Wall clock time and date at job start Tue Mar 31 2020 16:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28056 * 124.24058 * 2 1 4 4 C 1.34418 * 117.91672 * 180.02562 * 3 2 1 5 5 C 1.41241 * 129.48201 * 180.29609 * 4 3 2 6 6 C 1.35750 * 120.63364 * 180.21915 * 5 4 3 7 7 C 1.40196 * 120.61681 * 359.45042 * 6 5 4 8 8 C 1.47590 * 120.12434 * 180.29502 * 7 6 5 9 9 O 1.21590 * 119.99628 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00299 * 0.02562 * 8 7 6 11 11 C 1.46494 * 119.99869 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47116 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47315 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47289 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99968 * 90.00248 * 14 13 12 16 16 C 1.36937 * 119.99954 * 270.00185 * 14 13 12 17 17 H 1.08002 * 119.99962 * 23.04677 * 16 14 13 18 18 C 1.38812 * 120.00131 * 203.04280 * 16 14 13 19 19 N 1.31625 * 119.99721 * 12.93097 * 18 16 14 20 20 Si 1.86799 * 120.00119 * 192.93111 * 18 16 14 21 21 H 1.48497 * 109.47116 * 60.00240 * 20 18 16 22 22 H 1.48505 * 109.46814 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46980 * 299.99936 * 20 18 16 24 24 C 1.39179 * 119.74475 * 0.27674 * 7 6 5 25 25 C 1.38917 * 119.84978 * 359.97438 * 24 7 6 26 26 S 1.70644 * 124.24177 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47201 * 269.96318 * 1 2 3 28 28 H 1.08996 * 109.47519 * 29.96563 * 1 2 3 29 29 H 1.09000 * 109.47383 * 149.96485 * 1 2 3 30 30 H 1.08010 * 119.68523 * 359.96777 * 5 4 3 31 31 H 1.08004 * 119.69162 * 179.72893 * 6 5 4 32 32 H 0.97000 * 120.00078 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47055 * 299.99572 * 11 10 8 34 34 H 1.08997 * 109.47515 * 59.99801 * 11 10 8 35 35 H 1.08995 * 109.46837 * 299.99890 * 12 11 10 36 36 H 1.08997 * 109.47179 * 59.99487 * 12 11 10 37 37 H 1.08998 * 109.47155 * 300.00390 * 13 12 11 38 38 H 1.09004 * 109.46997 * 60.00114 * 13 12 11 39 39 H 1.08992 * 109.47047 * 95.12500 * 15 14 13 40 40 H 1.08998 * 109.47150 * 215.12573 * 15 14 13 41 41 H 1.09004 * 109.46756 * 335.12088 * 15 14 13 42 42 H 0.97000 * 119.99670 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.07361 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8951 0.0050 6 6 5.8863 1.5399 -0.0011 7 6 6.2597 0.1885 -0.0015 8 6 7.6874 -0.1854 -0.0016 9 8 8.0087 -1.3581 -0.0024 10 7 8.6351 0.7728 -0.0008 11 6 10.0522 0.4015 -0.0004 12 6 10.9112 1.6677 0.0011 13 6 12.3912 1.2800 0.0022 14 7 13.2137 2.4923 0.0030 15 6 13.6240 3.0983 1.2721 16 6 13.5990 3.0591 -1.1826 17 1 13.0298 2.8714 -2.0810 18 6 14.7211 3.8749 -1.2296 19 7 15.5564 3.9044 -0.2128 20 14 15.0457 4.9309 -2.7359 21 1 13.9118 5.8685 -2.9367 22 1 16.2984 5.7034 -2.5382 23 1 15.1852 4.0597 -3.9304 24 6 5.2789 -0.7989 -0.0013 25 6 3.9368 -0.4403 -0.0003 26 16 2.4671 -1.4107 -0.0006 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8896 -0.5144 30 1 4.3056 2.9408 0.0100 31 1 6.6482 2.3054 -0.0012 32 1 8.3789 1.7084 -0.0006 33 1 10.2731 -0.1879 0.8895 34 1 10.2739 -0.1873 -0.8904 35 1 10.6905 2.2575 -0.8885 36 1 10.6895 2.2562 0.8913 37 1 12.6117 0.6903 0.8920 38 1 12.6133 0.6913 -0.8880 39 1 14.6174 2.7398 1.5415 40 1 13.6454 4.1830 1.1667 41 1 12.9143 2.8231 2.0523 42 1 16.3403 4.4748 -0.2455 43 1 5.5605 -1.8415 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707415898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:05 Heat of formation + Delta-G solvation = 37.924024 kcal Electronic energy + Delta-G solvation = -24321.824716 eV Core-core repulsion = 20687.079841 eV Total energy + Delta-G solvation = -3634.744875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.00302 -39.68584 -37.20065 -36.27802 -34.86859 -32.49482 -31.84201 -31.57544 -30.13382 -28.75576 -25.98881 -25.46604 -24.67797 -23.38409 -21.91415 -21.77918 -20.74874 -20.12535 -19.04527 -17.76977 -16.76631 -16.46605 -16.25541 -15.72159 -15.46721 -15.42876 -14.90406 -14.38489 -14.31153 -14.25347 -13.82998 -13.58140 -13.54365 -13.36580 -12.98637 -12.83960 -12.74662 -12.65752 -11.90993 -11.67326 -11.46386 -11.31569 -11.03696 -10.80889 -10.78918 -10.63966 -10.50919 -10.23976 -10.13149 -10.08108 -9.85601 -9.82309 -9.19348 -8.97645 -8.57441 -8.54492 -6.74347 -5.72009 -3.19293 -0.29111 0.70593 0.72677 1.21953 1.57023 2.71639 3.05980 3.34801 3.38500 3.43869 3.44393 3.44615 4.11763 4.40433 4.43923 4.50126 4.64781 4.69865 4.82658 4.87863 5.01222 5.21456 5.31722 5.36211 5.42048 5.43118 5.60834 5.69135 5.78623 5.79235 5.88047 6.07618 6.10352 6.14574 6.39544 6.49057 6.73942 6.74650 6.92324 7.11900 7.37038 7.41639 7.73280 7.80377 8.08190 8.40470 9.24184 9.87748 10.36784 11.32739 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.001788 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.772078 B =15658.248613 C =16207.089801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 N -0.472 5.472 4 C 0.105 3.895 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.117 4.117 8 C 0.556 3.444 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.120 3.880 12 C -0.151 4.151 13 C 0.155 3.845 14 N -0.603 5.603 15 C 0.162 3.838 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.908 5.908 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.005 4.005 25 C -0.197 4.197 26 S 0.114 5.886 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.039 0.961 41 H -0.003 1.003 42 H 0.253 0.747 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.302 -8.059 2.315 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 N -0.187 5.187 4 C -0.016 4.016 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.124 4.124 8 C 0.343 3.657 9 O -0.416 6.416 10 N -0.369 5.369 11 C -0.004 4.004 12 C -0.192 4.192 13 C 0.027 3.973 14 N -0.325 5.325 15 C 0.018 3.982 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.028 4.028 25 C -0.316 4.316 26 S 0.370 5.630 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.063 0.937 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -30.416 -9.344 2.350 31.905 hybrid contribution 0.746 1.888 -0.784 2.176 sum -29.669 -7.456 1.566 30.632 Atomic orbital electron populations 1.20605 0.84577 1.04783 1.04499 1.26883 1.02011 0.90963 0.99079 1.66165 1.04098 1.31314 1.17103 1.19331 0.89179 0.91702 1.01413 1.20289 0.90119 0.98817 0.99843 1.20873 0.96204 0.95250 0.97364 1.19931 0.93472 0.93640 1.05312 1.18013 0.84976 0.85758 0.76983 1.90795 1.82813 1.18021 1.49972 1.46059 1.07117 1.09468 1.74225 1.21529 0.77914 0.98663 1.02262 1.22552 0.98656 0.95647 1.02373 1.20592 0.87969 0.89318 0.99431 1.43881 1.58974 1.26343 1.03314 1.20787 0.95762 0.97313 0.84364 1.19136 1.06403 1.25168 0.87906 0.91487 1.25036 0.95602 1.01486 0.97569 1.70064 1.13076 1.41049 1.31087 0.86338 0.77183 0.80445 0.82575 1.21124 1.21636 1.20921 1.20424 0.88110 1.00561 0.93672 1.23747 0.98842 0.96805 1.12158 1.84029 0.95222 1.10103 1.73639 0.88914 0.88773 0.89530 0.83989 0.84081 0.76432 0.91468 0.91307 0.91465 0.92147 0.94367 0.93234 0.95082 0.94186 0.98418 0.93706 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.44 36.00 0.38 0.05 16 2 C 0.09 0.75 7.29 -13.85 -0.10 0.65 16 3 N -0.47 -4.95 10.56 -8.96 -0.09 -5.05 16 4 C 0.11 1.14 7.00 -84.88 -0.59 0.54 16 5 C -0.07 -0.64 10.03 -39.33 -0.39 -1.04 16 6 C -0.08 -0.67 9.44 -39.74 -0.38 -1.04 16 7 C -0.12 -1.29 5.87 -105.00 -0.62 -1.91 16 8 C 0.56 7.39 7.76 -12.45 -0.10 7.30 16 9 O -0.54 -8.97 16.34 5.29 0.09 -8.89 16 10 N -0.72 -8.65 5.51 -61.33 -0.34 -8.99 16 11 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 12 C -0.15 -2.40 5.65 -26.73 -0.15 -2.55 16 13 C 0.16 3.07 5.64 -4.04 -0.02 3.04 16 14 N -0.60 -14.94 2.92 -181.12 -0.53 -15.47 16 15 C 0.16 3.97 8.98 59.85 0.54 4.50 16 16 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 17 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 18 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 19 N -0.91 -26.50 10.71 55.49 0.59 -25.91 16 20 Si 0.90 21.74 29.57 -169.99 -5.03 16.71 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.00 -0.05 9.62 -38.98 -0.37 -0.43 16 25 C -0.20 -2.06 6.54 -38.61 -0.25 -2.31 16 26 S 0.11 0.90 23.11 -107.50 -2.48 -1.59 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.14 0.90 6.38 -52.48 -0.33 0.56 16 32 H 0.40 3.82 6.49 -40.82 -0.26 3.56 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 40 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 41 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.15 1.56 7.64 -52.49 -0.40 1.16 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -33.71 375.29 -10.41 -44.12 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.95 Total: -1.88 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.32 Total: 1.27 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.37 Total: -55.41 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.48 Total: -1.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.71 -10.41 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707415898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.044 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds