Wall clock time and date at job start Tue Mar 31 2020 17:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46823 * 129.84032 * 3 2 1 5 5 C 1.53000 * 109.46905 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47075 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47089 * 60.00272 * 20 18 16 22 22 H 1.48505 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47514 * 300.00169 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 4.44651 * 5.63331 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47202 * 9.84442 * 3 2 1 29 29 H 1.08994 * 109.47467 * 249.84182 * 3 2 1 30 30 H 1.08997 * 109.46897 * 60.00224 * 4 3 2 31 31 H 1.08994 * 109.47222 * 300.00300 * 4 3 2 32 32 H 1.09004 * 109.47147 * 59.99976 * 5 4 3 33 33 H 1.09003 * 109.47011 * 300.00626 * 5 4 3 34 34 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 35 35 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 36 36 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 37 37 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 38 38 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 39 39 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 40 40 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 41 41 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 43 43 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9251 -1.1077 5 6 4.6856 0.9253 -1.1081 6 6 5.1874 1.8362 -2.1986 7 8 4.3990 2.4268 -2.9062 8 7 6.5125 1.9947 -2.3877 9 6 7.0215 2.8788 -3.4469 10 6 7.7730 4.0437 -2.7926 11 6 8.6691 3.5006 -1.7055 12 16 10.0299 4.3396 -0.9704 13 6 10.3231 2.9952 0.0432 14 6 11.4245 2.9116 1.0685 15 7 12.6274 2.3510 0.4482 16 6 13.7645 2.1792 1.1917 17 1 13.7745 2.4574 2.2352 18 6 14.9042 1.6474 0.6042 19 7 14.8921 1.3089 -0.6676 20 14 16.4554 1.4138 1.6183 21 1 16.1732 0.4947 2.7501 22 1 17.5225 0.8331 0.7641 23 1 16.9038 2.7270 2.1471 24 7 9.4668 2.0649 -0.1957 25 6 8.5564 2.2881 -1.1313 26 6 7.4838 1.2870 -1.5406 27 1 -1.0501 0.0000 0.0004 28 1 3.0098 -1.0117 -0.1757 29 1 3.0093 0.3549 0.9646 30 1 2.7918 1.9374 -0.9320 31 1 2.7924 0.5708 -2.0723 32 1 5.0490 -0.0872 -1.2840 33 1 5.0491 1.2793 -0.1434 34 1 6.1877 3.2647 -4.0334 35 1 7.7003 2.3224 -4.0932 36 1 7.0572 4.7427 -2.3601 37 1 8.3773 4.5550 -3.5420 38 1 11.6431 3.9094 1.4490 39 1 11.1073 2.2706 1.8909 40 1 12.6185 2.1015 -0.4891 41 1 15.6887 0.9376 -1.0783 42 1 7.9361 0.4690 -2.1012 43 1 6.9848 0.8966 -0.6536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707276659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:25 Heat of formation + Delta-G solvation = 47.718561 kcal Electronic energy + Delta-G solvation = -24776.672559 eV Core-core repulsion = 21142.352407 eV Total energy + Delta-G solvation = -3634.320152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.65573 -40.43570 -37.71660 -36.57269 -36.36887 -33.97218 -33.47551 -32.82769 -31.14372 -29.06225 -28.40975 -26.85655 -25.37954 -24.54242 -23.44152 -22.68594 -20.66815 -19.56995 -19.40989 -18.93694 -18.77977 -17.69569 -17.24723 -17.04576 -16.79411 -16.29917 -15.89134 -15.61014 -15.32974 -15.20910 -14.93683 -14.86777 -14.55428 -14.13816 -14.00643 -13.80402 -13.72535 -13.42449 -13.36793 -13.03858 -12.96382 -12.72569 -12.58444 -12.28137 -12.17510 -12.11661 -11.94318 -11.87322 -11.17218 -11.01327 -10.95877 -10.91089 -10.59657 -10.21958 -9.87371 -9.61827 -9.09013 -7.96172 -5.28297 -0.35468 0.32969 0.76289 1.49915 1.53447 1.54034 1.59079 1.67296 1.76364 1.94188 1.95522 2.56849 2.95640 3.38334 3.41715 3.54786 3.69998 3.82752 3.88631 4.05959 4.08139 4.11709 4.19969 4.28082 4.33133 4.43961 4.52734 4.58645 4.65372 4.71288 4.75296 4.78556 4.80341 4.86489 4.88551 5.16132 5.19967 5.21515 5.27883 5.35827 5.48266 6.21835 6.25371 6.73625 6.74321 7.06350 7.29845 7.95957 8.23017 9.26828 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002222 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.752516 B =12595.789717 C =13555.753854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.013 4.013 4 C -0.090 4.090 5 C -0.139 4.139 6 C 0.520 3.480 7 O -0.576 6.576 8 N -0.612 5.612 9 C 0.113 3.887 10 C -0.050 4.050 11 C -0.226 4.226 12 S 0.157 5.843 13 C 0.038 3.962 14 C 0.227 3.773 15 N -0.736 5.736 16 C -0.250 4.250 17 H 0.085 0.915 18 C -0.071 4.071 19 N -0.969 5.969 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.274 1.274 24 N -0.478 5.478 25 C 0.028 3.972 26 C 0.197 3.803 27 H 0.239 0.761 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.103 0.897 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.967 1.350 -2.365 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.050 4.050 4 C -0.129 4.129 5 C -0.179 4.179 6 C 0.310 3.690 7 O -0.456 6.456 8 N -0.345 5.345 9 C -0.011 4.011 10 C -0.090 4.090 11 C -0.348 4.348 12 S 0.415 5.585 13 C -0.240 4.240 14 C 0.098 3.902 15 N -0.380 5.380 16 C -0.381 4.381 17 H 0.103 0.897 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.200 1.200 24 N -0.193 5.193 25 C -0.105 4.105 26 C 0.072 3.928 27 H 0.256 0.744 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.716 2.200 -2.356 23.934 hybrid contribution 0.476 -0.755 -0.146 0.904 sum -23.240 1.445 -2.502 23.419 Atomic orbital electron populations 1.25706 0.97090 1.00569 1.00402 1.23803 0.95787 1.00964 1.01027 1.18856 0.83869 1.01909 1.00316 1.21154 0.93302 0.99717 0.98685 1.21821 0.96776 1.01229 0.98033 1.21206 0.80804 0.81874 0.85072 1.90687 1.55223 1.50228 1.49447 1.48174 1.05637 1.46543 1.34123 1.21707 0.99171 0.90696 0.89499 1.20595 0.96026 0.98211 0.94203 1.26319 1.02609 0.99059 1.06820 1.83805 1.23937 1.19605 1.31193 1.26847 1.00327 0.93680 1.03145 1.19296 0.81890 0.98181 0.90864 1.42411 1.08256 1.76408 1.10876 1.19613 0.89590 1.34464 0.94427 0.89743 1.25629 1.01532 1.01975 0.97260 1.69832 1.29586 1.50100 1.12341 0.85134 0.78621 0.78092 0.77389 1.20272 1.22308 1.20007 1.65739 1.04562 1.31154 1.17847 1.21360 0.98483 0.95673 0.95020 1.20410 0.86063 0.90419 0.95934 0.74425 0.87577 0.88030 0.92688 0.92185 0.85545 0.86612 0.87844 0.89454 0.89351 0.87394 0.92686 0.93183 0.79515 0.93905 0.87880 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.34 19.25 74.32 1.43 -1.91 16 2 C -0.22 -3.60 13.34 31.13 0.42 -3.19 16 3 C -0.01 -0.15 5.70 28.79 0.16 0.01 16 4 C -0.09 -1.31 4.46 30.60 0.14 -1.17 16 5 C -0.14 -1.66 4.10 29.85 0.12 -1.54 16 6 C 0.52 10.05 7.70 87.65 0.68 10.73 16 7 O -0.58 -15.36 15.41 -3.05 -0.05 -15.41 16 8 N -0.61 -11.25 2.92 -819.76 -2.39 -13.65 16 9 C 0.11 2.00 6.41 86.37 0.55 2.55 16 10 C -0.05 -0.92 6.44 30.04 0.19 -0.73 16 11 C -0.23 -5.70 6.43 24.95 0.16 -5.54 16 12 S 0.16 4.53 23.17 -56.49 -1.31 3.22 16 13 C 0.04 1.35 6.75 88.57 0.60 1.95 16 14 C 0.23 9.15 6.84 85.64 0.59 9.73 16 15 N -0.74 -37.37 5.59 -347.19 -1.94 -39.31 16 16 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 20 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 N -0.48 -16.26 10.51 -176.92 -1.86 -18.12 16 25 C 0.03 0.75 6.87 42.16 0.29 1.04 16 26 C 0.20 3.66 6.65 86.05 0.57 4.23 16 27 H 0.24 1.92 7.80 -4.41 -0.03 1.89 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 31 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.13 0.88 8.09 -2.38 -0.02 0.86 16 33 H 0.12 1.06 7.57 -2.39 -0.02 1.04 16 34 H 0.10 1.87 7.01 -2.39 -0.02 1.85 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.37 20.62 7.66 -92.71 -0.71 19.91 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.13 1.78 6.15 -2.38 -0.01 1.76 16 Total: -1.00 -73.42 379.72 2.28 -71.14 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.32 Total: 23.71 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 7.20 Total: -0.23 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -5.91 Total: -129.62 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.05 Total: -15.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.31 Total: 3.22 kcal Total: -73.42 2.28 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707276659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.857 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds