Wall clock time and date at job start Tue Mar 31 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.53001 * 109.47151 * 120.00719 * 2 1 3 5 5 C 1.52999 * 109.47063 * 184.99833 * 4 2 1 6 6 C 1.52999 * 109.47407 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47506 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00196 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38811 * 120.00213 * 180.02562 * 8 7 6 11 11 N 1.31622 * 119.99580 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46973 * 60.00120 * 12 10 8 14 14 H 1.48497 * 109.46846 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47178 * 299.99798 * 12 10 8 16 16 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 17 17 C 1.34777 * 119.99854 * 84.99752 * 16 2 1 18 18 O 1.21583 * 119.99947 * 0.02562 * 17 16 2 19 19 C 1.47662 * 120.00185 * 180.27903 * 17 16 2 20 20 C 1.40165 * 119.85090 * 359.44738 * 19 17 16 21 21 C 1.36215 * 120.07422 * 179.75873 * 20 19 17 22 22 C 1.39584 * 120.43815 * 0.52187 * 21 20 19 23 23 S 1.76146 * 131.53660 * 179.75938 * 22 21 20 24 24 C 1.70625 * 90.85585 * 179.97438 * 23 22 21 25 25 N 1.27847 * 111.58914 * 359.97438 * 24 23 22 26 26 C 1.34741 * 117.84295 * 0.02562 * 25 24 23 27 27 C 1.38715 * 119.85924 * 179.72866 * 19 17 16 28 28 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 29 29 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 30 30 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46960 * 304.99386 * 4 2 1 32 32 H 1.09000 * 109.47563 * 64.99560 * 4 2 1 33 33 H 1.09001 * 109.47390 * 299.99641 * 5 4 2 34 34 H 1.09005 * 109.47602 * 59.99582 * 5 4 2 35 35 H 1.09000 * 109.47132 * 299.99868 * 6 5 4 36 36 H 1.09000 * 109.47048 * 59.99832 * 6 5 4 37 37 H 0.97001 * 119.99859 * 359.97438 * 7 6 5 38 38 H 0.96998 * 119.99396 * 180.02562 * 11 10 8 39 39 H 0.97000 * 120.00410 * 265.00478 * 16 2 1 40 40 H 1.08001 * 119.96036 * 0.02562 * 20 19 17 41 41 H 1.08004 * 119.78438 * 180.28057 * 21 20 19 42 42 H 1.08002 * 124.20531 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.97574 * 359.95154 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0748 -1.3343 2.5630 7 7 5.5349 -1.2315 2.6244 8 6 6.2187 -1.8059 3.6624 9 1 5.6816 -2.3345 4.4361 10 6 7.6022 -1.7081 3.7209 11 7 8.2566 -1.0635 2.7782 12 14 8.5349 -2.4911 5.1373 13 1 8.2778 -3.9536 5.1509 14 1 9.9896 -2.2452 4.9681 15 1 8.0788 -1.8964 6.4192 16 7 2.0183 -0.6906 -1.1962 17 6 2.1469 -0.0182 -2.3572 18 8 1.8582 1.1616 -2.4116 19 6 2.6332 -0.7157 -3.5644 20 6 2.9712 -2.0743 -3.4967 21 6 3.4156 -2.7234 -4.6087 22 6 3.5487 -2.0418 -5.8196 23 16 4.0904 -2.5773 -7.4079 24 6 3.8500 -1.0129 -8.0454 25 7 3.4152 -0.2041 -7.1559 26 6 3.2217 -0.6823 -5.9111 27 6 2.7592 -0.0221 -4.7591 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7717 1.2055 33 1 3.9994 -1.0729 0.4258 34 1 3.8533 0.4368 1.3573 35 1 3.6403 -0.8745 3.4506 36 1 3.7864 -2.3846 2.5197 37 1 6.0174 -0.7571 1.9293 38 1 9.2234 -0.9955 2.8189 39 1 2.2489 -1.6318 -1.1528 40 1 2.8751 -2.6081 -2.5627 41 1 3.6705 -3.7714 -4.5523 42 1 4.0414 -0.7400 -9.0727 43 1 2.5009 1.0256 -4.8047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700680888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:45 Heat of formation + Delta-G solvation = -1.399268 kcal Electronic energy + Delta-G solvation = -24813.388839 eV Core-core repulsion = 21176.938778 eV Total energy + Delta-G solvation = -3636.450061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78628 -40.70480 -38.16131 -37.61999 -36.52414 -34.23206 -32.91482 -32.21731 -31.21449 -30.44032 -27.23001 -26.31081 -25.34774 -24.56944 -23.28240 -22.41207 -21.88982 -21.40550 -19.84190 -19.11283 -18.35024 -17.72416 -17.38172 -16.76693 -16.64208 -16.26037 -15.84910 -15.75471 -15.50592 -15.33889 -15.10940 -15.04143 -14.83822 -14.42545 -14.19365 -13.88723 -13.41941 -13.20083 -13.11925 -13.00321 -12.94790 -12.73044 -12.37736 -12.27524 -12.16635 -12.07551 -11.84487 -11.70538 -11.48914 -11.25474 -11.12395 -10.91144 -10.75093 -10.19122 -9.89212 -9.22016 -8.99555 -7.94842 -5.24132 -0.72201 -0.42234 0.18179 0.61986 1.15995 1.47345 1.50870 1.57063 1.74864 2.02379 2.56614 2.63975 2.97602 3.38781 3.44075 3.57124 3.68915 3.88369 3.98716 4.05700 4.10456 4.13187 4.30309 4.40196 4.45217 4.60128 4.63408 4.69499 4.84552 4.88578 4.91976 4.94823 4.95577 5.02744 5.05620 5.14683 5.33311 5.36388 5.42079 5.44856 5.51802 5.56407 6.27539 6.45108 6.48617 7.12300 7.33031 8.10978 8.32474 9.28775 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.002437 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.959955 B =11488.809053 C =13445.067992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.278 1.278 16 N -0.702 5.702 17 C 0.559 3.441 18 O -0.578 6.578 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.070 4.070 22 C -0.184 4.184 23 S 0.159 5.841 24 C 0.070 3.930 25 N -0.501 5.501 26 C 0.049 3.951 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.019 0.981 36 H 0.029 0.971 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.414 0.586 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.243 0.757 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.158 -6.847 -20.992 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.200 1.200 14 H -0.223 1.223 15 H -0.204 1.204 16 N -0.354 5.354 17 C 0.347 3.653 18 O -0.459 6.459 19 C -0.134 4.134 20 C -0.091 4.091 21 C -0.092 4.092 22 C -0.304 4.304 23 S 0.414 5.586 24 C -0.234 4.234 25 N -0.214 5.214 26 C -0.071 4.071 27 C -0.043 4.043 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.259 0.741 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.114 -6.462 -21.509 27.641 hybrid contribution 0.882 0.568 1.022 1.464 sum -15.231 -5.894 -20.487 26.200 Atomic orbital electron populations 1.22104 0.93573 1.03259 1.02367 1.21045 0.94939 0.96633 0.83552 0.91688 1.21761 0.93472 1.02470 0.96975 1.21614 0.96553 0.99683 0.97424 1.20866 0.83061 0.97541 0.96159 1.42662 1.02612 1.65955 1.28131 1.19645 0.89992 1.26389 1.01809 0.90433 1.25628 0.97582 1.02484 1.01436 1.69827 1.07072 1.48881 1.36527 0.85180 0.77005 0.78479 0.78926 1.20014 1.22270 1.20405 1.45928 1.65994 1.14680 1.08783 1.18285 0.77132 0.86004 0.83857 1.90768 1.52178 1.17238 1.85709 1.19698 1.05080 0.95527 0.93052 1.21284 0.95700 0.92041 1.00083 1.20404 0.98495 1.01522 0.88746 1.24507 1.06844 0.97620 1.01390 1.83886 1.63966 1.12899 0.97830 1.28849 0.97352 0.92674 1.04550 1.66239 1.16936 1.37773 1.00471 1.19205 1.04595 0.91203 0.92070 1.20697 0.94381 0.99996 0.89189 0.90151 0.93920 0.90532 0.88954 0.88869 0.92207 0.93787 0.96315 0.95328 0.79758 0.94044 0.74802 0.81344 0.81253 0.74111 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.14 3.01 2.57 44.99 0.12 3.13 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C -0.11 -2.19 4.75 30.59 0.15 -2.04 16 5 C -0.11 -3.42 5.22 30.59 0.16 -3.27 16 6 C 0.15 5.71 6.26 86.38 0.54 6.25 16 7 N -0.75 -38.54 5.60 -343.45 -1.92 -40.46 16 8 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 12 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 N -0.70 -14.37 4.48 -445.57 -2.00 -16.36 16 17 C 0.56 14.76 7.73 86.73 0.67 15.43 16 18 O -0.58 -19.94 15.96 -3.98 -0.06 -20.00 16 19 C -0.13 -2.95 5.86 -20.21 -0.12 -3.06 16 20 C -0.07 -1.12 9.47 22.27 0.21 -0.91 16 21 C -0.07 -1.05 9.99 22.12 0.22 -0.83 16 22 C -0.18 -3.43 6.57 23.05 0.15 -3.28 16 23 S 0.16 1.94 23.17 -56.49 -1.31 0.64 16 24 C 0.07 0.96 12.09 130.82 1.58 2.54 16 25 N -0.50 -11.27 10.57 -194.91 -2.06 -13.33 16 26 C 0.05 1.17 6.99 39.73 0.28 1.45 16 27 C -0.02 -0.54 9.65 22.96 0.22 -0.32 16 28 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 34 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16 38 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.41 6.07 6.60 -92.71 -0.61 5.46 16 40 H 0.17 1.65 6.37 -2.91 -0.02 1.63 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.24 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.13 3.73 7.60 -2.91 -0.02 3.71 16 Total: -1.00 -78.93 376.80 0.85 -78.08 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.28 Total: 27.50 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.17 Total: -4.08 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.70 Total: -130.28 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.31 Total: 0.64 kcal Total: -78.93 0.85 -78.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700680888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.677 kcal (2) G-P(sol) polarization free energy of solvation -78.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds