Wall clock time and date at job start Tue Mar 31 2020 18:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21622 * 120.00529 * 359.72046 * 16 15 14 18 18 C 1.47202 * 119.99479 * 179.72238 * 16 15 14 19 19 C 1.33791 * 124.64727 * 179.72195 * 18 16 15 20 20 C 1.40105 * 115.49661 * 179.79316 * 19 18 16 21 21 C 1.41721 * 129.98469 * 180.18977 * 20 19 18 22 22 C 1.36040 * 119.33451 * 180.30311 * 21 20 19 23 23 N 1.32309 * 121.57889 * 0.02562 * 22 21 20 24 24 C 1.31362 * 122.05709 * 359.97438 * 23 22 21 25 25 C 1.39729 * 120.59868 * 0.02562 * 24 23 22 26 26 S 1.75531 * 124.65109 * 0.02562 * 18 16 15 27 27 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 28 28 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 31 31 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 32 32 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 34 34 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 35 35 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 36 36 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 37 37 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 38 38 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 39 39 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 40 40 H 1.07995 * 122.24997 * 359.97438 * 19 18 16 41 41 H 1.07993 * 120.33293 * 0.28667 * 21 20 19 42 42 H 1.07999 * 119.21068 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.69939 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4849 4.8132 5.4641 18 6 -0.7570 5.4520 5.4169 19 6 -0.7731 6.1425 6.5627 20 6 -2.0037 6.7202 6.9015 21 6 -2.3623 7.5060 8.0251 22 6 -3.6404 7.9571 8.1424 23 7 -4.5594 7.6795 7.2319 24 6 -4.2911 6.9568 6.1683 25 6 -3.0065 6.4483 5.9593 26 16 -2.3414 5.4665 4.6614 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.0488 3.4031 -0.7832 33 1 3.1617 2.7642 1.0859 34 1 2.7255 1.2834 1.9721 35 1 0.3541 2.0069 2.0139 36 1 0.7903 3.4876 1.1276 37 1 2.3016 4.1497 2.9790 38 1 1.8652 2.6687 3.8647 39 1 -0.5102 4.0580 3.2297 40 1 0.1043 6.2498 7.1832 41 1 -1.6284 7.7440 8.7807 42 1 -3.9113 8.5561 8.9992 43 1 -5.0706 6.7538 5.4488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707452300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:11 Heat of formation + Delta-G solvation = 15.085467 kcal Electronic energy + Delta-G solvation = -24803.096455 eV Core-core repulsion = 21167.361226 eV Total energy + Delta-G solvation = -3635.735230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57074 -40.84737 -38.24102 -37.23930 -36.29077 -33.81596 -33.03756 -32.49731 -31.53872 -30.21620 -27.53734 -26.17988 -25.29077 -24.75645 -22.89719 -22.53332 -22.01103 -21.32079 -19.73519 -18.64119 -17.98183 -17.61905 -17.31727 -17.08482 -16.69638 -16.53090 -15.89794 -15.66722 -15.57256 -15.45924 -14.99703 -14.97888 -14.89059 -14.27843 -14.11573 -14.04290 -13.32905 -13.22114 -13.14494 -12.92877 -12.78545 -12.74661 -12.58825 -12.32537 -12.14224 -12.06895 -11.92620 -11.50225 -11.39092 -11.24174 -11.05197 -10.77923 -10.50097 -10.45022 -10.14292 -9.00737 -8.54400 -7.80688 -5.44604 -1.01823 -0.07276 0.11651 0.57479 0.77501 1.43921 1.48329 1.57325 1.84810 1.89179 2.51097 2.66706 3.23744 3.32399 3.45398 3.56863 3.64802 3.76956 3.80005 4.12809 4.23547 4.30524 4.44110 4.44621 4.52279 4.57174 4.64154 4.72365 4.75678 4.88943 4.90920 4.93574 5.02962 5.04887 5.16294 5.24148 5.34648 5.44539 5.51094 5.61393 5.70689 5.84492 6.24215 6.49020 6.82502 6.87791 7.19581 7.89340 8.41620 9.14093 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.002316 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.234203 B =12086.378705 C =12253.224011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.151 3.849 13 C -0.126 4.126 14 C 0.132 3.868 15 N -0.707 5.707 16 C 0.581 3.419 17 O -0.563 6.563 18 C -0.226 4.226 19 C -0.048 4.048 20 C -0.063 4.063 21 C -0.114 4.114 22 C 0.073 3.927 23 N -0.483 5.483 24 C 0.154 3.846 25 C -0.208 4.208 26 S 0.191 5.809 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.409 0.591 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.191 0.809 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 7.517 16.876 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.220 1.220 12 C 0.024 3.976 13 C -0.166 4.166 14 C 0.008 3.992 15 N -0.358 5.358 16 C 0.367 3.633 17 O -0.443 6.443 18 C -0.346 4.346 19 C -0.081 4.081 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.076 4.076 23 N -0.192 5.192 24 C -0.017 4.017 25 C -0.327 4.327 26 S 0.456 5.544 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.208 0.792 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.376 7.265 16.068 25.468 hybrid contribution 1.663 0.888 0.075 1.887 sum -16.713 8.153 16.143 24.625 Atomic orbital electron populations 1.22173 0.97254 1.00787 1.00856 1.21004 0.93838 0.85675 0.98654 1.43993 1.76428 1.09576 1.02271 1.19200 1.04019 1.21081 0.94817 0.92712 1.25840 0.94069 1.03357 1.00126 1.70132 1.03806 1.38060 1.44187 0.85457 0.77750 0.79635 0.79103 1.19033 1.21721 1.21999 1.20691 0.95132 0.96185 0.85601 1.22213 1.00956 0.99659 0.93742 1.21291 0.86798 0.95836 0.95259 1.45904 1.14746 1.52573 1.22588 1.17402 0.86710 0.78267 0.80903 1.90810 1.30113 1.62671 1.60725 1.23861 0.99159 1.09088 1.02537 1.20308 0.98419 0.94197 0.95218 1.18520 0.92151 1.00180 0.96942 1.22143 0.99021 0.95877 0.96533 1.22714 0.88773 0.97921 0.98146 1.67783 1.36506 1.12471 1.02479 1.22743 0.92404 0.91432 0.95073 1.24324 1.00565 1.06656 1.01123 1.84015 0.97920 1.50837 1.21588 0.94495 0.91678 0.92976 0.95295 0.93641 0.94025 0.92146 0.95157 0.90995 0.92805 0.92950 0.91217 0.75434 0.82013 0.81243 0.79229 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.21 71.98 0.73 -4.18 16 2 C 0.13 5.35 6.44 86.38 0.56 5.91 16 3 N -0.60 -28.62 2.43 -701.99 -1.71 -30.33 16 4 C -0.26 -13.81 9.45 84.03 0.79 -13.01 16 5 H 0.06 2.91 7.92 -2.91 -0.02 2.88 16 6 C -0.04 -1.99 4.95 84.86 0.42 -1.57 16 7 N -0.92 -52.97 11.47 21.65 0.25 -52.73 16 8 Si 0.95 43.86 29.60 68.60 2.03 45.90 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 12 C 0.15 6.70 5.33 86.38 0.46 7.16 16 13 C -0.13 -4.41 5.65 30.60 0.17 -4.23 16 14 C 0.13 4.27 5.67 86.38 0.49 4.76 16 15 N -0.71 -19.39 5.55 -466.58 -2.59 -21.98 16 16 C 0.58 16.97 7.80 86.60 0.68 17.65 16 17 O -0.56 -20.47 16.73 -4.10 -0.07 -20.53 16 18 C -0.23 -5.19 6.33 23.62 0.15 -5.04 16 19 C -0.05 -0.99 9.81 21.71 0.21 -0.78 16 20 C -0.06 -1.11 5.91 -21.47 -0.13 -1.24 16 21 C -0.11 -1.45 10.13 22.62 0.23 -1.22 16 22 C 0.07 0.91 11.06 84.11 0.93 1.84 16 23 N -0.48 -7.90 10.34 -196.33 -2.03 -9.93 16 24 C 0.15 2.34 11.24 85.12 0.96 3.30 16 25 C -0.21 -3.61 6.54 23.12 0.15 -3.46 16 26 S 0.19 3.31 22.26 -56.49 -1.26 2.06 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.05 1.59 6.64 -2.39 -0.02 1.58 16 30 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.05 1.69 7.83 -2.38 -0.02 1.67 16 32 H 0.25 14.04 8.31 -92.72 -0.77 13.27 16 33 H 0.06 3.16 5.52 -2.38 -0.01 3.15 16 34 H 0.03 1.28 7.86 -2.38 -0.02 1.26 16 35 H 0.07 2.26 6.64 -2.39 -0.02 2.24 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.41 9.23 7.53 -92.71 -0.70 8.54 16 40 H 0.16 3.15 7.96 -2.91 -0.02 3.13 16 41 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -67.98 375.41 1.77 -66.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.34 Total: 15.45 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.81 Total: 5.88 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.08 Total: -114.96 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.07 Total: -20.53 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.26 Total: 2.06 kcal Total: -67.98 1.77 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707452300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds