Wall clock time and date at job start Tue Mar 31 2020 18:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47327 * 2 1 4 4 C 1.52998 * 109.47292 * 120.00029 * 2 1 3 5 5 C 1.52998 * 109.47072 * 184.99988 * 4 2 1 6 6 C 1.53007 * 109.46975 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46946 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99744 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99981 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00144 * 180.02562 * 8 7 6 11 11 N 1.31623 * 120.00183 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99688 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47102 * 90.00619 * 12 10 8 14 14 H 1.48498 * 109.47026 * 210.00451 * 12 10 8 15 15 H 1.48500 * 109.47329 * 330.00027 * 12 10 8 16 16 N 1.46506 * 109.47232 * 240.00360 * 2 1 3 17 17 C 1.34777 * 120.00268 * 85.00054 * 16 2 1 18 18 O 1.21552 * 119.99899 * 0.27240 * 17 16 2 19 19 C 1.47876 * 119.99826 * 180.02562 * 17 16 2 20 20 N 1.32458 * 119.75063 * 359.72242 * 19 17 16 21 21 C 1.31762 * 121.97872 * 179.71071 * 20 19 17 22 22 C 1.37681 * 121.49237 * 0.59364 * 21 20 19 23 23 C 1.41104 * 119.38976 * 359.69832 * 22 21 20 24 24 C 1.44983 * 130.46751 * 179.97438 * 23 22 21 25 25 C 1.32006 * 114.84643 * 180.02562 * 24 23 22 26 26 S 1.75341 * 111.45796 * 0.02562 * 25 24 23 27 27 C 1.40262 * 117.63724 * 0.02562 * 23 22 21 28 28 H 1.09001 * 109.47093 * 59.99820 * 1 2 3 29 29 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47121 * 300.00033 * 1 2 3 31 31 H 1.09000 * 109.47285 * 305.00001 * 4 2 1 32 32 H 1.09002 * 109.46995 * 65.00184 * 4 2 1 33 33 H 1.09001 * 109.47625 * 299.99611 * 5 4 2 34 34 H 1.08999 * 109.47666 * 60.00637 * 5 4 2 35 35 H 1.09000 * 109.46715 * 299.99636 * 6 5 4 36 36 H 1.08991 * 109.47135 * 59.99699 * 6 5 4 37 37 H 0.96993 * 120.00371 * 0.02562 * 7 6 5 38 38 H 0.96998 * 119.99907 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99689 * 265.00171 * 16 2 1 40 40 H 1.08001 * 119.25699 * 180.32029 * 21 20 19 41 41 H 1.08002 * 120.30588 * 179.68211 * 22 21 20 42 42 H 1.08006 * 122.57610 * 359.97438 * 24 23 22 43 43 H 1.08002 * 124.27127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5350 -1.2322 2.6239 8 6 6.2188 -1.8065 3.6620 9 1 5.6817 -2.3350 4.4358 10 6 7.6023 -1.7086 3.7205 11 7 8.2596 -2.2611 4.7181 12 14 8.5312 -0.7940 2.3826 13 1 8.6625 0.6361 2.7603 14 1 9.8820 -1.3896 2.2222 15 1 7.7876 -0.9016 1.1016 16 7 2.0184 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8627 1.1624 -2.4105 19 6 2.6395 -0.7154 -3.5647 20 7 2.9579 -1.9995 -3.4984 21 6 3.3954 -2.6651 -4.5480 22 6 3.5565 -2.0540 -5.7712 23 6 3.2407 -0.6856 -5.9086 24 6 3.3178 0.1864 -7.0643 25 6 2.9411 1.4325 -6.8451 26 16 2.4476 1.6697 -5.1794 27 6 2.7722 -0.0088 -4.7730 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4259 34 1 3.8533 0.4370 1.3574 35 1 3.6403 -0.8759 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 6.0173 -0.7567 1.9296 38 1 9.2263 -2.1930 4.7587 39 1 2.2490 -1.6317 -1.1527 40 1 3.6373 -3.7126 -4.4455 41 1 3.9214 -2.6167 -6.6177 42 1 3.6580 -0.1569 -8.0302 43 1 2.9381 2.2081 -7.5966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700683894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:22 Heat of formation + Delta-G solvation = 25.422738 kcal Electronic energy + Delta-G solvation = -25195.089666 eV Core-core repulsion = 21559.802694 eV Total energy + Delta-G solvation = -3635.286972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99966 -39.53787 -36.89056 -36.41496 -35.00715 -32.76890 -32.00436 -30.98072 -30.71347 -29.70296 -25.96413 -25.16137 -24.71685 -22.75490 -21.95765 -21.09984 -20.91782 -20.53749 -18.65727 -17.74555 -17.47245 -16.99733 -16.30506 -15.58643 -15.42272 -15.13743 -14.70971 -14.59028 -14.49155 -14.41860 -14.06359 -13.87104 -13.57427 -13.04896 -12.96329 -12.65108 -12.50527 -12.36900 -12.18349 -12.16169 -11.68980 -11.29223 -11.20567 -10.93554 -10.88605 -10.50684 -10.39960 -10.38180 -10.24278 -10.08279 -9.99014 -9.55898 -9.55486 -9.21568 -8.85376 -8.18423 -7.18767 -5.73693 -3.08550 -0.02238 0.39006 1.10317 1.65413 1.71071 2.55061 2.86838 3.40591 3.44346 3.45767 3.47714 3.81958 4.02097 4.26651 4.42014 4.62536 4.64574 4.76481 4.91864 4.97043 4.99894 5.05932 5.11134 5.33254 5.38291 5.44815 5.56137 5.57016 5.58375 5.71510 5.77765 5.87501 5.95903 6.02814 6.04666 6.12915 6.14600 6.33665 6.39134 6.79705 6.83257 7.17861 7.46604 7.97423 8.03312 8.45866 9.25384 9.98161 10.18405 11.44918 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002843 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.603931 B = 9846.150462 C =10997.176586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.243 4.243 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 N -0.696 5.696 17 C 0.568 3.432 18 O -0.528 6.528 19 C 0.131 3.869 20 N -0.440 5.440 21 C 0.083 3.917 22 C -0.107 4.107 23 C -0.046 4.046 24 C -0.131 4.131 25 C -0.201 4.201 26 S 0.191 5.809 27 C -0.165 4.165 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.412 0.588 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.774 3.818 -26.671 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.372 4.372 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.584 5.584 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.347 5.347 17 C 0.352 3.648 18 O -0.404 6.404 19 C -0.019 4.019 20 N -0.152 5.152 21 C -0.071 4.071 22 C -0.128 4.128 23 C -0.062 4.062 24 C -0.161 4.161 25 C -0.337 4.337 26 S 0.456 5.544 27 C -0.284 4.284 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.249 0.751 40 H 0.187 0.813 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.549 5.371 -24.903 30.935 hybrid contribution 1.683 -0.776 -2.582 3.178 sum -15.865 4.595 -27.485 32.066 Atomic orbital electron populations 1.22169 0.95075 1.02236 1.02541 1.21159 0.93915 0.97823 0.83627 0.89075 1.21840 0.96575 1.01122 0.96534 1.21799 0.94161 1.01336 0.99608 1.20623 0.84822 0.97119 0.94404 1.42740 1.01775 1.67145 1.28691 1.19083 0.89927 1.27444 1.00792 0.89228 1.24675 0.96183 1.00619 0.97816 1.69706 1.07275 1.49450 1.31966 0.86540 0.79613 0.79990 0.82371 1.21061 1.21713 1.20397 1.45924 1.65110 1.14890 1.08770 1.17734 0.78164 0.86125 0.82782 1.90773 1.50683 1.14680 1.84309 1.20606 0.99392 0.90121 0.91808 1.67582 1.09037 1.06534 1.32052 1.22536 0.96557 1.00522 0.87527 1.22159 0.98330 0.92727 0.99605 1.19521 0.99681 0.94751 0.92290 1.20790 1.04381 0.92448 0.98447 1.25772 1.04405 1.00812 1.02698 1.85040 1.66200 1.03246 0.99935 1.23678 1.06533 1.00653 0.97555 0.92289 0.92344 0.91279 0.89893 0.91060 0.92020 0.91997 0.95606 0.95673 0.80737 0.93102 0.75091 0.81294 0.83658 0.83300 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 2 C 0.14 1.58 2.58 -67.93 -0.18 1.40 16 3 H 0.09 1.17 7.57 -51.92 -0.39 0.78 16 4 C -0.12 -1.41 4.75 -26.73 -0.13 -1.54 16 5 C -0.13 -2.01 5.22 -26.73 -0.14 -2.15 16 6 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 7 N -0.76 -18.79 5.41 -59.91 -0.32 -19.12 16 8 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 9 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 10 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 11 N -0.94 -30.03 13.97 55.49 0.78 -29.26 16 12 Si 0.88 22.86 27.73 -169.99 -4.71 18.14 16 13 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 16 N -0.70 -8.35 4.52 -54.74 -0.25 -8.60 16 17 C 0.57 7.76 7.77 -12.32 -0.10 7.66 16 18 O -0.53 -8.15 14.69 5.32 0.08 -8.07 16 19 C 0.13 1.67 6.78 -82.76 -0.56 1.11 16 20 N -0.44 -5.08 9.51 -9.78 -0.09 -5.17 16 21 C 0.08 0.73 11.12 -17.79 -0.20 0.53 16 22 C -0.11 -0.83 10.18 -38.70 -0.39 -1.22 16 23 C -0.05 -0.45 6.09 -105.38 -0.64 -1.09 16 24 C -0.13 -0.98 10.39 -38.83 -0.40 -1.38 16 25 C -0.20 -1.49 11.02 28.82 0.32 -1.18 16 26 S 0.19 2.02 21.43 -107.50 -2.30 -0.29 16 27 C -0.16 -1.96 6.33 -37.93 -0.24 -2.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.36 8.79 5.53 -40.82 -0.23 8.56 16 38 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 39 H 0.41 4.63 7.93 -40.82 -0.32 4.31 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -35.43 374.46 -9.78 -45.21 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.01 Total: 7.00 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.58 Total: -5.49 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.11 Total: -62.15 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.71 Total: 18.14 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.30 Total: -0.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.43 -9.78 -45.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700683894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.634 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds