Wall clock time and date at job start Tue Mar 31 2020 18:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47480 * 120.00049 * 2 1 3 5 5 N 1.46495 * 109.47414 * 175.00025 * 4 2 1 6 6 C 1.46498 * 119.99998 * 269.99546 * 5 4 2 7 7 C 1.34776 * 120.00334 * 90.00065 * 5 4 2 8 8 O 1.21763 * 119.99618 * 0.40231 * 7 5 4 9 9 C 1.46111 * 120.00373 * 180.40426 * 7 5 4 10 10 S 1.75820 * 125.47390 * 349.69093 * 9 7 5 11 11 C 1.70571 * 91.66963 * 180.22397 * 10 9 7 12 12 C 1.33577 * 111.18005 * 359.81055 * 11 10 9 13 13 C 1.37350 * 125.48086 * 169.56584 * 9 7 5 14 14 N 1.39881 * 123.48583 * 359.97438 * 13 9 7 15 15 C 1.36606 * 125.67426 * 309.42249 * 14 13 9 16 16 C 1.34838 * 108.19490 * 179.88740 * 15 14 13 17 17 C 1.40959 * 107.47944 * 0.36958 * 16 15 14 18 18 C 1.34839 * 107.47219 * 359.76689 * 17 16 15 19 19 N 1.46500 * 109.46846 * 239.99788 * 2 1 3 20 20 C 1.36938 * 120.00031 * 85.00458 * 19 2 1 21 21 H 1.07999 * 119.99964 * 359.97438 * 20 19 2 22 22 C 1.38816 * 120.00260 * 180.02562 * 20 19 2 23 23 N 1.31616 * 119.99743 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00023 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46981 * 60.00053 * 24 22 20 26 26 H 1.48504 * 109.47003 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47413 * 300.00083 * 24 22 20 28 28 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46808 * 300.00093 * 1 2 3 30 30 H 1.08993 * 109.47302 * 60.00013 * 1 2 3 31 31 H 1.09003 * 109.47194 * 54.99706 * 4 2 1 32 32 H 1.09003 * 109.46905 * 294.99871 * 4 2 1 33 33 H 1.08997 * 109.47674 * 263.55555 * 6 5 4 34 34 H 1.09009 * 109.46949 * 23.55888 * 6 5 4 35 35 H 1.09003 * 109.47266 * 143.55152 * 6 5 4 36 36 H 1.08011 * 124.41121 * 179.82690 * 11 10 9 37 37 H 1.08002 * 122.46163 * 180.02562 * 12 11 10 38 38 H 1.07995 * 125.90078 * 0.03486 * 15 14 13 39 39 H 1.08009 * 126.25995 * 180.14036 * 16 15 14 40 40 H 1.08004 * 126.27042 * 179.76851 * 17 16 15 41 41 H 1.08001 * 125.90265 * 179.97438 * 18 17 16 42 42 H 0.97003 * 120.00468 * 264.99576 * 19 2 1 43 43 H 0.97002 * 120.00003 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2677 0.1492 1.7155 8 8 3.7476 1.1144 2.2451 9 6 5.7238 0.0486 1.6491 10 16 6.6267 -1.3776 1.1572 11 6 8.1149 -0.5785 1.3945 12 6 7.9276 0.6766 1.8114 13 6 6.6073 1.0537 1.9587 14 7 6.2108 2.3257 2.3846 15 6 5.2909 3.1228 1.7643 16 6 5.1779 4.2648 2.4722 17 6 6.0645 4.1755 3.5643 18 6 6.6833 2.9800 3.4868 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3758 21 1 1.8920 1.0402 -2.4244 22 6 2.6113 -0.6621 -3.5093 23 7 2.9242 -1.9391 -3.4502 24 14 2.7890 0.2696 -5.1186 25 1 3.7445 1.3920 -4.9377 26 1 3.2980 -0.6488 -6.1687 27 1 1.4666 0.8065 -5.5284 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7198 1.2952 32 1 1.7518 -0.1583 2.1369 33 1 4.3866 -2.7222 1.3272 34 1 3.4287 -2.4408 -0.1465 35 1 5.0278 -1.6801 0.0345 36 1 9.0826 -1.0288 1.2289 37 1 8.7485 1.3474 2.0177 38 1 4.7465 2.8792 0.8640 39 1 4.5294 5.0974 2.2422 40 1 6.2199 4.9270 4.3243 41 1 7.4247 2.6046 4.1766 42 1 2.2490 -1.6318 -1.1526 43 1 3.2475 -2.3965 -4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700762251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:05 Heat of formation + Delta-G solvation = 69.114155 kcal Electronic energy + Delta-G solvation = -27003.188273 eV Core-core repulsion = 23369.795903 eV Total energy + Delta-G solvation = -3633.392370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47371 -40.87680 -38.70400 -37.76873 -35.92828 -34.04233 -32.85080 -31.08306 -30.32421 -29.62495 -28.35663 -27.19431 -25.84123 -25.11758 -22.61981 -22.06338 -21.28975 -21.26545 -20.03681 -19.30981 -19.06167 -18.25101 -17.14502 -16.81070 -16.71053 -16.44691 -15.80082 -15.56380 -15.44216 -15.22405 -14.90884 -14.55323 -14.31135 -14.09285 -14.01479 -13.84330 -13.75488 -13.49457 -13.32972 -13.18789 -13.07147 -12.96764 -12.82041 -12.80426 -12.51745 -12.24027 -11.96040 -11.71783 -11.50986 -11.11536 -10.94626 -10.36534 -9.82871 -9.70756 -9.06190 -9.04009 -8.94911 -7.93377 -5.18214 -0.72289 0.29681 0.82592 1.01869 1.45294 1.45550 1.51581 1.57086 1.88152 2.07651 2.13328 2.17560 2.55300 3.40014 3.45972 3.84110 3.93995 3.98114 4.04988 4.10555 4.28284 4.30419 4.34927 4.44208 4.53297 4.63777 4.67399 4.68264 4.78015 4.79957 4.85728 4.95901 5.02504 5.09296 5.23966 5.31443 5.33249 5.39071 5.51820 5.61078 6.05564 6.23010 6.28433 6.32454 6.55113 7.04189 7.37996 8.09032 8.38949 9.28832 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.004409 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.032536 B = 6349.046465 C = 6746.552008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 H 0.019 0.981 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.069 3.931 7 C 0.574 3.426 8 O -0.557 6.557 9 C -0.320 4.320 10 S 0.329 5.671 11 C -0.234 4.234 12 C -0.164 4.164 13 C 0.161 3.839 14 N -0.391 5.391 15 C 0.016 3.984 16 C -0.216 4.216 17 C -0.198 4.198 18 C -0.019 4.019 19 N -0.723 5.723 20 C -0.236 4.236 21 H 0.056 0.944 22 C -0.058 4.058 23 N -0.955 5.955 24 Si 0.955 3.045 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.284 1.284 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.211 0.789 37 H 0.164 0.836 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.162 0.838 41 H 0.189 0.811 42 H 0.379 0.621 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.916 -0.846 14.407 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.037 0.963 4 C -0.003 4.003 5 N -0.321 5.321 6 C -0.075 4.075 7 C 0.363 3.637 8 O -0.438 6.438 9 C -0.442 4.442 10 S 0.599 5.401 11 C -0.372 4.372 12 C -0.194 4.194 13 C 0.052 3.948 14 N -0.064 5.064 15 C -0.113 4.113 16 C -0.240 4.240 17 C -0.223 4.223 18 C -0.145 4.145 19 N -0.366 5.366 20 C -0.368 4.368 21 H 0.074 0.926 22 C -0.251 4.251 23 N -0.606 5.606 24 Si 0.785 3.215 25 H -0.217 1.217 26 H -0.215 1.215 27 H -0.211 1.211 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.228 0.772 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.180 0.820 41 H 0.206 0.794 42 H 0.214 0.786 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.369 -2.017 13.981 17.523 hybrid contribution 0.240 1.831 -1.044 2.121 sum 10.609 -0.187 12.937 16.731 Atomic orbital electron populations 1.22200 0.96684 1.01633 1.00656 1.20748 0.93366 0.94639 0.86807 0.96329 1.21822 0.78177 1.02394 0.97957 1.47528 1.07055 1.21277 1.56260 1.22151 0.98803 0.87790 0.98794 1.17120 0.85319 0.82565 0.78663 1.90844 1.74411 1.31819 1.46700 1.24693 0.97498 1.01801 1.20213 1.83572 0.91053 1.08648 1.56833 1.26155 1.08171 0.99505 1.03378 1.19794 0.94389 0.98485 1.06700 1.17402 0.93086 0.84134 1.00141 1.41024 1.32918 1.10884 1.21621 1.21567 0.96801 0.92177 1.00720 1.21088 1.05157 0.98917 0.98813 1.21178 1.01222 0.98458 1.01401 1.22348 1.05280 0.94510 0.92367 1.42465 1.78503 1.10212 1.05403 1.19341 1.35255 0.93546 0.88659 0.92594 1.25198 1.02970 0.96809 1.00147 1.69705 1.52335 1.09266 1.29262 0.85501 0.77572 0.77520 0.80860 1.21652 1.21536 1.21088 0.92348 0.91589 0.94580 0.88114 0.89492 0.88788 0.89195 0.91344 0.77247 0.81866 0.85504 0.83936 0.82024 0.79429 0.78617 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.49 71.98 0.68 -4.67 16 2 C 0.15 6.22 3.20 44.99 0.14 6.36 16 3 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16 4 C 0.12 3.97 5.02 86.38 0.43 4.40 16 5 N -0.59 -20.01 2.73 -852.13 -2.33 -22.34 16 6 C 0.07 2.01 8.43 127.77 1.08 3.09 16 7 C 0.57 21.33 7.47 86.29 0.64 21.97 16 8 O -0.56 -23.84 13.22 -4.55 -0.06 -23.90 16 9 C -0.32 -10.09 6.19 24.10 0.15 -9.94 16 10 S 0.33 7.06 17.91 -56.49 -1.01 6.05 16 11 C -0.23 -4.12 10.90 66.76 0.73 -3.39 16 12 C -0.16 -3.62 9.97 21.18 0.21 -3.41 16 13 C 0.16 4.87 5.98 37.62 0.22 5.10 16 14 N -0.39 -12.82 2.58 -348.78 -0.90 -13.72 16 15 C 0.02 0.58 8.63 83.17 0.72 1.30 16 16 C -0.22 -7.03 10.86 22.16 0.24 -6.79 16 17 C -0.20 -5.48 10.86 22.16 0.24 -5.24 16 18 C -0.02 -0.51 11.24 83.17 0.94 0.42 16 19 N -0.72 -34.40 4.57 -322.94 -1.47 -35.88 16 20 C -0.24 -12.89 9.93 84.03 0.83 -12.06 16 21 H 0.06 3.13 7.83 -2.91 -0.02 3.10 16 22 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 23 N -0.96 -53.98 13.06 21.65 0.28 -53.69 16 24 Si 0.96 45.71 29.55 68.60 2.03 47.74 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 2.83 8.07 -2.39 -0.02 2.81 16 32 H 0.09 2.85 7.41 -2.39 -0.02 2.84 16 33 H 0.09 1.99 7.74 -2.39 -0.02 1.97 16 34 H 0.09 2.97 5.80 -2.38 -0.01 2.96 16 35 H 0.07 2.08 4.66 -20.36 -0.09 1.98 16 36 H 0.21 1.99 8.06 -2.90 -0.02 1.97 16 37 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.13 5.28 7.78 -2.91 -0.02 5.26 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.38 18.17 5.42 -92.71 -0.50 17.66 16 43 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -70.92 364.43 4.71 -66.21 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.44 Total: 35.12 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 7.73 Total: -5.59 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -4.42 Total: -125.63 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.01 Total: 6.05 kcal Total: -70.92 4.71 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700762251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.325 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds