Wall clock time and date at job start Tue Mar 31 2020 16:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28056 * 124.24058 * 2 1 4 4 C 1.34418 * 117.91672 * 180.02562 * 3 2 1 5 5 C 1.41241 * 129.48201 * 180.29609 * 4 3 2 6 6 C 1.35750 * 120.63364 * 180.21915 * 5 4 3 7 7 C 1.40196 * 120.61681 * 359.45042 * 6 5 4 8 8 C 1.47590 * 120.12434 * 180.29502 * 7 6 5 9 9 O 1.21590 * 119.99628 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00299 * 0.02562 * 8 7 6 11 11 C 1.46494 * 119.99869 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47116 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47315 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47289 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99968 * 90.00248 * 14 13 12 16 16 C 1.36937 * 119.99954 * 270.00185 * 14 13 12 17 17 H 1.08002 * 119.99962 * 23.04677 * 16 14 13 18 18 C 1.38812 * 120.00131 * 203.04280 * 16 14 13 19 19 N 1.31625 * 119.99721 * 12.93097 * 18 16 14 20 20 Si 1.86799 * 120.00119 * 192.93111 * 18 16 14 21 21 H 1.48497 * 109.47116 * 60.00240 * 20 18 16 22 22 H 1.48505 * 109.46814 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46980 * 299.99936 * 20 18 16 24 24 C 1.39179 * 119.74475 * 0.27674 * 7 6 5 25 25 C 1.38917 * 119.84978 * 359.97438 * 24 7 6 26 26 S 1.70644 * 124.24177 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47201 * 269.96318 * 1 2 3 28 28 H 1.08996 * 109.47519 * 29.96563 * 1 2 3 29 29 H 1.09000 * 109.47383 * 149.96485 * 1 2 3 30 30 H 1.08010 * 119.68523 * 359.96777 * 5 4 3 31 31 H 1.08004 * 119.69162 * 179.72893 * 6 5 4 32 32 H 0.97000 * 120.00078 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47055 * 299.99572 * 11 10 8 34 34 H 1.08997 * 109.47515 * 59.99801 * 11 10 8 35 35 H 1.08995 * 109.46837 * 299.99890 * 12 11 10 36 36 H 1.08997 * 109.47179 * 59.99487 * 12 11 10 37 37 H 1.08998 * 109.47155 * 300.00390 * 13 12 11 38 38 H 1.09004 * 109.46997 * 60.00114 * 13 12 11 39 39 H 1.08992 * 109.47047 * 95.12500 * 15 14 13 40 40 H 1.08998 * 109.47150 * 215.12573 * 15 14 13 41 41 H 1.09004 * 109.46756 * 335.12088 * 15 14 13 42 42 H 0.97000 * 119.99670 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.07361 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 -0.0005 5 6 4.5762 1.8951 0.0050 6 6 5.8863 1.5399 -0.0011 7 6 6.2597 0.1885 -0.0015 8 6 7.6874 -0.1854 -0.0016 9 8 8.0087 -1.3581 -0.0024 10 7 8.6351 0.7728 -0.0008 11 6 10.0522 0.4015 -0.0004 12 6 10.9112 1.6677 0.0011 13 6 12.3912 1.2800 0.0022 14 7 13.2137 2.4923 0.0030 15 6 13.6240 3.0983 1.2721 16 6 13.5990 3.0591 -1.1826 17 1 13.0298 2.8714 -2.0810 18 6 14.7211 3.8749 -1.2296 19 7 15.5564 3.9044 -0.2128 20 14 15.0457 4.9309 -2.7359 21 1 13.9118 5.8685 -2.9367 22 1 16.2984 5.7034 -2.5382 23 1 15.1852 4.0597 -3.9304 24 6 5.2789 -0.7989 -0.0013 25 6 3.9368 -0.4403 -0.0003 26 16 2.4671 -1.4107 -0.0006 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8896 -0.5144 30 1 4.3056 2.9408 0.0100 31 1 6.6482 2.3054 -0.0012 32 1 8.3789 1.7084 -0.0006 33 1 10.2731 -0.1879 0.8895 34 1 10.2739 -0.1873 -0.8904 35 1 10.6905 2.2575 -0.8885 36 1 10.6895 2.2562 0.8913 37 1 12.6117 0.6903 0.8920 38 1 12.6133 0.6913 -0.8880 39 1 14.6174 2.7398 1.5415 40 1 13.6454 4.1830 1.1667 41 1 12.9143 2.8231 2.0523 42 1 16.3403 4.4748 -0.2455 43 1 5.5605 -1.8415 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707415898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:04 Heat of formation + Delta-G solvation = 16.764356 kcal Electronic energy + Delta-G solvation = -24322.742268 eV Core-core repulsion = 20687.079841 eV Total energy + Delta-G solvation = -3635.662427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.77495 -40.64400 -38.09701 -37.77804 -36.26828 -33.88071 -32.81649 -32.33996 -31.60975 -29.55638 -27.92387 -26.96473 -25.39426 -24.45463 -23.27215 -22.54119 -22.04759 -21.30446 -19.80640 -18.71437 -18.63059 -17.48865 -17.02182 -16.77957 -16.73563 -16.29070 -16.23993 -15.64193 -15.52320 -15.09664 -14.97791 -14.68259 -14.55686 -14.34944 -14.22993 -14.01703 -13.60275 -13.36743 -13.13263 -13.03150 -12.75752 -12.63223 -12.48929 -12.45429 -12.29488 -12.08919 -12.01656 -11.83225 -11.46457 -11.33204 -11.23025 -10.78363 -10.60776 -10.22002 -9.75367 -9.27414 -8.75520 -7.80434 -5.29872 -1.01727 -0.02121 0.08132 0.56034 0.81529 1.48330 1.50018 1.56743 1.83741 2.04736 2.53285 2.61964 2.77698 3.32800 3.42534 3.55304 3.66741 3.84488 3.96260 4.02142 4.14481 4.21186 4.34063 4.48420 4.56914 4.64338 4.67321 4.67864 4.79747 4.86840 4.88576 4.93893 4.98993 5.05139 5.12987 5.25638 5.31429 5.35776 5.45041 5.53368 5.65898 5.73961 6.35189 6.44674 6.45845 7.08558 7.17801 7.90276 8.33789 9.22493 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.001788 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.772078 B =15658.248613 C =16207.089801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.100 3.900 3 N -0.502 5.502 4 C 0.094 3.906 5 C -0.075 4.075 6 C -0.065 4.065 7 C -0.131 4.131 8 C 0.559 3.441 9 O -0.578 6.578 10 N -0.707 5.707 11 C 0.131 3.869 12 C -0.129 4.129 13 C 0.149 3.851 14 N -0.620 5.620 15 C 0.176 3.824 16 C -0.261 4.261 17 H 0.072 0.928 18 C -0.056 4.056 19 N -0.941 5.941 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.276 1.276 24 C -0.010 4.010 25 C -0.222 4.222 26 S 0.140 5.860 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.002 0.998 40 H 0.014 0.986 41 H 0.033 0.967 42 H 0.247 0.753 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.890 -7.695 1.932 33.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.218 5.218 4 C -0.028 4.028 5 C -0.096 4.096 6 C -0.087 4.087 7 C -0.138 4.138 8 C 0.347 3.653 9 O -0.459 6.459 10 N -0.359 5.359 11 C 0.007 3.993 12 C -0.169 4.169 13 C 0.023 3.977 14 N -0.344 5.344 15 C 0.031 3.969 16 C -0.391 4.391 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.588 5.588 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.202 1.202 24 C -0.033 4.033 25 C -0.340 4.340 26 S 0.397 5.603 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.179 0.821 31 H 0.185 0.815 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -33.053 -8.986 1.961 34.309 hybrid contribution 1.395 1.670 -0.639 2.268 sum -31.657 -7.316 1.322 32.519 Atomic orbital electron populations 1.20847 0.81736 1.06103 1.05930 1.27645 1.03611 0.90453 0.96628 1.66257 1.04028 1.32358 1.19126 1.19717 0.89890 0.92174 1.01033 1.20560 0.89900 0.99596 0.99511 1.21074 0.96821 0.94698 0.96081 1.19786 0.91986 0.94786 1.07210 1.18292 0.85889 0.85174 0.75968 1.90772 1.83515 1.19665 1.51979 1.45869 1.06170 1.10191 1.73677 1.21258 0.78677 0.97403 1.01999 1.22174 0.95990 0.96267 1.02494 1.20782 0.89452 0.87744 0.99759 1.44141 1.59662 1.27865 1.02689 1.20538 0.95332 0.95654 0.85402 1.19497 1.06039 1.24687 0.88924 0.90981 1.25816 0.95783 1.03145 1.00369 1.70237 1.13534 1.41991 1.33016 0.85326 0.76742 0.78802 0.79481 1.20254 1.22281 1.20233 1.20433 0.88650 1.00388 0.93870 1.23933 0.99419 0.97666 1.13016 1.83907 0.93807 1.09559 1.73062 0.87221 0.88302 0.87301 0.82083 0.81501 0.74762 0.91507 0.92009 0.91957 0.91377 0.93219 0.93814 0.97981 0.96671 0.94816 0.94365 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.44 71.23 0.74 0.30 16 2 C 0.10 1.41 7.29 88.66 0.65 2.06 16 3 N -0.50 -9.86 10.56 -182.21 -1.92 -11.79 16 4 C 0.09 1.93 7.00 39.95 0.28 2.21 16 5 C -0.08 -1.26 10.03 22.43 0.23 -1.04 16 6 C -0.07 -1.04 9.44 22.17 0.21 -0.83 16 7 C -0.13 -2.80 5.87 -20.11 -0.12 -2.92 16 8 C 0.56 14.47 7.76 86.71 0.67 15.14 16 9 O -0.58 -19.38 16.34 -4.00 -0.07 -19.45 16 10 N -0.71 -15.87 5.51 -466.22 -2.57 -18.44 16 11 C 0.13 3.44 5.67 86.38 0.49 3.93 16 12 C -0.13 -3.84 5.65 30.60 0.17 -3.66 16 13 C 0.15 5.72 5.64 86.38 0.49 6.20 16 14 N -0.62 -30.43 2.92 -726.94 -2.12 -32.55 16 15 C 0.18 8.57 8.98 127.77 1.15 9.72 16 16 C -0.26 -14.11 9.65 84.03 0.81 -13.29 16 17 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 18 C -0.06 -3.14 5.10 84.86 0.43 -2.71 16 19 N -0.94 -55.85 10.71 21.65 0.23 -55.62 16 20 Si 0.97 44.73 29.57 68.60 2.03 46.76 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.01 -0.23 9.62 22.66 0.22 -0.01 16 25 C -0.22 -4.52 6.54 22.90 0.15 -4.37 16 26 S 0.14 2.04 23.11 -56.49 -1.31 0.73 16 27 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.17 1.65 6.38 -2.91 -0.02 1.63 16 32 H 0.41 6.88 6.49 -92.71 -0.60 6.27 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.04 1.71 8.04 -2.38 -0.02 1.69 16 39 H 0.00 0.10 7.34 -2.39 -0.02 0.08 16 40 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 41 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.14 3.10 7.64 -2.91 -0.02 3.08 16 Total: -1.00 -73.30 375.29 1.28 -72.03 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.43 Total: 7.62 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.57 Total: 10.70 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -6.38 Total: -118.39 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -73.30 1.28 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707415898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.790 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds