Wall clock time and date at job start Tue Mar 31 2020 18:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21622 * 120.00529 * 359.72046 * 16 15 14 18 18 C 1.47202 * 119.99479 * 179.72238 * 16 15 14 19 19 C 1.33791 * 124.64727 * 179.72195 * 18 16 15 20 20 C 1.40105 * 115.49661 * 179.79316 * 19 18 16 21 21 C 1.41721 * 129.98469 * 180.18977 * 20 19 18 22 22 C 1.36040 * 119.33451 * 180.30311 * 21 20 19 23 23 N 1.32309 * 121.57889 * 0.02562 * 22 21 20 24 24 C 1.31362 * 122.05709 * 359.97438 * 23 22 21 25 25 C 1.39729 * 120.59868 * 0.02562 * 24 23 22 26 26 S 1.75531 * 124.65109 * 0.02562 * 18 16 15 27 27 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 28 28 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 31 31 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 32 32 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 34 34 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 35 35 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 36 36 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 37 37 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 38 38 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 39 39 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 40 40 H 1.07995 * 122.24997 * 359.97438 * 19 18 16 41 41 H 1.07993 * 120.33293 * 0.28667 * 21 20 19 42 42 H 1.07999 * 119.21068 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.69939 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4849 4.8132 5.4641 18 6 -0.7570 5.4520 5.4169 19 6 -0.7731 6.1425 6.5627 20 6 -2.0037 6.7202 6.9015 21 6 -2.3623 7.5060 8.0251 22 6 -3.6404 7.9571 8.1424 23 7 -4.5594 7.6795 7.2319 24 6 -4.2911 6.9568 6.1683 25 6 -3.0065 6.4483 5.9593 26 16 -2.3414 5.4665 4.6614 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.0488 3.4031 -0.7832 33 1 3.1617 2.7642 1.0859 34 1 2.7255 1.2834 1.9721 35 1 0.3541 2.0069 2.0139 36 1 0.7903 3.4876 1.1276 37 1 2.3016 4.1497 2.9790 38 1 1.8652 2.6687 3.8647 39 1 -0.5102 4.0580 3.2297 40 1 0.1043 6.2498 7.1832 41 1 -1.6284 7.7440 8.7807 42 1 -3.9113 8.5561 8.9992 43 1 -5.0706 6.7538 5.4488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707452300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:11 Heat of formation + Delta-G solvation = 33.426234 kcal Electronic energy + Delta-G solvation = -24802.301140 eV Core-core repulsion = 21167.361226 eV Total energy + Delta-G solvation = -3634.939914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86533 -39.72794 -36.70844 -36.28148 -34.91925 -31.92460 -31.88892 -31.67352 -30.59230 -28.59000 -26.16445 -24.88876 -24.36088 -23.51265 -21.89568 -21.16372 -20.53041 -20.07529 -18.82011 -17.21057 -16.95006 -16.65252 -16.41183 -15.68902 -15.50639 -15.02366 -14.92283 -14.74084 -14.27677 -14.21039 -14.13896 -13.63511 -13.46804 -13.29430 -12.68773 -12.40536 -12.39937 -12.23833 -11.64161 -11.52117 -11.35000 -11.20375 -11.07174 -10.79127 -10.65969 -10.47566 -10.41548 -10.26985 -10.12821 -10.01010 -9.69301 -9.59005 -9.52010 -9.02351 -8.50397 -8.33509 -6.59654 -5.81468 -3.40692 -0.22922 0.53943 0.86776 1.33204 1.57989 2.93804 2.97821 3.30470 3.32501 3.41907 3.43722 3.97096 4.13528 4.26862 4.42612 4.44927 4.61437 4.92763 5.06923 5.15156 5.18954 5.31616 5.36859 5.56675 5.60146 5.71902 5.78809 5.91936 6.03161 6.07815 6.16004 6.30412 6.36529 6.38567 6.53262 6.66363 6.70753 6.88862 7.04154 7.14249 7.37048 7.43901 7.63418 7.80297 8.00314 8.49751 9.16920 9.79141 10.37918 11.18075 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.002316 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.234203 B =12086.378705 C =12253.224011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.259 4.259 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.714 5.714 16 C 0.579 3.421 17 O -0.523 6.523 18 C -0.197 4.197 19 C -0.059 4.059 20 C -0.043 4.043 21 C -0.120 4.120 22 C 0.077 3.923 23 N -0.468 5.468 24 C 0.160 3.840 25 C -0.200 4.200 26 S 0.162 5.838 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.026 0.974 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.161 0.839 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.377 6.968 15.875 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.189 4.189 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.363 3.637 17 O -0.400 6.400 18 C -0.318 4.318 19 C -0.092 4.092 20 C -0.059 4.059 21 C -0.141 4.141 22 C -0.072 4.072 23 N -0.177 5.177 24 C -0.010 4.010 25 C -0.319 4.319 26 S 0.428 5.572 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.769 6.735 15.083 22.837 hybrid contribution 0.935 1.075 0.292 1.454 sum -14.834 7.810 15.374 22.747 Atomic orbital electron populations 1.22369 1.00154 0.98921 1.01100 1.20854 0.91672 0.87367 0.98758 1.43748 1.76029 1.08203 1.02470 1.19017 1.04652 1.21133 0.94127 0.92264 1.25196 0.94224 1.01334 0.98070 1.70007 1.03205 1.37229 1.42380 0.86373 0.77696 0.82296 0.81289 1.20086 1.21411 1.21612 1.20790 0.94295 0.96690 0.85834 1.22581 1.02638 0.99983 0.93672 1.21619 0.86467 0.96295 0.95922 1.46106 1.14970 1.52850 1.22538 1.17091 0.86331 0.78874 0.81403 1.90838 1.28314 1.61203 1.59681 1.24142 0.98787 1.07529 1.01297 1.20170 0.97856 0.95306 0.95824 1.18366 0.92580 0.99169 0.95778 1.21814 0.98324 0.97148 0.96858 1.22182 0.89069 0.98184 0.97759 1.67723 1.35696 1.12272 1.01999 1.22371 0.92242 0.91729 0.94691 1.24144 1.00072 1.06572 1.01106 1.84230 0.99939 1.50976 1.22089 0.93239 0.94606 0.93836 0.93853 0.94824 0.93540 0.88676 0.95571 0.92896 0.91557 0.90941 0.91414 0.76814 0.82169 0.83895 0.82148 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.14 2.87 6.44 -4.04 -0.03 2.84 16 3 N -0.58 -13.90 2.43 -173.23 -0.42 -14.32 16 4 C -0.26 -6.83 9.45 -15.06 -0.14 -6.98 16 5 H 0.06 1.57 7.92 -52.48 -0.42 1.16 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.91 11.47 55.49 0.64 -24.27 16 8 Si 0.89 21.06 29.60 -169.99 -5.03 16.03 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.15 3.32 5.33 -4.05 -0.02 3.30 16 13 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 14 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 15 N -0.71 -9.94 5.55 -61.45 -0.34 -10.28 16 16 C 0.58 8.45 7.80 -12.62 -0.10 8.35 16 17 O -0.52 -9.32 16.73 5.26 0.09 -9.23 16 18 C -0.20 -2.32 6.33 -37.50 -0.24 -2.56 16 19 C -0.06 -0.63 9.81 -40.44 -0.40 -1.03 16 20 C -0.04 -0.42 5.91 -107.11 -0.63 -1.05 16 21 C -0.12 -0.91 10.13 -39.04 -0.40 -1.31 16 22 C 0.08 0.59 11.06 -18.14 -0.20 0.39 16 23 N -0.47 -4.37 10.34 -13.41 -0.14 -4.51 16 24 C 0.16 1.39 11.24 -17.20 -0.19 1.20 16 25 C -0.20 -1.91 6.54 -38.27 -0.25 -2.16 16 26 S 0.16 1.53 22.26 -107.50 -2.39 -0.87 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.73 6.64 -51.93 -0.34 0.38 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.10 2.40 5.52 -51.93 -0.29 2.12 16 34 H 0.03 0.55 7.86 -51.92 -0.41 0.14 16 35 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.40 4.70 7.53 -40.82 -0.31 4.40 16 40 H 0.16 1.59 7.96 -52.49 -0.42 1.18 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -31.18 375.41 -10.29 -41.47 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.87 Total: 2.48 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.48 Total: -2.16 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.26 Total: -53.38 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.39 Total: -0.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.18 -10.29 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.894 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds