7 6 11 11 N 1.31622 * 119.99580 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46973 * 60.00120 * 12 10 8 14 14 H 1.48497 * 109.46846 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47178 * 299.99798 * 12 10 8 16 16 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 17 17 C 1.34777 * 119.99854 * 84.99752 * 16 2 1 18 18 O 1.21583 * 119.99947 * 0.02562 * 17 16 2 19 19 C 1.47662 * 120.00185 * 180.27903 * 17 16 2 20 20 C 1.40165 * 119.85090 * 359.44738 * 19 17 16 21 21 C 1.36215 * 120.07422 * 179.75873 * 20 19 17 22 22 C 1.39584 * 120.43815 * 0.52187 * 21 20 19 23 23 S 1.76146 * 131.53660 * 179.75938 * 22 21 20 24 24 C 1.70625 * 90.85585 * 179.97438 * 23 22 21 25 25 N 1.27847 * 111.58914 * 359.97438 * 24 23 22 26 26 C 1.34741 * 117.84295 * 0.02562 * 25 24 23 27 27 C 1.38715 * 119.85924 * 179.72866 * 19 17 16 28 28 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 29 29 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 30 30 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46960 * 304.99386 * 4 2 1 32 32 H 1.09000 * 109.47563 * 64.99560 * 4 2 1 33 33 H 1.09001 * 109.47390 * 299.99641 * 5 4 2 34 34 H 1.09005 * 109.47602 * 59.99582 * 5 4 2 35 35 H 1.09000 * 109.47132 * 299.99868 * 6 5 4 36 36 H 1.09000 * 109.47048 * 59.99832 * 6 5 4 37 37 H 0.97001 * 119.99859 * 359.97438 * 7 6 5 38 38 H 0.96998 * 119.99396 * 180.02562 * 11 10 8 39 39 H 0.97000 * 120.00410 * 265.00478 * 16 2 1 40 40 H 1.08001 * 119.96036 * 0.02562 * 20 19 17 41 41 H 1.08004 * 119.78438 * 180.28057 * 21 20 19 42 42 H 1.08002 * 124.20531 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.97574 * 359.95154 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0748 -1.3343 2.5630 7 7 5.5349 -1.2315 2.6244 8 6 6.2187 -1.8059 3.6624 9 1 5.6816 -2.3345 4.4361 10 6 7.6022 -1.7081 3.7209 11 7 8.2566 -1.0635 2.7782 12 14 8.5349 -2.4911 5.1373 13 1 8.2778 -3.9536 5.1509 14 1 9.9896 -2.2452 4.9681 15 1 8.0788 -1.8964 6.4192 16 7 2.0183 -0.6906 -1.1962 17 6 2.1469 -0.0182 -2.3572 18 8 1.8582 1.1616 -2.4116 19 6 2.6332 -0.7157 -3.5644 20 6 2.9712 -2.0743 -3.4967 21 6 3.4156 -2.7234 -4.6087 22 6 3.5487 -2.0418 -5.8196 23 16 4.0904 -2.5773 -7.4079 24 6 3.8500 -1.0129 -8.0454 25 7 3.4152 -0.2041 -7.1559 26 6 3.2217 -0.6823 -5.9111 27 6 2.7592 -0.0221 -4.7591 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7717 1.2055 33 1 3.9994 -1.0729 0.4258 34 1 3.8533 0.4368 1.3573 35 1 3.6403 -0.8745 3.4506 36 1 3.7864 -2.3846 2.5197 37 1 6.0174 -0.7571 1.9293 38 1 9.2234 -0.9955 2.8189 39 1 2.2489 -1.6318 -1.1528 40 1 2.8751 -2.6081 -2.5627 41 1 3.6705 -3.7714 -4.5523 42 1 4.0414 -0.7400 -9.0727 43 1 2.5009 1.0256 -4.8047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700680888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:46 Heat of formation + Delta-G solvation = 22.421572 kcal Electronic energy + Delta-G solvation = -24812.355890 eV Core-core repulsion = 21176.938778 eV Total energy + Delta-G solvation = -3635.417112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99412 -39.80988 -37.24549 -36.62420 -34.87241 -32.73274 -31.73596 -31.25284 -30.07429 -29.30826 -25.76967 -25.56293 -24.38937 -22.95390 -22.51688 -21.11028 -20.78887 -20.48605 -19.12605 -17.56213 -17.01476 -16.85204 -16.63920 -15.94058 -15.36882 -14.93816 -14.76748 -14.67311 -14.46229 -14.29990 -14.01029 -13.77490 -13.51468 -13.45714 -13.00512 -12.78128 -12.45733 -12.21954 -12.19172 -12.11386 -11.44529 -11.32502 -11.17801 -10.84875 -10.81364 -10.52659 -10.49575 -10.42049 -10.12487 -10.08199 -10.02572 -9.68412 -9.27853 -9.12408 -8.85967 -8.55115 -6.91230 -5.75413 -3.04295 -0.03681 0.38378 0.80166 1.26687 1.84244 2.63186 2.90116 3.44069 3.46762 3.48187 3.49634 3.61769 4.14899 4.40405 4.52708 4.57216 4.70899 4.73292 4.80134 4.99708 5.06109 5.13220 5.40676 5.42711 5.53330 5.57810 5.61276 5.65048 5.66048 5.77361 5.79915 5.93898 6.05305 6.09557 6.12218 6.19265 6.34996 6.40350 6.42635 6.86106 6.89363 7.12665 7.34585 7.69608 8.04440 8.43653 9.54259 10.13377 10.47567 11.47474 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.002437 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.959955 B =11488.809053 C =13445.067992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.713 5.713 17 C 0.562 3.438 18 O -0.534 6.534 19 C -0.120 4.120 20 C -0.069 4.069 21 C -0.075 4.075 22 C -0.163 4.163 23 S 0.106 5.894 24 C 0.065 3.935 25 N -0.458 5.458 26 C 0.068 3.932 27 C 0.004 3.996 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.400 0.600 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.206 0.794 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 -3.991 -21.039 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.349 3.651 18 O -0.412 6.412 19 C -0.126 4.126 20 C -0.091 4.091 21 C -0.097 4.097 22 C -0.282 4.282 23 S 0.360 5.640 24 C -0.241 4.241 25 N -0.169 5.169 26 C -0.052 4.052 27 C -0.018 4.018 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.223 0.777 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.405 -3.554 -21.574 26.747 hybrid contribution 0.700 -0.285 1.137 1.366 sum -14.705 -3.839 -20.436 25.468 Atomic orbital electron populations 1.22176 0.95268 1.02078 1.02550 1.21103 0.93712 0.97919 0.83568 0.89058 1.21861 0.96926 1.00779 0.96581 1.21744 0.93592 1.01571 0.99530 1.20645 0.86207 0.96406 0.94207 1.42376 1.00184 1.66292 1.29011 1.19193 0.89437 1.27218 1.01323 0.91275 1.24757 0.96468 1.01223 0.98648 1.69656 1.07266 1.46929 1.34405 0.86259 0.78991 0.78944 0.81948 1.21280 1.21671 1.21263 1.45999 1.66867 1.14157 1.09509 1.17990 0.77705 0.86440 0.82978 1.90797 1.50091 1.15301 1.84985 1.19748 1.04364 0.94392 0.94128 1.21017 0.96243 0.93221 0.98624 1.20006 0.99915 1.00278 0.89519 1.24119 1.06769 0.97950 0.99365 1.84097 1.65396 1.14211 1.00306 1.28140 0.99786 0.92563 1.03595 1.66208 1.14549 1.36157 1.00017 1.19094 1.04028 0.90161 0.91895 1.20751 0.92549 1.00511 0.87953 0.91398 0.92249 0.92472 0.90104 0.91371 0.92073 0.91872 0.96493 0.96599 0.78326 0.93462 0.76377 0.84086 0.84292 0.77721 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.14 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.02 6.26 -4.04 -0.03 2.99 16 7 N -0.73 -18.89 5.60 -59.91 -0.34 -19.23 16 8 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 9 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 12 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 N -0.71 -7.55 4.48 -54.81 -0.25 -7.80 16 17 C 0.56 7.13 7.73 -12.41 -0.10 7.04 16 18 O -0.53 -8.57 15.96 5.29 0.08 -8.48 16 19 C -0.12 -1.34 5.86 -105.15 -0.62 -1.96 16 20 C -0.07 -0.60 9.47 -39.59 -0.37 -0.98 16 21 C -0.07 -0.64 9.99 -39.81 -0.40 -1.04 16 22 C -0.16 -1.60 6.57 -38.37 -0.25 -1.85 16 23 S 0.11 0.76 23.17 -107.50 -2.49 -1.73 16 24 C 0.06 0.49 12.09 51.10 0.62 1.11 16 25 N -0.46 -5.07 10.57 -13.03 -0.14 -5.21 16 26 C 0.07 0.79 6.99 -84.99 -0.59 0.19 16 27 C 0.00 0.05 9.65 -38.51 -0.37 -0.32 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.40 3.35 6.60 -40.82 -0.27 3.08 16 40 H 0.14 0.88 6.37 -52.49 -0.33 0.54 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.15 1.86 7.60 -52.48 -0.40 1.46 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -35.28 376.80 -10.08 -45.36 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.89 Total: 7.54 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.44 Total: -5.73 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.01 Total: -60.15 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.28 -10.08 -45.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700680888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.780 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds