Wall clock time and date at job start Tue Mar 31 2020 18:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47327 * 2 1 4 4 C 1.52998 * 109.47292 * 120.00029 * 2 1 3 5 5 C 1.52998 * 109.47072 * 184.99988 * 4 2 1 6 6 C 1.53007 * 109.46975 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46946 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99744 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99981 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00144 * 180.02562 * 8 7 6 11 11 N 1.31623 * 120.00183 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99688 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47102 * 90.00619 * 12 10 8 14 14 H 1.48498 * 109.47026 * 210.00451 * 12 10 8 15 15 H 1.48500 * 109.47329 * 330.00027 * 12 10 8 16 16 N 1.46506 * 109.47232 * 240.00360 * 2 1 3 17 17 C 1.34777 * 120.00268 * 85.00054 * 16 2 1 18 18 O 1.21552 * 119.99899 * 0.27240 * 17 16 2 19 19 C 1.47876 * 119.99826 * 180.02562 * 17 16 2 20 20 N 1.32458 * 119.75063 * 359.72242 * 19 17 16 21 21 C 1.31762 * 121.97872 * 179.71071 * 20 19 17 22 22 C 1.37681 * 121.49237 * 0.59364 * 21 20 19 23 23 C 1.41104 * 119.38976 * 359.69832 * 22 21 20 24 24 C 1.44983 * 130.46751 * 179.97438 * 23 22 21 25 25 C 1.32006 * 114.84643 * 180.02562 * 24 23 22 26 26 S 1.75341 * 111.45796 * 0.02562 * 25 24 23 27 27 C 1.40262 * 117.63724 * 0.02562 * 23 22 21 28 28 H 1.09001 * 109.47093 * 59.99820 * 1 2 3 29 29 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47121 * 300.00033 * 1 2 3 31 31 H 1.09000 * 109.47285 * 305.00001 * 4 2 1 32 32 H 1.09002 * 109.46995 * 65.00184 * 4 2 1 33 33 H 1.09001 * 109.47625 * 299.99611 * 5 4 2 34 34 H 1.08999 * 109.47666 * 60.00637 * 5 4 2 35 35 H 1.09000 * 109.46715 * 299.99636 * 6 5 4 36 36 H 1.08991 * 109.47135 * 59.99699 * 6 5 4 37 37 H 0.96993 * 120.00371 * 0.02562 * 7 6 5 38 38 H 0.96998 * 119.99907 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99689 * 265.00171 * 16 2 1 40 40 H 1.08001 * 119.25699 * 180.32029 * 21 20 19 41 41 H 1.08002 * 120.30588 * 179.68211 * 22 21 20 42 42 H 1.08006 * 122.57610 * 359.97438 * 24 23 22 43 43 H 1.08002 * 124.27127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5350 -1.2322 2.6239 8 6 6.2188 -1.8065 3.6620 9 1 5.6817 -2.3350 4.4358 10 6 7.6023 -1.7086 3.7205 11 7 8.2596 -2.2611 4.7181 12 14 8.5312 -0.7940 2.3826 13 1 8.6625 0.6361 2.7603 14 1 9.8820 -1.3896 2.2222 15 1 7.7876 -0.9016 1.1016 16 7 2.0184 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8627 1.1624 -2.4105 19 6 2.6395 -0.7154 -3.5647 20 7 2.9579 -1.9995 -3.4984 21 6 3.3954 -2.6651 -4.5480 22 6 3.5565 -2.0540 -5.7712 23 6 3.2407 -0.6856 -5.9086 24 6 3.3178 0.1864 -7.0643 25 6 2.9411 1.4325 -6.8451 26 16 2.4476 1.6697 -5.1794 27 6 2.7722 -0.0088 -4.7730 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4259 34 1 3.8533 0.4370 1.3574 35 1 3.6403 -0.8759 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 6.0173 -0.7567 1.9296 38 1 9.2263 -2.1930 4.7587 39 1 2.2490 -1.6317 -1.1527 40 1 3.6373 -3.7126 -4.4455 41 1 3.9214 -2.6167 -6.6177 42 1 3.6580 -0.1569 -8.0302 43 1 2.9381 2.2081 -7.5966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700683894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:21 Heat of formation + Delta-G solvation = 1.374499 kcal Electronic energy + Delta-G solvation = -25196.132476 eV Core-core repulsion = 21559.802694 eV Total energy + Delta-G solvation = -3636.329782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78666 -40.42147 -38.07128 -37.06754 -36.66678 -34.27840 -33.22319 -32.28465 -31.39515 -30.97822 -27.40801 -26.04891 -25.37925 -24.41774 -22.85736 -22.48735 -21.90446 -21.44796 -19.64268 -19.40769 -18.55128 -17.73695 -17.20606 -16.65494 -16.49516 -16.15267 -15.92404 -15.79198 -15.72918 -15.22120 -15.10537 -15.04520 -14.85455 -14.56641 -13.91048 -13.64252 -13.59889 -13.52520 -13.21086 -13.12940 -12.89844 -12.86724 -12.53257 -12.14356 -12.06230 -11.99189 -11.88662 -11.74556 -11.57305 -11.24000 -10.99476 -10.95719 -10.82972 -10.23216 -10.17865 -9.31832 -8.91739 -8.05681 -5.38836 -0.72745 -0.33130 0.39177 1.01502 1.07738 1.34695 1.37404 1.44735 1.71519 1.99063 2.45132 2.68376 3.04894 3.25712 3.43957 3.47744 3.60193 3.72399 3.84413 4.07476 4.13785 4.17121 4.28368 4.37674 4.41652 4.52881 4.54229 4.61637 4.77985 4.80298 4.82943 4.87277 4.96514 5.00980 5.09101 5.21811 5.28758 5.31143 5.39558 5.42487 5.50712 5.73312 6.19217 6.31056 6.66110 7.03374 7.05151 7.82497 8.00498 9.15985 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002843 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.603931 B = 9846.150462 C =10997.176586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.153 3.847 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.059 0.941 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.955 3.045 13 H -0.278 1.278 14 H -0.291 1.291 15 H -0.258 1.258 16 N -0.692 5.692 17 C 0.561 3.439 18 O -0.556 6.556 19 C 0.099 3.901 20 N -0.455 5.455 21 C 0.072 3.928 22 C -0.089 4.089 23 C -0.060 4.060 24 C -0.127 4.127 25 C -0.190 4.190 26 S 0.132 5.868 27 C -0.184 4.184 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.363 0.637 38 H 0.259 0.741 39 H 0.416 0.584 40 H 0.201 0.799 41 H 0.188 0.812 42 H 0.186 0.814 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.003 3.393 -29.885 34.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.027 3.973 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.077 0.923 10 C -0.255 4.255 11 N -0.633 5.633 12 Si 0.782 3.218 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.183 1.183 16 N -0.343 5.343 17 C 0.346 3.654 18 O -0.435 6.435 19 C -0.050 4.050 20 N -0.167 5.167 21 C -0.083 4.083 22 C -0.110 4.110 23 C -0.076 4.076 24 C -0.156 4.156 25 C -0.325 4.325 26 S 0.395 5.605 27 C -0.304 4.304 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.196 0.804 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.218 0.782 41 H 0.205 0.795 42 H 0.204 0.796 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.830 4.947 -28.134 33.674 hybrid contribution 1.710 -0.753 -1.600 2.460 sum -16.120 4.194 -29.734 34.082 Atomic orbital electron populations 1.22097 0.93545 1.02987 1.02599 1.21127 0.95028 0.96805 0.83301 0.90806 1.21760 0.93643 1.02285 0.97190 1.21662 0.96701 1.00179 0.97076 1.20837 0.82051 0.97852 0.96536 1.42817 1.03826 1.66718 1.27540 1.19088 0.90238 1.26422 1.00970 0.92314 1.25503 0.97264 1.02223 1.00532 1.69878 1.07538 1.51551 1.34373 0.85413 0.77942 0.78474 0.79975 1.20439 1.21765 1.18268 1.45936 1.64761 1.14960 1.08599 1.18035 0.77865 0.85975 0.83516 1.90745 1.52024 1.15821 1.84901 1.20483 1.01717 0.90939 0.91854 1.67546 1.09475 1.06135 1.33579 1.23183 0.95955 1.01807 0.87401 1.22643 0.95894 0.92012 1.00429 1.20037 0.99406 0.95834 0.92309 1.21164 1.03488 0.91873 0.99054 1.26033 1.03789 1.01868 1.00831 1.85154 1.67706 1.04106 1.03491 1.23871 1.07323 1.00927 0.98259 0.93722 0.91200 0.89716 0.88414 0.89606 0.92472 0.92536 0.95453 0.95392 0.80397 0.93236 0.74676 0.78238 0.79508 0.79646 0.77938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.48 71.98 0.68 -2.16 16 2 C 0.14 3.12 2.58 44.99 0.12 3.24 16 3 H 0.07 1.92 7.57 -2.38 -0.02 1.90 16 4 C -0.11 -2.37 4.75 30.59 0.15 -2.22 16 5 C -0.12 -3.49 5.22 30.60 0.16 -3.33 16 6 C 0.15 5.86 6.26 86.38 0.54 6.40 16 7 N -0.76 -37.37 5.41 -343.45 -1.86 -39.23 16 8 C -0.24 -13.97 10.47 84.03 0.88 -13.09 16 9 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 10 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 11 N -0.98 -64.28 13.97 21.65 0.30 -63.98 16 12 Si 0.95 47.18 27.73 68.60 1.90 49.08 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 16 N -0.69 -16.59 4.52 -445.36 -2.01 -18.61 16 17 C 0.56 15.85 7.77 86.80 0.67 16.52 16 18 O -0.56 -18.11 14.69 -3.88 -0.06 -18.17 16 19 C 0.10 2.56 6.78 42.18 0.29 2.84 16 20 N -0.45 -10.16 9.51 -184.87 -1.76 -11.92 16 21 C 0.07 1.09 11.12 84.57 0.94 2.03 16 22 C -0.09 -1.09 10.18 22.84 0.23 -0.85 16 23 C -0.06 -1.02 6.09 -20.36 -0.12 -1.15 16 24 C -0.13 -1.51 10.39 23.09 0.24 -1.27 16 25 C -0.19 -2.45 11.02 66.91 0.74 -1.71 16 26 S 0.13 2.85 21.43 -56.49 -1.21 1.64 16 27 C -0.18 -4.37 6.33 23.34 0.15 -4.23 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.36 17.21 5.53 -92.71 -0.51 16.70 16 38 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.42 9.18 7.93 -92.71 -0.73 8.44 16 40 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -79.68 374.46 1.17 -78.51 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.27 Total: 25.05 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 6.13 Total: -2.38 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -5.33 Total: -133.73 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.06 Total: -18.17 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.08 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.21 Total: 1.64 kcal Total: -79.68 1.17 -78.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700683894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.888 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds