Wall clock time and date at job start Tue Mar 31 2020 18:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47480 * 120.00049 * 2 1 3 5 5 N 1.46495 * 109.47414 * 175.00025 * 4 2 1 6 6 C 1.46498 * 119.99998 * 269.99546 * 5 4 2 7 7 C 1.34776 * 120.00334 * 90.00065 * 5 4 2 8 8 O 1.21763 * 119.99618 * 0.40231 * 7 5 4 9 9 C 1.46111 * 120.00373 * 180.40426 * 7 5 4 10 10 S 1.75820 * 125.47390 * 349.69093 * 9 7 5 11 11 C 1.70571 * 91.66963 * 180.22397 * 10 9 7 12 12 C 1.33577 * 111.18005 * 359.81055 * 11 10 9 13 13 C 1.37350 * 125.48086 * 169.56584 * 9 7 5 14 14 N 1.39881 * 123.48583 * 359.97438 * 13 9 7 15 15 C 1.36606 * 125.67426 * 309.42249 * 14 13 9 16 16 C 1.34838 * 108.19490 * 179.88740 * 15 14 13 17 17 C 1.40959 * 107.47944 * 0.36958 * 16 15 14 18 18 C 1.34839 * 107.47219 * 359.76689 * 17 16 15 19 19 N 1.46500 * 109.46846 * 239.99788 * 2 1 3 20 20 C 1.36938 * 120.00031 * 85.00458 * 19 2 1 21 21 H 1.07999 * 119.99964 * 359.97438 * 20 19 2 22 22 C 1.38816 * 120.00260 * 180.02562 * 20 19 2 23 23 N 1.31616 * 119.99743 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00023 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46981 * 60.00053 * 24 22 20 26 26 H 1.48504 * 109.47003 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47413 * 300.00083 * 24 22 20 28 28 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46808 * 300.00093 * 1 2 3 30 30 H 1.08993 * 109.47302 * 60.00013 * 1 2 3 31 31 H 1.09003 * 109.47194 * 54.99706 * 4 2 1 32 32 H 1.09003 * 109.46905 * 294.99871 * 4 2 1 33 33 H 1.08997 * 109.47674 * 263.55555 * 6 5 4 34 34 H 1.09009 * 109.46949 * 23.55888 * 6 5 4 35 35 H 1.09003 * 109.47266 * 143.55152 * 6 5 4 36 36 H 1.08011 * 124.41121 * 179.82690 * 11 10 9 37 37 H 1.08002 * 122.46163 * 180.02562 * 12 11 10 38 38 H 1.07995 * 125.90078 * 0.03486 * 15 14 13 39 39 H 1.08009 * 126.25995 * 180.14036 * 16 15 14 40 40 H 1.08004 * 126.27042 * 179.76851 * 17 16 15 41 41 H 1.08001 * 125.90265 * 179.97438 * 18 17 16 42 42 H 0.97003 * 120.00468 * 264.99576 * 19 2 1 43 43 H 0.97002 * 120.00003 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2677 0.1492 1.7155 8 8 3.7476 1.1144 2.2451 9 6 5.7238 0.0486 1.6491 10 16 6.6267 -1.3776 1.1572 11 6 8.1149 -0.5785 1.3945 12 6 7.9276 0.6766 1.8114 13 6 6.6073 1.0537 1.9587 14 7 6.2108 2.3257 2.3846 15 6 5.2909 3.1228 1.7643 16 6 5.1779 4.2648 2.4722 17 6 6.0645 4.1755 3.5643 18 6 6.6833 2.9800 3.4868 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3758 21 1 1.8920 1.0402 -2.4244 22 6 2.6113 -0.6621 -3.5093 23 7 2.9242 -1.9391 -3.4502 24 14 2.7890 0.2696 -5.1186 25 1 3.7445 1.3920 -4.9377 26 1 3.2980 -0.6488 -6.1687 27 1 1.4666 0.8065 -5.5284 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7198 1.2952 32 1 1.7518 -0.1583 2.1369 33 1 4.3866 -2.7222 1.3272 34 1 3.4287 -2.4408 -0.1465 35 1 5.0278 -1.6801 0.0345 36 1 9.0826 -1.0288 1.2289 37 1 8.7485 1.3474 2.0177 38 1 4.7465 2.8792 0.8640 39 1 4.5294 5.0974 2.2422 40 1 6.2199 4.9270 4.3243 41 1 7.4247 2.6046 4.1766 42 1 2.2490 -1.6318 -1.1526 43 1 3.2475 -2.3965 -4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700762251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:06 Heat of formation + Delta-G solvation = 86.686751 kcal Electronic energy + Delta-G solvation = -27002.426268 eV Core-core repulsion = 23369.795903 eV Total energy + Delta-G solvation = -3632.630365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.32303 -39.55175 -37.61945 -36.24657 -34.36527 -32.20024 -31.74872 -29.63484 -28.78039 -28.43505 -27.04899 -25.90851 -24.33449 -23.54654 -21.44438 -20.80049 -20.10919 -19.81156 -18.89665 -17.84418 -17.32116 -17.07263 -15.90638 -15.50586 -15.34350 -14.78893 -14.68150 -14.25238 -13.86444 -13.70071 -13.60299 -13.28246 -13.16235 -12.89906 -12.66663 -12.57361 -12.25212 -12.19714 -12.05885 -12.00900 -11.78545 -11.51572 -11.32956 -10.87641 -10.74409 -10.63597 -10.41487 -10.12173 -9.76650 -9.63921 -9.28661 -8.97119 -8.80237 -8.36725 -7.95888 -7.83884 -7.00176 -5.82780 -3.09395 0.34388 1.31364 1.77758 2.01470 2.74348 3.14573 3.19894 3.34569 3.39762 3.41429 3.45432 3.47242 4.55691 4.59742 4.88310 5.00680 5.24217 5.28116 5.39491 5.45371 5.49775 5.53501 5.58870 5.65432 5.73611 5.80366 5.82086 5.93219 6.01690 6.05564 6.13541 6.22844 6.27826 6.50162 6.54172 6.62426 6.70862 6.83182 7.09699 7.21932 7.44090 7.57778 7.68151 7.68932 8.35795 8.37725 9.48361 10.03143 10.39030 11.40217 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.004409 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.032536 B = 6349.046465 C = 6746.552008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.113 3.887 5 N -0.587 5.587 6 C 0.069 3.931 7 C 0.583 3.417 8 O -0.520 6.520 9 C -0.272 4.272 10 S 0.288 5.712 11 C -0.259 4.259 12 C -0.151 4.151 13 C 0.175 3.825 14 N -0.384 5.384 15 C 0.049 3.951 16 C -0.210 4.210 17 C -0.190 4.190 18 C -0.022 4.022 19 N -0.720 5.720 20 C -0.231 4.231 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.936 5.936 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.380 0.620 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.062 0.124 13.290 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.010 4.010 5 N -0.318 5.318 6 C -0.077 4.077 7 C 0.370 3.630 8 O -0.399 6.399 9 C -0.395 4.395 10 S 0.557 5.443 11 C -0.396 4.396 12 C -0.182 4.182 13 C 0.067 3.933 14 N -0.058 5.058 15 C -0.079 4.079 16 C -0.234 4.234 17 C -0.215 4.215 18 C -0.148 4.148 19 N -0.363 5.363 20 C -0.363 4.363 21 H 0.086 0.914 22 C -0.207 4.207 23 N -0.585 5.585 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.215 0.785 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.531 -1.031 12.856 15.463 hybrid contribution 0.774 1.523 -0.735 1.860 sum 9.304 0.492 12.122 15.289 Atomic orbital electron populations 1.22359 0.98618 1.00869 1.00386 1.20662 0.92087 0.96321 0.86553 0.92963 1.21912 0.77768 1.01496 0.99834 1.47425 1.07069 1.20867 1.56447 1.22069 0.99581 0.87898 0.98117 1.16714 0.84069 0.83051 0.79188 1.90885 1.73361 1.30604 1.45011 1.24678 0.98263 0.99183 1.17360 1.83874 0.91294 1.10875 1.58230 1.25701 1.07141 1.00431 1.06346 1.19640 0.95367 0.97376 1.05851 1.16896 0.91711 0.84565 1.00098 1.40867 1.33202 1.10484 1.21250 1.21802 0.95000 0.90703 1.00393 1.20804 1.04913 0.99217 0.98436 1.20825 1.01769 0.97558 1.01367 1.21729 1.05394 0.94751 0.92939 1.42440 1.78268 1.10324 1.05296 1.19180 1.36017 0.93812 0.87248 0.91443 1.24639 1.02333 0.95960 0.97812 1.69604 1.51434 1.08535 1.28975 0.86324 0.77830 0.78662 0.83748 1.21420 1.21711 1.21324 0.93453 0.94232 0.92495 0.90639 0.89777 0.92531 0.87409 0.90766 0.81205 0.83853 0.82594 0.84745 0.84818 0.82622 0.78505 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.51 16 2 C 0.15 3.04 3.20 -67.93 -0.22 2.82 16 3 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 4 C 0.11 1.87 5.02 -4.05 -0.02 1.85 16 5 N -0.59 -9.86 2.73 -183.33 -0.50 -10.36 16 6 C 0.07 1.02 8.43 59.85 0.50 1.53 16 7 C 0.58 10.51 7.47 -13.10 -0.10 10.41 16 8 O -0.52 -10.59 13.22 5.13 0.07 -10.53 16 9 C -0.27 -4.30 6.19 -36.75 -0.23 -4.53 16 10 S 0.29 3.39 17.91 -107.50 -1.92 1.47 16 11 C -0.26 -2.73 10.90 29.10 0.32 -2.41 16 12 C -0.15 -1.85 9.97 -41.26 -0.41 -2.26 16 13 C 0.17 2.69 5.98 -84.56 -0.51 2.18 16 14 N -0.38 -6.25 2.58 -61.59 -0.16 -6.41 16 15 C 0.05 0.86 8.63 -16.63 -0.14 0.71 16 16 C -0.21 -3.33 10.86 -39.76 -0.43 -3.76 16 17 C -0.19 -2.72 10.86 -39.76 -0.43 -3.15 16 18 C -0.02 -0.31 11.24 -16.63 -0.19 -0.50 16 19 N -0.72 -16.80 4.57 -53.42 -0.24 -17.04 16 20 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.94 -26.34 13.06 55.49 0.72 -25.61 16 24 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.08 1.37 7.41 -51.93 -0.38 0.99 16 33 H 0.06 0.66 7.74 -51.93 -0.40 0.25 16 34 H 0.11 1.80 5.80 -51.92 -0.30 1.49 16 35 H 0.07 1.15 4.66 -23.66 -0.11 1.04 16 36 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.16 2.91 7.78 -52.49 -0.41 2.51 16 39 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 41 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.38 9.00 5.42 -40.82 -0.22 8.78 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -31.67 364.43 -8.91 -40.58 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.60 Total: 11.80 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.74 Total: -6.38 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.18 Total: -59.42 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.92 Total: 1.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.67 -8.91 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700762251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.263 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds