Wall clock time and date at job start Tue Mar 31 2020 18:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46932 * 2 1 4 4 C 1.52997 * 109.47438 * 239.99762 * 2 1 3 5 5 C 1.52999 * 109.47111 * 175.00081 * 4 2 1 6 6 C 1.53006 * 109.46953 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.47117 * 179.97438 * 6 5 4 8 8 C 1.36925 * 119.99944 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00142 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99963 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00304 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47367 * 60.00497 * 12 10 8 14 14 H 1.48505 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47295 * 300.00146 * 12 10 8 16 16 N 1.46502 * 109.47218 * 119.99202 * 2 1 3 17 17 C 1.34774 * 120.00605 * 275.00259 * 16 2 1 18 18 O 1.21550 * 119.99616 * 0.02562 * 17 16 2 19 19 C 1.47871 * 120.00453 * 179.97438 * 17 16 2 20 20 N 1.32462 * 119.74994 * 359.73265 * 19 17 16 21 21 C 1.31759 * 121.98436 * 180.34816 * 20 19 17 22 22 C 1.37675 * 121.49134 * 359.88252 * 21 20 19 23 23 C 1.41114 * 119.39000 * 0.07989 * 22 21 20 24 24 C 1.44984 * 130.46393 * 179.97438 * 23 22 21 25 25 C 1.32010 * 114.84115 * 180.02562 * 24 23 22 26 26 S 1.75339 * 111.45742 * 359.97438 * 25 24 23 27 27 C 1.40251 * 117.63636 * 359.97438 * 23 22 21 28 28 H 1.09005 * 109.46622 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47525 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47041 * 60.00728 * 1 2 3 31 31 H 1.09003 * 109.46919 * 294.99750 * 4 2 1 32 32 H 1.09000 * 109.47154 * 54.99543 * 4 2 1 33 33 H 1.09003 * 109.46958 * 299.99644 * 5 4 2 34 34 H 1.09000 * 109.47551 * 59.99705 * 5 4 2 35 35 H 1.08995 * 109.47058 * 299.99996 * 6 5 4 36 36 H 1.08994 * 109.47065 * 60.00201 * 6 5 4 37 37 H 0.97006 * 119.99685 * 0.02562 * 7 6 5 38 38 H 0.97001 * 120.00521 * 179.97438 * 11 10 8 39 39 H 0.97008 * 119.99826 * 95.00459 * 16 2 1 40 40 H 1.08001 * 119.25665 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.30320 * 180.02562 * 22 21 20 42 42 H 1.07999 * 122.57999 * 0.02562 * 24 23 22 43 43 H 1.08003 * 124.26444 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8043 -3.6632 9 1 5.6816 -2.3334 -4.4366 10 6 7.6021 -1.7063 -3.7217 11 7 8.2566 -1.0611 -2.7795 12 14 8.5350 -2.4902 -5.1376 13 1 8.0789 -1.8963 -6.4200 14 1 9.9898 -2.2451 -4.9679 15 1 8.2781 -3.9527 -5.1503 16 7 2.0183 -0.6904 1.1963 17 6 2.1471 -0.0181 2.3572 18 8 1.8575 1.1612 2.4118 19 6 2.6395 -0.7151 3.5648 20 7 2.9476 -2.0019 3.5013 21 6 3.3836 -2.6678 4.5513 22 6 3.5445 -2.0567 5.7744 23 6 3.2347 -0.6867 5.9102 24 6 3.3120 0.1854 7.0658 25 6 2.9409 1.4329 6.8450 26 16 2.4530 1.6714 5.1779 27 6 2.7721 -0.0085 4.7731 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9995 -1.0727 -0.4258 35 1 3.7865 -2.3843 -2.5199 36 1 3.6403 -0.8742 -3.4506 37 1 6.0173 -0.7552 -1.9303 38 1 9.2233 -0.9929 -2.8202 39 1 2.2491 -1.6317 1.1528 40 1 3.6216 -3.7163 4.4498 41 1 3.9037 -2.6209 6.6224 42 1 3.6474 -0.1590 8.0329 43 1 2.9390 2.2088 7.5963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700683893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:17 Heat of formation + Delta-G solvation = -1.576647 kcal Electronic energy + Delta-G solvation = -25091.350917 eV Core-core repulsion = 21454.893164 eV Total energy + Delta-G solvation = -3636.457753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77790 -40.41361 -38.01097 -37.05711 -36.54212 -34.23486 -33.10894 -32.06689 -31.38085 -30.76559 -27.26578 -26.05524 -25.36999 -24.74421 -22.86376 -22.36699 -21.89552 -21.44434 -19.41467 -19.12384 -18.54186 -17.72913 -17.20221 -16.68718 -16.47341 -16.13122 -15.87465 -15.74957 -15.45611 -15.31848 -15.12742 -15.06702 -14.91345 -14.43707 -13.86512 -13.63146 -13.46349 -13.23408 -13.17889 -13.04691 -12.88872 -12.74086 -12.42118 -12.29375 -12.11113 -11.97840 -11.86363 -11.71016 -11.52341 -11.23216 -10.94727 -10.93097 -10.81970 -10.22209 -10.17105 -9.01970 -8.90779 -7.95996 -5.25954 -0.71714 -0.32006 0.40113 1.02772 1.08878 1.46024 1.50215 1.56343 1.72346 1.99989 2.55510 2.69403 3.05765 3.37233 3.45232 3.58320 3.64002 3.73726 3.94966 4.08761 4.17846 4.26438 4.29677 4.38771 4.42649 4.54289 4.56799 4.66034 4.78848 4.81222 4.84544 4.89539 4.96986 5.01720 5.09289 5.23049 5.29179 5.33442 5.41062 5.43613 5.48880 5.51521 6.25885 6.31553 6.67060 7.03865 7.31094 8.08026 8.30650 9.27780 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002526 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.277547 B =11081.906771 C =12152.863895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.151 3.849 7 N -0.751 5.751 8 C -0.249 4.249 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.978 3.022 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.275 1.275 16 N -0.691 5.691 17 C 0.561 3.439 18 O -0.557 6.557 19 C 0.098 3.902 20 N -0.455 5.455 21 C 0.072 3.928 22 C -0.088 4.088 23 C -0.060 4.060 24 C -0.126 4.126 25 C -0.190 4.190 26 S 0.130 5.870 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.415 0.585 40 H 0.201 0.799 41 H 0.189 0.811 42 H 0.187 0.813 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 -0.733 23.353 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.380 4.380 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.806 3.194 13 H -0.202 1.202 14 H -0.221 1.221 15 H -0.201 1.201 16 N -0.342 5.342 17 C 0.346 3.654 18 O -0.436 6.436 19 C -0.050 4.050 20 N -0.168 5.168 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.076 4.076 24 C -0.155 4.155 25 C -0.325 4.325 26 S 0.394 5.606 27 C -0.304 4.304 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.218 0.782 41 H 0.206 0.794 42 H 0.204 0.796 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.806 0.843 21.632 28.031 hybrid contribution 1.761 -1.136 0.908 2.284 sum -16.046 -0.292 22.540 27.670 Atomic orbital electron populations 1.22090 0.93329 1.03054 1.02624 1.21127 0.95141 0.96681 0.83363 0.91154 1.21757 0.93515 1.02237 0.97151 1.21591 0.96580 0.99720 0.97242 1.20845 0.83183 0.97364 0.96100 1.42662 1.02566 1.65966 1.28183 1.19658 0.90075 1.26516 1.01776 0.90408 1.25664 0.97525 1.02433 1.01550 1.69834 1.07100 1.48837 1.36606 0.85143 0.76987 0.78408 0.78816 1.20225 1.22108 1.20090 1.45926 1.64745 1.14921 1.08619 1.18049 0.77857 0.85962 0.83558 1.90738 1.51994 1.15933 1.84927 1.20476 1.01780 0.90924 0.91855 1.67538 1.09554 1.06132 1.33561 1.23190 0.95936 1.01852 0.87416 1.22645 0.95839 0.92000 1.00441 1.20051 0.99430 0.95844 0.92303 1.21163 1.03479 0.91834 0.99040 1.26036 1.03827 1.01868 1.00742 1.85153 1.67914 1.04036 1.03517 1.23864 1.07361 1.00920 0.98218 0.91066 0.93706 0.89651 0.89514 0.88415 0.93457 0.93072 0.95698 0.95904 0.79830 0.93990 0.74721 0.78211 0.79406 0.79550 0.77858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.48 71.98 0.68 -2.37 16 2 C 0.14 3.45 2.57 44.99 0.12 3.56 16 3 H 0.07 2.03 7.58 -2.39 -0.02 2.02 16 4 C -0.11 -2.58 4.75 30.59 0.15 -2.43 16 5 C -0.11 -3.80 5.22 30.60 0.16 -3.64 16 6 C 0.15 6.20 6.26 86.38 0.54 6.75 16 7 N -0.75 -40.40 5.60 -343.45 -1.92 -42.32 16 8 C -0.25 -14.42 9.99 84.04 0.84 -13.58 16 9 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 10 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 11 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 12 Si 0.98 47.12 29.55 68.60 2.03 49.14 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 16 N -0.69 -18.32 4.52 -445.39 -2.01 -20.33 16 17 C 0.56 17.21 7.77 86.79 0.67 17.88 16 18 O -0.56 -19.48 14.69 -3.87 -0.06 -19.54 16 19 C 0.10 2.76 6.78 42.18 0.29 3.05 16 20 N -0.46 -11.13 9.51 -184.87 -1.76 -12.88 16 21 C 0.07 1.21 11.12 84.57 0.94 2.15 16 22 C -0.09 -1.22 10.18 22.84 0.23 -0.99 16 23 C -0.06 -1.13 6.09 -20.36 -0.12 -1.25 16 24 C -0.13 -1.67 10.39 23.09 0.24 -1.43 16 25 C -0.19 -2.71 11.02 66.91 0.74 -1.97 16 26 S 0.13 3.05 21.43 -56.49 -1.21 1.84 16 27 C -0.18 -4.72 6.33 23.34 0.15 -4.58 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.82 7.75 -2.39 -0.02 1.80 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.37 21.42 7.67 -92.70 -0.71 20.70 16 38 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.42 10.22 7.93 -92.70 -0.73 9.48 16 40 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -78.19 377.57 1.03 -77.16 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.40 Total: 31.55 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 6.08 Total: -3.12 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -5.41 Total: -137.04 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.21 Total: 1.84 kcal Total: -78.19 1.03 -77.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700683893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.587 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds