Wall clock time and date at job start Tue Mar 31 2020 18:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47162 * 2 1 4 4 C 1.36935 * 120.00233 * 275.30962 * 3 2 1 5 5 H 1.07998 * 119.99999 * 37.57965 * 4 3 2 6 6 C 1.38815 * 120.00306 * 217.57606 * 4 3 2 7 7 N 1.31615 * 119.99701 * 21.42286 * 6 4 3 8 8 Si 1.86793 * 120.00073 * 201.42344 * 6 4 3 9 9 H 1.48504 * 109.47190 * 59.99841 * 8 6 4 10 10 H 1.48495 * 109.47120 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47405 * 300.00115 * 8 6 4 12 12 C 1.46504 * 119.99795 * 95.30623 * 3 2 1 13 13 C 1.52997 * 109.47439 * 270.00065 * 12 3 2 14 14 C 1.52996 * 109.47388 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47148 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99950 * 180.02562 * 15 14 13 17 17 O 1.21610 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.47390 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.38882 * 120.01862 * 359.97073 * 18 16 15 20 20 C 1.38232 * 120.45936 * 180.02562 * 19 18 16 21 21 C 1.37957 * 120.27857 * 0.02562 * 20 19 18 22 22 C 1.39179 * 120.44979 * 359.96168 * 21 20 19 23 23 S 1.76147 * 131.63868 * 180.02562 * 22 21 20 24 24 C 1.70674 * 90.71348 * 179.97438 * 23 22 21 25 25 N 1.28145 * 111.38120 * 359.97438 * 24 23 22 26 26 C 1.33647 * 118.01787 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46678 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47368 * 299.99758 * 1 2 3 29 29 H 1.08997 * 109.47581 * 59.99942 * 1 2 3 30 30 H 1.09003 * 109.47368 * 240.00242 * 2 1 3 31 31 H 1.08997 * 109.47581 * 120.00058 * 2 1 3 32 32 H 0.97001 * 120.00150 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47079 * 150.00702 * 12 3 2 34 34 H 1.08997 * 109.47224 * 30.00803 * 12 3 2 35 35 H 1.09003 * 109.47125 * 59.99899 * 13 12 3 36 36 H 1.08997 * 109.47515 * 300.00559 * 13 12 3 37 37 H 1.08996 * 109.47243 * 60.00216 * 14 13 12 38 38 H 1.09003 * 109.46925 * 299.99979 * 14 13 12 39 39 H 0.97001 * 119.99910 * 359.97438 * 15 14 13 40 40 H 1.08001 * 119.76410 * 0.02562 * 19 18 16 41 41 H 1.08001 * 119.85637 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.76867 * 180.02562 * 21 20 19 43 43 H 1.08000 * 124.30994 * 179.73255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3025 2.7982 -0.6490 8 14 3.0993 4.2795 -2.6584 9 1 1.9626 5.1785 -2.3344 10 1 4.3616 5.0615 -2.6660 11 1 2.8844 3.6726 -3.9966 12 6 2.3731 2.0327 1.2634 13 6 1.1425 2.7382 1.8366 14 6 1.5132 3.4191 3.1556 15 7 0.3346 4.0942 3.7048 16 6 0.4246 4.7659 4.8697 17 8 1.4839 4.8113 5.4653 18 6 -0.7612 5.4446 5.4226 19 6 -1.9713 5.3927 4.7431 20 6 -3.0890 6.0264 5.2530 21 6 -3.0136 6.7186 6.4439 22 6 -1.8135 6.7863 7.1455 23 16 -1.3882 7.5713 8.6640 24 6 0.2195 7.0151 8.5259 25 7 0.3853 6.3258 7.4584 26 6 -0.6673 6.1521 6.6535 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0487 3.4033 -0.7828 33 1 3.1615 2.7642 1.0861 34 1 2.7254 1.2834 1.9722 35 1 0.3540 2.0068 2.0139 36 1 0.7901 3.4876 1.1278 37 1 2.3014 4.1506 2.9779 38 1 1.8657 2.6700 3.8646 39 1 -0.5103 4.0583 3.2296 40 1 -2.0395 4.8535 3.8098 41 1 -4.0253 5.9794 4.7166 42 1 -3.8920 7.2103 6.8350 43 1 0.9989 7.2214 9.2445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707452200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:23 Heat of formation + Delta-G solvation = 21.364226 kcal Electronic energy + Delta-G solvation = -25264.293712 eV Core-core repulsion = 21628.830750 eV Total energy + Delta-G solvation = -3635.462962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.80534 -40.23837 -38.17152 -37.86754 -36.17961 -33.81708 -33.28710 -31.93689 -30.95477 -30.16295 -27.27265 -26.08635 -25.54028 -24.61487 -22.78002 -22.30400 -22.12265 -21.66729 -19.72631 -18.61807 -18.14225 -17.48757 -17.08312 -16.99034 -16.62484 -16.36234 -15.99755 -15.98034 -15.58873 -15.50104 -14.86916 -14.82232 -14.56975 -14.23883 -14.04476 -13.59215 -13.25144 -13.19840 -13.11739 -12.94461 -12.73635 -12.71361 -12.54408 -12.35118 -12.27253 -12.12832 -11.93020 -11.46772 -11.24640 -11.18693 -11.07104 -10.49202 -10.47771 -10.16376 -9.82375 -9.16413 -8.54055 -7.80035 -5.44347 -0.86335 -0.21615 0.25572 0.62720 1.36440 1.46084 1.48929 1.55110 1.74499 2.07875 2.51825 2.72088 3.01628 3.25148 3.47794 3.66264 3.79727 3.90881 4.14892 4.17054 4.17629 4.27792 4.45339 4.49482 4.53769 4.58857 4.73240 4.78530 4.89984 4.97724 5.01390 5.02975 5.05114 5.17144 5.18465 5.35060 5.38710 5.46048 5.58796 5.62076 5.70581 5.84653 6.48781 6.49498 6.66562 7.18627 7.20164 7.89616 8.42426 9.14646 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002387 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.408666 B =11726.326000 C =12045.031009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.263 4.263 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.150 3.850 13 C -0.120 4.120 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.542 3.458 17 O -0.563 6.563 18 C -0.118 4.118 19 C -0.058 4.058 20 C -0.101 4.101 21 C -0.038 4.038 22 C -0.214 4.214 23 S 0.155 5.845 24 C 0.063 3.937 25 N -0.500 5.500 26 C 0.096 3.904 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.413 0.587 40 H 0.164 0.836 41 H 0.187 0.813 42 H 0.172 0.828 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 8.984 17.753 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.393 4.393 5 H 0.075 0.925 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.224 1.224 11 H -0.199 1.199 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.011 3.989 15 N -0.363 5.363 16 C 0.330 3.670 17 O -0.442 6.442 18 C -0.124 4.124 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.060 4.060 22 C -0.333 4.333 23 S 0.409 5.591 24 C -0.239 4.239 25 N -0.213 5.213 26 C -0.026 4.026 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.181 0.819 41 H 0.204 0.796 42 H 0.189 0.811 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.928 9.442 18.844 29.006 hybrid contribution 0.773 0.102 -1.622 1.799 sum -19.154 9.544 17.223 27.470 Atomic orbital electron populations 1.22165 0.97069 1.00812 1.00946 1.21005 0.94003 0.85637 0.98551 1.43984 1.76486 1.09578 1.02217 1.19156 1.04071 1.21249 0.94854 0.92511 1.25879 0.94012 1.03416 1.00192 1.70130 1.03816 1.38095 1.44295 0.85548 0.76521 0.79884 0.79774 1.20233 1.22375 1.19924 1.20684 0.95298 0.96074 0.85601 1.22159 1.00766 0.99576 0.93561 1.21137 0.87337 0.95375 0.95076 1.45866 1.14456 1.53182 1.22791 1.18567 0.88499 0.78925 0.81009 1.90815 1.31205 1.61685 1.60533 1.19635 0.95027 1.02781 0.94971 1.21663 0.90330 0.96574 0.99323 1.21590 0.99717 0.95674 0.95242 1.21057 0.94882 0.96411 0.93625 1.24293 0.99721 1.07092 1.02231 1.83614 1.06546 1.51981 1.16947 1.28952 1.01709 0.95887 0.97386 1.65970 1.32423 1.17753 1.05124 1.19065 0.87949 0.99791 0.95835 0.91666 0.92923 0.94335 0.95287 0.93868 0.94088 0.92362 0.95543 0.90807 0.92667 0.94036 0.92378 0.74917 0.81880 0.79564 0.81058 0.75282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 10.21 71.98 0.73 -4.21 16 2 C 0.13 5.46 6.44 86.38 0.56 6.02 16 3 N -0.60 -29.33 2.43 -702.01 -1.71 -31.04 16 4 C -0.26 -14.14 9.45 84.03 0.79 -13.35 16 5 H 0.06 3.03 7.92 -2.91 -0.02 3.00 16 6 C -0.04 -2.09 4.95 84.86 0.42 -1.67 16 7 N -0.92 -54.44 11.47 21.65 0.25 -54.19 16 8 Si 0.95 44.53 29.60 68.60 2.03 46.56 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.15 6.97 5.33 86.38 0.46 7.43 16 13 C -0.12 -4.43 5.65 30.59 0.17 -4.26 16 14 C 0.14 4.83 5.67 86.38 0.49 5.32 16 15 N -0.71 -21.12 5.50 -466.41 -2.57 -23.69 16 16 C 0.54 18.67 7.76 86.65 0.67 19.34 16 17 O -0.56 -24.92 15.78 -4.06 -0.06 -24.98 16 18 C -0.12 -3.20 5.92 -19.71 -0.12 -3.31 16 19 C -0.06 -0.96 9.50 22.42 0.21 -0.74 16 20 C -0.10 -1.04 10.02 22.20 0.22 -0.82 16 21 C -0.04 -0.45 10.05 22.43 0.23 -0.23 16 22 C -0.21 -4.14 6.55 22.91 0.15 -3.99 16 23 S 0.15 2.22 23.18 -56.49 -1.31 0.91 16 24 C 0.06 1.26 12.12 130.78 1.58 2.85 16 25 N -0.50 -15.31 9.43 -194.20 -1.83 -17.14 16 26 C 0.10 2.71 6.73 40.28 0.27 2.98 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.05 1.62 6.64 -2.39 -0.02 1.61 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.06 3.18 5.52 -2.39 -0.01 3.17 16 34 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 35 H 0.07 2.39 6.64 -2.39 -0.02 2.38 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.41 9.08 6.47 -92.71 -0.60 8.48 16 40 H 0.16 1.78 6.34 -2.91 -0.02 1.76 16 41 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.23 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -80.14 371.56 2.09 -78.05 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.44 Total: 14.15 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.85 Total: 11.36 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.86 Total: -126.06 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.91 kcal Total: -80.14 2.09 -78.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.418 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds