Wall clock time and date at job start Tue Mar 31 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46932 * 2 1 4 4 C 1.52997 * 109.47438 * 239.99762 * 2 1 3 5 5 C 1.52999 * 109.47111 * 175.00081 * 4 2 1 6 6 C 1.53006 * 109.46953 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.47117 * 179.97438 * 6 5 4 8 8 C 1.36925 * 119.99944 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00142 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99963 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00304 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47367 * 60.00497 * 12 10 8 14 14 H 1.48505 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47295 * 300.00146 * 12 10 8 16 16 N 1.46502 * 109.47218 * 119.99202 * 2 1 3 17 17 C 1.34774 * 120.00605 * 275.00259 * 16 2 1 18 18 O 1.21550 * 119.99616 * 0.02562 * 17 16 2 19 19 C 1.47871 * 120.00453 * 179.97438 * 17 16 2 20 20 N 1.32462 * 119.74994 * 359.73265 * 19 17 16 21 21 C 1.31759 * 121.98436 * 180.34816 * 20 19 17 22 22 C 1.37675 * 121.49134 * 359.88252 * 21 20 19 23 23 C 1.41114 * 119.39000 * 0.07989 * 22 21 20 24 24 C 1.44984 * 130.46393 * 179.97438 * 23 22 21 25 25 C 1.32010 * 114.84115 * 180.02562 * 24 23 22 26 26 S 1.75339 * 111.45742 * 359.97438 * 25 24 23 27 27 C 1.40251 * 117.63636 * 359.97438 * 23 22 21 28 28 H 1.09005 * 109.46622 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47525 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47041 * 60.00728 * 1 2 3 31 31 H 1.09003 * 109.46919 * 294.99750 * 4 2 1 32 32 H 1.09000 * 109.47154 * 54.99543 * 4 2 1 33 33 H 1.09003 * 109.46958 * 299.99644 * 5 4 2 34 34 H 1.09000 * 109.47551 * 59.99705 * 5 4 2 35 35 H 1.08995 * 109.47058 * 299.99996 * 6 5 4 36 36 H 1.08994 * 109.47065 * 60.00201 * 6 5 4 37 37 H 0.97006 * 119.99685 * 0.02562 * 7 6 5 38 38 H 0.97001 * 120.00521 * 179.97438 * 11 10 8 39 39 H 0.97008 * 119.99826 * 95.00459 * 16 2 1 40 40 H 1.08001 * 119.25665 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.30320 * 180.02562 * 22 21 20 42 42 H 1.07999 * 122.57999 * 0.02562 * 24 23 22 43 43 H 1.08003 * 124.26444 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8043 -3.6632 9 1 5.6816 -2.3334 -4.4366 10 6 7.6021 -1.7063 -3.7217 11 7 8.2566 -1.0611 -2.7795 12 14 8.5350 -2.4902 -5.1376 13 1 8.0789 -1.8963 -6.4200 14 1 9.9898 -2.2451 -4.9679 15 1 8.2781 -3.9527 -5.1503 16 7 2.0183 -0.6904 1.1963 17 6 2.1471 -0.0181 2.3572 18 8 1.8575 1.1612 2.4118 19 6 2.6395 -0.7151 3.5648 20 7 2.9476 -2.0019 3.5013 21 6 3.3836 -2.6678 4.5513 22 6 3.5445 -2.0567 5.7744 23 6 3.2347 -0.6867 5.9102 24 6 3.3120 0.1854 7.0658 25 6 2.9409 1.4329 6.8450 26 16 2.4530 1.6714 5.1779 27 6 2.7721 -0.0085 4.7731 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9995 -1.0727 -0.4258 35 1 3.7865 -2.3843 -2.5199 36 1 3.6403 -0.8742 -3.4506 37 1 6.0173 -0.7552 -1.9303 38 1 9.2233 -0.9929 -2.8202 39 1 2.2491 -1.6317 1.1528 40 1 3.6216 -3.7163 4.4498 41 1 3.9037 -2.6209 6.6224 42 1 3.6474 -0.1590 8.0329 43 1 2.9390 2.2088 7.5963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700683893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:18 Heat of formation + Delta-G solvation = 21.559927 kcal Electronic energy + Delta-G solvation = -25090.347640 eV Core-core repulsion = 21454.893164 eV Total energy + Delta-G solvation = -3635.454476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92321 -39.45681 -36.77791 -36.34375 -34.81002 -32.70890 -31.94076 -30.79837 -30.62971 -29.32129 -25.73712 -25.06067 -24.64602 -22.98994 -21.94891 -21.09603 -20.73212 -20.46010 -18.58614 -17.67097 -16.98076 -16.91315 -16.22563 -15.50613 -15.34785 -15.06782 -14.66131 -14.57352 -14.40759 -14.30261 -14.01859 -13.67097 -13.41886 -12.98344 -12.96865 -12.68495 -12.43692 -12.30580 -12.10160 -12.05011 -11.27927 -11.17222 -11.10670 -10.80718 -10.76369 -10.44192 -10.39099 -10.30319 -10.16905 -9.99977 -9.90967 -9.64012 -9.48454 -9.12705 -8.81674 -8.11254 -6.86516 -5.71224 -2.99803 0.05103 0.46427 1.17398 1.72434 1.78082 2.62969 2.95035 3.47094 3.50844 3.52400 3.53573 3.89668 4.08921 4.33822 4.49312 4.60720 4.78309 4.83242 4.99653 5.05092 5.07837 5.13125 5.20216 5.39844 5.46867 5.59860 5.62282 5.64792 5.66651 5.81901 5.84870 5.99471 6.10101 6.10768 6.16675 6.25866 6.41075 6.47156 6.47583 6.92904 6.96186 7.25888 7.54683 7.73548 8.05794 8.47796 9.58327 10.18090 10.52460 11.51768 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002526 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.277547 B =11081.906771 C =12152.863895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.069 0.931 10 C -0.016 4.016 11 N -0.935 5.935 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.695 5.695 17 C 0.568 3.432 18 O -0.528 6.528 19 C 0.132 3.868 20 N -0.440 5.440 21 C 0.084 3.916 22 C -0.107 4.107 23 C -0.047 4.047 24 C -0.131 4.131 25 C -0.202 4.202 26 S 0.192 5.808 27 C -0.164 4.164 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.412 0.588 40 H 0.170 0.830 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 1.121 22.264 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.026 3.974 7 N -0.378 5.378 8 C -0.370 4.370 9 H 0.087 0.913 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.346 5.346 17 C 0.352 3.648 18 O -0.405 6.405 19 C -0.018 4.018 20 N -0.152 5.152 21 C -0.071 4.071 22 C -0.129 4.129 23 C -0.063 4.063 24 C -0.161 4.161 25 C -0.337 4.337 26 S 0.456 5.544 27 C -0.284 4.284 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.249 0.751 40 H 0.187 0.813 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.295 2.716 20.560 27.003 hybrid contribution 1.631 -1.652 1.151 2.591 sum -15.664 1.064 21.711 26.793 Atomic orbital electron populations 1.22171 0.95199 1.02152 1.02487 1.21150 0.93781 0.97878 0.83677 0.89064 1.21849 0.96941 1.00888 0.96395 1.21744 0.93629 1.01444 0.99649 1.20643 0.86158 0.96466 0.94150 1.42380 1.00239 1.66237 1.28994 1.19202 0.89450 1.27095 1.01266 0.91270 1.24752 0.96453 1.01292 0.98662 1.69656 1.07214 1.47008 1.34455 0.86259 0.78968 0.78969 0.81945 1.21282 1.21699 1.21295 1.45910 1.65061 1.14862 1.08763 1.17724 0.78160 0.86099 0.82784 1.90769 1.50631 1.14792 1.84309 1.20608 0.99331 0.90070 0.91806 1.67581 1.09086 1.06525 1.31976 1.22527 0.96525 1.00532 0.87533 1.22149 0.98396 0.92718 0.99605 1.19517 0.99731 0.94736 0.92282 1.20783 1.04418 0.92439 0.98431 1.25770 1.04469 1.00784 1.02707 1.85036 1.66373 1.03170 0.99819 1.23669 1.06569 1.00619 0.97520 0.92414 0.92299 0.91346 0.91268 0.90111 0.91971 0.91953 0.96531 0.96512 0.78338 0.93507 0.75106 0.81330 0.83698 0.83338 0.81049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.69 2.57 -67.93 -0.17 1.51 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.12 -1.52 4.75 -26.73 -0.13 -1.65 16 5 C -0.13 -2.11 5.22 -26.73 -0.14 -2.25 16 6 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 7 N -0.73 -19.51 5.60 -59.91 -0.34 -19.84 16 8 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 9 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 12 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 N -0.69 -8.87 4.52 -54.74 -0.25 -9.12 16 17 C 0.57 8.17 7.77 -12.32 -0.10 8.08 16 18 O -0.53 -8.53 14.69 5.32 0.08 -8.45 16 19 C 0.13 1.77 6.78 -82.76 -0.56 1.21 16 20 N -0.44 -5.35 9.51 -9.79 -0.09 -5.45 16 21 C 0.08 0.78 11.12 -17.79 -0.20 0.58 16 22 C -0.11 -0.89 10.18 -38.70 -0.39 -1.28 16 23 C -0.05 -0.47 6.09 -105.38 -0.64 -1.12 16 24 C -0.13 -1.04 10.39 -38.83 -0.40 -1.44 16 25 C -0.20 -1.59 11.02 28.82 0.32 -1.27 16 26 S 0.19 2.12 21.43 -107.50 -2.30 -0.18 16 27 C -0.16 -2.05 6.33 -37.93 -0.24 -2.29 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.08 7.75 -51.93 -0.40 0.68 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.41 4.96 7.93 -40.82 -0.32 4.63 16 40 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -34.74 377.57 -10.14 -44.88 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.05 Total: 8.73 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.58 Total: -5.73 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.05 Total: -62.84 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.30 Total: -0.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.74 -10.14 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700683893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.443 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds