Wall clock time and date at job start Tue Mar 31 2020 18:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47162 * 2 1 4 4 C 1.36935 * 120.00233 * 275.30962 * 3 2 1 5 5 H 1.07998 * 119.99999 * 37.57965 * 4 3 2 6 6 C 1.38815 * 120.00306 * 217.57606 * 4 3 2 7 7 N 1.31615 * 119.99701 * 21.42286 * 6 4 3 8 8 Si 1.86793 * 120.00073 * 201.42344 * 6 4 3 9 9 H 1.48504 * 109.47190 * 59.99841 * 8 6 4 10 10 H 1.48495 * 109.47120 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47405 * 300.00115 * 8 6 4 12 12 C 1.46504 * 119.99795 * 95.30623 * 3 2 1 13 13 C 1.52997 * 109.47439 * 270.00065 * 12 3 2 14 14 C 1.52996 * 109.47388 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47148 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99950 * 180.02562 * 15 14 13 17 17 O 1.21610 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.47390 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.38882 * 120.01862 * 359.97073 * 18 16 15 20 20 C 1.38232 * 120.45936 * 180.02562 * 19 18 16 21 21 C 1.37957 * 120.27857 * 0.02562 * 20 19 18 22 22 C 1.39179 * 120.44979 * 359.96168 * 21 20 19 23 23 S 1.76147 * 131.63868 * 180.02562 * 22 21 20 24 24 C 1.70674 * 90.71348 * 179.97438 * 23 22 21 25 25 N 1.28145 * 111.38120 * 359.97438 * 24 23 22 26 26 C 1.33647 * 118.01787 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46678 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47368 * 299.99758 * 1 2 3 29 29 H 1.08997 * 109.47581 * 59.99942 * 1 2 3 30 30 H 1.09003 * 109.47368 * 240.00242 * 2 1 3 31 31 H 1.08997 * 109.47581 * 120.00058 * 2 1 3 32 32 H 0.97001 * 120.00150 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47079 * 150.00702 * 12 3 2 34 34 H 1.08997 * 109.47224 * 30.00803 * 12 3 2 35 35 H 1.09003 * 109.47125 * 59.99899 * 13 12 3 36 36 H 1.08997 * 109.47515 * 300.00559 * 13 12 3 37 37 H 1.08996 * 109.47243 * 60.00216 * 14 13 12 38 38 H 1.09003 * 109.46925 * 299.99979 * 14 13 12 39 39 H 0.97001 * 119.99910 * 359.97438 * 15 14 13 40 40 H 1.08001 * 119.76410 * 0.02562 * 19 18 16 41 41 H 1.08001 * 119.85637 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.76867 * 180.02562 * 21 20 19 43 43 H 1.08000 * 124.30994 * 179.73255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3025 2.7982 -0.6490 8 14 3.0993 4.2795 -2.6584 9 1 1.9626 5.1785 -2.3344 10 1 4.3616 5.0615 -2.6660 11 1 2.8844 3.6726 -3.9966 12 6 2.3731 2.0327 1.2634 13 6 1.1425 2.7382 1.8366 14 6 1.5132 3.4191 3.1556 15 7 0.3346 4.0942 3.7048 16 6 0.4246 4.7659 4.8697 17 8 1.4839 4.8113 5.4653 18 6 -0.7612 5.4446 5.4226 19 6 -1.9713 5.3927 4.7431 20 6 -3.0890 6.0264 5.2530 21 6 -3.0136 6.7186 6.4439 22 6 -1.8135 6.7863 7.1455 23 16 -1.3882 7.5713 8.6640 24 6 0.2195 7.0151 8.5259 25 7 0.3853 6.3258 7.4584 26 6 -0.6673 6.1521 6.6535 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0487 3.4033 -0.7828 33 1 3.1615 2.7642 1.0861 34 1 2.7254 1.2834 1.9722 35 1 0.3540 2.0068 2.0139 36 1 0.7901 3.4876 1.1278 37 1 2.3014 4.1506 2.9779 38 1 1.8657 2.6700 3.8646 39 1 -0.5103 4.0583 3.2296 40 1 -2.0395 4.8535 3.8098 41 1 -4.0253 5.9794 4.7166 42 1 -3.8920 7.2103 6.8350 43 1 0.9989 7.2214 9.2445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707452200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:24 Heat of formation + Delta-G solvation = 43.794996 kcal Electronic energy + Delta-G solvation = -25263.321041 eV Core-core repulsion = 21628.830750 eV Total energy + Delta-G solvation = -3634.490291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.95358 -39.06534 -37.12046 -36.40154 -34.71494 -32.16894 -31.84478 -30.71430 -30.23692 -28.48294 -25.76669 -25.11186 -24.23507 -23.34922 -21.76873 -21.00673 -20.80973 -20.08057 -18.77920 -17.26733 -16.74163 -16.65365 -16.02568 -15.53418 -15.45665 -15.18640 -15.02434 -14.70016 -14.08059 -13.97939 -13.81616 -13.40850 -13.30403 -12.95969 -12.60255 -12.42388 -12.34222 -12.21659 -11.58971 -11.57825 -11.38665 -11.13050 -11.00991 -10.72849 -10.56227 -10.47171 -10.41626 -10.06342 -9.94189 -9.69347 -9.54250 -9.50693 -9.12242 -8.82199 -8.45526 -8.43874 -6.55008 -5.77044 -3.36408 -0.09501 0.50285 0.90883 1.35911 2.08045 2.76568 3.25798 3.37128 3.43874 3.44536 3.63786 3.69808 4.24551 4.46954 4.49217 4.61935 4.79739 4.83291 5.08197 5.26821 5.31375 5.42841 5.62513 5.68871 5.71093 5.83792 5.88023 6.00183 6.10593 6.18136 6.30435 6.36949 6.45002 6.49778 6.60201 6.76760 6.80940 6.92204 7.10835 7.19005 7.37517 7.67432 7.70144 7.83452 8.38058 8.54015 9.21254 9.83658 10.42696 11.22468 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002387 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.408666 B =11726.326000 C =12045.031009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.722 5.722 16 C 0.544 3.456 17 O -0.508 6.508 18 C -0.074 4.074 19 C -0.073 4.073 20 C -0.108 4.108 21 C -0.050 4.050 22 C -0.191 4.191 23 S 0.087 5.913 24 C 0.072 3.928 25 N -0.436 5.436 26 C 0.128 3.872 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 8.212 17.317 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.001 4.001 15 N -0.374 5.374 16 C 0.330 3.670 17 O -0.383 6.383 18 C -0.080 4.080 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.073 4.073 22 C -0.309 4.309 23 S 0.341 5.659 24 C -0.233 4.233 25 N -0.146 5.146 26 C 0.005 3.995 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.591 8.678 18.411 25.639 hybrid contribution -0.468 0.354 -1.584 1.689 sum -16.059 9.032 16.827 24.953 Atomic orbital electron populations 1.22369 1.00204 0.98867 1.01079 1.20844 0.91656 0.87420 0.98716 1.43739 1.76076 1.08166 1.02492 1.18928 1.04656 1.21346 0.94186 0.92395 1.25191 0.94213 1.01289 0.98058 1.69986 1.03174 1.37274 1.42348 0.86491 0.76935 0.82405 0.81658 1.20939 1.21602 1.20743 1.20794 0.94430 0.96666 0.85746 1.22540 1.02411 0.99858 0.93867 1.21500 0.86884 0.96134 0.95592 1.46113 1.14609 1.53751 1.22970 1.17978 0.87960 0.79635 0.81467 1.90861 1.28871 1.59597 1.59006 1.19740 0.94896 0.99999 0.93392 1.21315 0.91254 0.97531 0.99294 1.21089 0.99059 0.97287 0.95482 1.20485 0.94909 0.97777 0.94093 1.23894 0.99600 1.06676 1.00779 1.83973 1.09067 1.53855 1.18982 1.28452 0.99550 0.97153 0.98102 1.65962 1.30403 1.15070 1.03147 1.18786 0.86805 0.98577 0.95313 0.94654 0.93814 0.93278 0.93908 0.94843 0.93432 0.88728 0.95641 0.93044 0.91700 0.91361 0.91853 0.76946 0.84045 0.83870 0.84694 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.21 37.15 0.38 -2.55 16 2 C 0.14 2.93 6.44 -4.05 -0.03 2.90 16 3 N -0.58 -14.20 2.43 -173.24 -0.42 -14.62 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.14 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.37 11.47 55.49 0.64 -24.74 16 8 Si 0.90 21.38 29.60 -169.99 -5.03 16.35 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.42 5.33 -4.04 -0.02 3.40 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 15 N -0.72 -10.65 5.50 -61.40 -0.34 -10.99 16 16 C 0.54 8.98 7.76 -12.54 -0.10 8.88 16 17 O -0.51 -10.46 15.78 5.27 0.08 -10.37 16 18 C -0.07 -1.00 5.92 -104.38 -0.62 -1.62 16 19 C -0.07 -0.68 9.50 -39.35 -0.37 -1.06 16 20 C -0.11 -0.79 10.02 -39.69 -0.40 -1.18 16 21 C -0.05 -0.40 10.05 -39.34 -0.40 -0.79 16 22 C -0.19 -2.01 6.55 -38.60 -0.25 -2.27 16 23 S 0.09 0.72 23.18 -107.50 -2.49 -1.78 16 24 C 0.07 0.72 12.12 51.22 0.62 1.34 16 25 N -0.44 -6.37 9.43 -12.74 -0.12 -6.49 16 26 C 0.13 1.78 6.73 -84.89 -0.57 1.21 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 33 H 0.10 2.47 5.52 -51.93 -0.29 2.18 16 34 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 35 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.40 4.61 6.47 -40.82 -0.26 4.34 16 40 H 0.14 1.00 6.34 -52.49 -0.33 0.66 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -34.33 371.56 -9.98 -44.31 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.74 Total: 2.09 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.16 Total: 0.63 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.24 Total: -56.83 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.49 Total: -1.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.33 -9.98 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.102 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds