Wall clock time and date at job start Tue Mar 31 2020 17:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46823 * 129.84032 * 3 2 1 5 5 C 1.53000 * 109.46905 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47075 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47089 * 60.00272 * 20 18 16 22 22 H 1.48505 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47514 * 300.00169 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 4.44651 * 5.63331 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47202 * 9.84442 * 3 2 1 29 29 H 1.08994 * 109.47467 * 249.84182 * 3 2 1 30 30 H 1.08997 * 109.46897 * 60.00224 * 4 3 2 31 31 H 1.08994 * 109.47222 * 300.00300 * 4 3 2 32 32 H 1.09004 * 109.47147 * 59.99976 * 5 4 3 33 33 H 1.09003 * 109.47011 * 300.00626 * 5 4 3 34 34 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 35 35 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 36 36 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 37 37 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 38 38 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 39 39 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 40 40 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 41 41 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 43 43 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9251 -1.1077 5 6 4.6856 0.9253 -1.1081 6 6 5.1874 1.8362 -2.1986 7 8 4.3990 2.4268 -2.9062 8 7 6.5125 1.9947 -2.3877 9 6 7.0215 2.8788 -3.4469 10 6 7.7730 4.0437 -2.7926 11 6 8.6691 3.5006 -1.7055 12 16 10.0299 4.3396 -0.9704 13 6 10.3231 2.9952 0.0432 14 6 11.4245 2.9116 1.0685 15 7 12.6274 2.3510 0.4482 16 6 13.7645 2.1792 1.1917 17 1 13.7745 2.4574 2.2352 18 6 14.9042 1.6474 0.6042 19 7 14.8921 1.3089 -0.6676 20 14 16.4554 1.4138 1.6183 21 1 16.1732 0.4947 2.7501 22 1 17.5225 0.8331 0.7641 23 1 16.9038 2.7270 2.1471 24 7 9.4668 2.0649 -0.1957 25 6 8.5564 2.2881 -1.1313 26 6 7.4838 1.2870 -1.5406 27 1 -1.0501 0.0000 0.0004 28 1 3.0098 -1.0117 -0.1757 29 1 3.0093 0.3549 0.9646 30 1 2.7918 1.9374 -0.9320 31 1 2.7924 0.5708 -2.0723 32 1 5.0490 -0.0872 -1.2840 33 1 5.0491 1.2793 -0.1434 34 1 6.1877 3.2647 -4.0334 35 1 7.7003 2.3224 -4.0932 36 1 7.0572 4.7427 -2.3601 37 1 8.3773 4.5550 -3.5420 38 1 11.6431 3.9094 1.4490 39 1 11.1073 2.2706 1.8909 40 1 12.6185 2.1015 -0.4891 41 1 15.6887 0.9376 -1.0783 42 1 7.9361 0.4690 -2.1012 43 1 6.9848 0.8966 -0.6536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707276659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:26 Heat of formation + Delta-G solvation = 68.589613 kcal Electronic energy + Delta-G solvation = -24775.767523 eV Core-core repulsion = 21142.352407 eV Total energy + Delta-G solvation = -3633.415116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.71886 -39.38515 -36.72773 -35.84294 -34.69892 -33.11637 -32.22839 -31.58996 -29.83764 -28.42498 -26.84687 -25.96090 -23.86906 -23.43523 -22.26681 -21.67631 -19.72884 -18.64569 -18.19303 -17.99450 -17.25825 -16.80620 -16.38061 -16.29988 -15.40577 -15.00164 -14.75799 -14.63200 -14.26147 -14.05997 -13.72261 -13.62149 -13.49902 -13.13794 -13.02226 -12.71838 -12.63838 -12.57803 -12.25904 -11.91784 -11.80828 -11.46708 -11.33928 -11.10262 -10.98858 -10.84638 -10.54286 -10.39945 -10.21419 -10.08169 -9.85754 -9.36529 -9.12240 -8.96505 -8.93950 -8.47244 -7.06284 -5.83702 -3.15415 0.85198 1.50350 1.96250 2.34127 2.45469 2.54751 2.66223 2.87641 3.40898 3.45173 3.46320 3.96230 4.06439 4.21994 4.54222 4.59971 4.62934 4.67439 4.74234 4.93899 5.00395 5.02341 5.11781 5.19271 5.21947 5.25187 5.29018 5.37304 5.48915 5.52369 5.66194 5.71940 5.76228 5.76840 5.92153 5.95667 6.10193 6.14524 6.38166 6.43159 7.06001 7.32369 7.61165 7.85202 7.96885 8.31849 9.44272 9.95007 10.31391 11.38449 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002222 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.752516 B =12595.789717 C =13555.753854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.522 3.478 7 O -0.540 6.540 8 N -0.613 5.613 9 C 0.115 3.885 10 C -0.053 4.053 11 C -0.237 4.237 12 S 0.136 5.864 13 C 0.076 3.924 14 C 0.224 3.776 15 N -0.723 5.723 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.912 3.088 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 N -0.464 5.464 25 C 0.045 3.955 26 C 0.193 3.807 27 H 0.216 0.784 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.093 0.907 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.140 1.488 -2.890 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.311 3.689 7 O -0.417 6.417 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.093 4.093 11 C -0.359 4.359 12 S 0.395 5.605 13 C -0.203 4.203 14 C 0.094 3.906 15 N -0.369 5.369 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 N -0.178 5.178 25 C -0.089 4.089 26 C 0.067 3.933 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.872 2.323 -2.929 23.176 hybrid contribution 0.377 -0.873 0.066 0.953 sum -22.496 1.450 -2.863 22.723 Atomic orbital electron populations 1.24916 0.96015 1.01106 1.00998 1.23102 0.94572 1.00346 1.00381 1.18782 0.84878 1.01256 1.00270 1.21279 0.92763 1.00610 0.98957 1.21765 0.97471 1.00552 0.98622 1.20640 0.81174 0.82094 0.84968 1.90699 1.54455 1.48641 1.47908 1.48118 1.05619 1.46652 1.34294 1.21652 0.99063 0.90747 0.89436 1.20461 0.96262 0.97850 0.94738 1.25848 1.03450 0.99515 1.07097 1.83979 1.23474 1.20977 1.32089 1.27309 0.99667 0.91701 1.01653 1.19340 0.82685 0.98261 0.90345 1.42253 1.06983 1.76178 1.11468 1.19153 0.88784 1.35909 0.93852 0.90786 1.24776 0.98279 1.01330 0.96151 1.69666 1.29089 1.48386 1.10589 0.86202 0.82687 0.77886 0.78966 1.21099 1.21628 1.21098 1.65773 1.04215 1.30792 1.17016 1.20836 0.98107 0.94440 0.95476 1.20270 0.86814 0.91314 0.94895 0.76721 0.89298 0.89310 0.90743 0.90695 0.88204 0.88262 0.87915 0.90359 0.89964 0.89204 0.93976 0.92858 0.77945 0.93288 0.88905 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.18 -1.62 13.34 -37.12 -0.50 -2.11 16 3 C -0.02 -0.10 5.70 -29.51 -0.17 -0.27 16 4 C -0.10 -0.76 4.46 -26.73 -0.12 -0.88 16 5 C -0.14 -1.04 4.10 -27.89 -0.11 -1.15 16 6 C 0.52 5.51 7.70 -10.99 -0.08 5.42 16 7 O -0.54 -7.40 15.41 5.55 0.09 -7.31 16 8 N -0.61 -6.31 2.92 -173.04 -0.50 -6.81 16 9 C 0.11 1.13 6.41 -3.58 -0.02 1.11 16 10 C -0.05 -0.54 6.44 -27.59 -0.18 -0.72 16 11 C -0.24 -3.20 6.43 -35.44 -0.23 -3.43 16 12 S 0.14 2.04 23.17 -107.50 -2.49 -0.45 16 13 C 0.08 1.36 6.75 -13.60 -0.09 1.27 16 14 C 0.22 4.51 6.84 -5.19 -0.04 4.47 16 15 N -0.72 -18.18 5.59 -61.09 -0.34 -18.52 16 16 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 N -0.46 -8.07 10.51 -7.27 -0.08 -8.15 16 25 C 0.05 0.65 6.87 -82.80 -0.57 0.08 16 26 C 0.19 2.03 6.65 -4.10 -0.03 2.00 16 27 H 0.22 1.01 7.80 -54.08 -0.42 0.59 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.10 0.61 7.57 -51.93 -0.39 0.22 16 34 H 0.10 1.01 7.01 -51.93 -0.36 0.64 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.39 10.46 7.66 -40.82 -0.31 10.14 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.90 6.15 -51.93 -0.32 0.58 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -33.71 379.72 -9.72 -43.43 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.00 Total: 4.83 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.81 Total: -2.59 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.20 Total: -60.54 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.71 -9.72 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707276659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.016 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds